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CSPI03G44240 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAGGAGTAGCCCATCTATCTTATATGGAGTATGAGTCTCCTTGGTTTTTCCAATATGGAAATCTCAACTTCTCCAATATGTCCCCCTCAAGATGGTGCTTCTTTGGTTCACCTATCTTGAACCAAATACCCGTTTGGGTTTACTGGACTCTGATATCATGTTAAATTTGATAGTATAGGGTTCCATCTCAAAACCAATTGGCAATGAGAGGAGTAGCCCATCTATCTTATATGGAGTATGAGTCTCCTTGGTTTTTCCAATGTGGGACTCCCAACTTCTCCAATACTAATACTAAACTTACCTTCCCCTCATAAGTTTAAACTTTTCGGTCGATTGGTGATTTAACCATGGTTAAATCTCTCATTTTGCCCATTAGTCTTAAGTAGACTTTTACCATTTAGGCGACGTTTGGTCCGCAAGTTTGGAATCTTAAGCCTAAGAATGTTAAGTCGGGGGATAAGGCTGAGAGGTTTAGGTAGTCTGGGAATGTGAAAGATTTTATCTCATTAGGCCCGTGAAAGATTTCCATTCGGCAGGAGCACTAGAGGAATGTCATTGTTCAATAAGTTTATTGATTCAGTTTCTCTCATGGAAATTTGATAGACCCCCTATCATACACCAATATAATAGGAGAGGGAAAAAGAATTGACACCTGCGAATGAGGGAGAGGGTGTATGTGAGAGTAAAGTAGTTAGAAAGTATTAATAGTGGAAAGGAGAGGGCGGGAAAGTCAGTTAAGCTTTTGGTTAGAGAAGAGTTTCTGTTCTACCTTGAGAGATTGGTTAGCAGAAGGGAGTTCATACATCTTTGAGATCTGATTAGAGATTGTAACCTAGATTCACCATTGCATCTAGTACTTACTATTCAATATAGTTTCTGGTTTCCATCAAAATTCCATCTTAAAATGGTAGGTTCACTTGGTCTAGAGATGGTAATTCTCCTTCCAGATCATTATTAGACAGATTCTTCATAAATCAGGTGTGGGATGTTTGTTTTGAAAATTCTTGGGTTTCACAAAAAGCACGTATCTTCTCATATCACTTTCCTTTAATCTTGGGGGCTGGTGCTTTTCTTTGGGGTCCCTCTCCTTTTTGGTTTTGTAACAACTGGTTGCTGTCCAGTGATTGTAATCAGACTATTGCTGAAACAGTGAGCAATTCAAACTTCCATGGATGGGCCGGTTTCATTCTTCATGAGCAGTCGAGATCAGTTAAATTGGCAGTAAAAGCTTGGAATATTGCAGCGCAAAGCCAAGGTAAAAGAAAGAGAGAAATCCTTGCTGTCAGAATTAGAAAAATACGATTATGTGGCTGAGTTGATTGGGTTAAATGAAGAAGAGTTGGATTCTAGAGCAGCTTTGCAAGCGGAATTACTTAGCTTTTACCAAAATGAAGAGCGTAATTATATTCAGAAGAGTAAACTCAATTGGCTGTCTTTGGGTGATGAGAATACAGATTTCTTCCACCGTTTTCTAAATGCAAAAGAAAGAAGGAACCTCATAACTGAATTAAAAGATGATAATGGGGTCGTCTCGACTTCATTCCACGACATTGAAAGGCTTGTGCTAGAATTTTTTGAGACACTTTATACAAGAATTCCGGGGGACAGATTCACCCCTATTAATAGCAATTGGTCTTGTGTTTCCTCAATTCAGAATGAGGCTCTCGTTAACCAGTTTTCAGTGGAGGAGATCTTTAAAGCCTTAAAGGCACTTGGCAGCAATAAAGCTCCGGGCCTGGATGGATTCACAGCGGAGTTCCTAATCACCCACTGA ATGAGAGGAGTAGCCCATCTATCTTATATGGAGTATGAGTCTCCTTGGTTTTTCCAATATGGAAATCTCAACTTCTCCAATATGTCCCCCTCAAGATGGTGCTTCTTTGGTTCACCTATCTTGAACCAAATACCCGTTTGGGCGACGTTTGGTCCGCAAGTTTGGAATCTTAAGCCTAAGAATGTTAAGTCGGGGGATAAGGCTGAGAGGTTTAGGTTCACTTGGTCTAGAGATGGTAATTCTCCTTCCAGATCATTATTAGACAGATTCTTCATAAATCAGGTGTGGGATGTTTGTTTTGAAAATTCTTGGGTTTCACAAAAAGCACGTATCTTCTCATATCACTTTCCTTTAATCTTGGGGGCTGGTGCTTTTCTTTGGGGTCCCTCTCCTTTTTGGTTTTGTAACAACTGGTTGCTGTCCAGTGATTGTAATCAGACTATTGCTGAAACAGTGAGCAATTCAAACTTCCATGGATGGGCCGGTTTCATTCTTCATGAGCAGTCGAGATCAGTTAAATTGGCAGTAAAAGCTTGGAATATTGCAGCGCAAAGCCAAGAATTAGAAAAATACGATTATGTGGCTGAGTTGATTGGGTTAAATGAAGAAGAGTTGGATTCTAGAGCAGCTTTGCAAGCGGAATTACTTAGCTTTTACCAAAATGAAGAGCGTAATTATATTCAGAAGAGTAAACTCAATTGGCTGTCTTTGGGTGATGAGAATACAGATTTCTTCCACCGTTTTCTAAATGCAAAAGAAAGAAGGAACCTCATAACTGAATTAAAAGATGATAATGGGGTCGTCTCGACTTCATTCCACGACATTGAAAGGCTTGTGCTAGAATTTTTTGAGACACTTTATACAAGAATTCCGGGGGACAGATTCACCCCTATTAATAGCAATTGGTCTTGTGTTTCCTCAATTCAGAATGAGGCTCTCGTTAACCAGTTTTCAGTGGAGGAGATCTTTAAAGCCTTAAAGGCACTTGGCAGCAATAAAGCTCCGGGCCTGGATGGATTCACAGCGGAGTTCCTAATCACCCACTGA ATGAGAGGAGTAGCCCATCTATCTTATATGGAGTATGAGTCTCCTTGGTTTTTCCAATATGGAAATCTCAACTTCTCCAATATGTCCCCCTCAAGATGGTGCTTCTTTGGTTCACCTATCTTGAACCAAATACCCGTTTGGGCGACGTTTGGTCCGCAAGTTTGGAATCTTAAGCCTAAGAATGTTAAGTCGGGGGATAAGGCTGAGAGGTTTAGGTTCACTTGGTCTAGAGATGGTAATTCTCCTTCCAGATCATTATTAGACAGATTCTTCATAAATCAGGTGTGGGATGTTTGTTTTGAAAATTCTTGGGTTTCACAAAAAGCACGTATCTTCTCATATCACTTTCCTTTAATCTTGGGGGCTGGTGCTTTTCTTTGGGGTCCCTCTCCTTTTTGGTTTTGTAACAACTGGTTGCTGTCCAGTGATTGTAATCAGACTATTGCTGAAACAGTGAGCAATTCAAACTTCCATGGATGGGCCGGTTTCATTCTTCATGAGCAGTCGAGATCAGTTAAATTGGCAGTAAAAGCTTGGAATATTGCAGCGCAAAGCCAAGAATTAGAAAAATACGATTATGTGGCTGAGTTGATTGGGTTAAATGAAGAAGAGTTGGATTCTAGAGCAGCTTTGCAAGCGGAATTACTTAGCTTTTACCAAAATGAAGAGCGTAATTATATTCAGAAGAGTAAACTCAATTGGCTGTCTTTGGGTGATGAGAATACAGATTTCTTCCACCGTTTTCTAAATGCAAAAGAAAGAAGGAACCTCATAACTGAATTAAAAGATGATAATGGGGTCGTCTCGACTTCATTCCACGACATTGAAAGGCTTGTGCTAGAATTTTTTGAGACACTTTATACAAGAATTCCGGGGGACAGATTCACCCCTATTAATAGCAATTGGTCTTGTGTTTCCTCAATTCAGAATGAGGCTCTCGTTAACCAGTTTTCAGTGGAGGAGATCTTTAAAGCCTTAAAGGCACTTGGCAGCAATAAAGCTCCGGGCCTGGATGGATTCACAGCGGAGTTCCTAATCACCCACTGA MRGVAHLSYMEYESPWFFQYGNLNFSNMSPSRWCFFGSPILNQIPVWATFGPQVWNLKPKNVKSGDKAERFRFTWSRDGNSPSRSLLDRFFINQVWDVCFENSWVSQKARIFSYHFPLILGAGAFLWGPSPFWFCNNWLLSSDCNQTIAETVSNSNFHGWAGFILHEQSRSVKLAVKAWNIAAQSQELEKYDYVAELIGLNEEELDSRAALQAELLSFYQNEERNYIQKSKLNWLSLGDENTDFFHRFLNAKERRNLITELKDDNGVVSTSFHDIERLVLEFFETLYTRIPGDRFTPINSNWSCVSSIQNEALVNQFSVEEIFKALKALGSNKAPGLDGFTAEFLITH* Homology
BLAST of CSPI03G44240 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 4.5e-08 Identity = 77/300 (25.67%), Postives = 126/300 (42.00%), Query Frame = 0
BLAST of CSPI03G44240 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 8.7e-04 Identity = 42/173 (24.28%), Postives = 76/173 (43.93%), Query Frame = 0
BLAST of CSPI03G44240 vs. ExPASy TrEMBL
Match: A0A5D3BXH7 (Exodeoxyribonuclease-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00160 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 3.4e-43 Identity = 112/277 (40.43%), Postives = 137/277 (49.46%), Query Frame = 0
BLAST of CSPI03G44240 vs. ExPASy TrEMBL
Match: A0A438DFY9 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_615 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 9.0e-36 Identity = 90/279 (32.26%), Postives = 139/279 (49.82%), Query Frame = 0
BLAST of CSPI03G44240 vs. ExPASy TrEMBL
Match: A0A438JA13 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_396 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 9.0e-36 Identity = 90/279 (32.26%), Postives = 139/279 (49.82%), Query Frame = 0
BLAST of CSPI03G44240 vs. ExPASy TrEMBL
Match: A0A438FW30 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_762 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 1.5e-35 Identity = 89/279 (31.90%), Postives = 139/279 (49.82%), Query Frame = 0
BLAST of CSPI03G44240 vs. ExPASy TrEMBL
Match: A0A5A7UNL3 (GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001920 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.0e-35 Identity = 99/254 (38.98%), Postives = 134/254 (52.76%), Query Frame = 0
BLAST of CSPI03G44240 vs. NCBI nr
Match: XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]) HSP 1 Score: 251.5 bits (641), Expect = 1.0e-62 Identity = 130/265 (49.06%), Postives = 173/265 (65.28%), Query Frame = 0
BLAST of CSPI03G44240 vs. NCBI nr
Match: XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]) HSP 1 Score: 251.5 bits (641), Expect = 1.0e-62 Identity = 130/265 (49.06%), Postives = 173/265 (65.28%), Query Frame = 0
BLAST of CSPI03G44240 vs. NCBI nr
Match: XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]) HSP 1 Score: 251.5 bits (641), Expect = 1.0e-62 Identity = 130/265 (49.06%), Postives = 173/265 (65.28%), Query Frame = 0
BLAST of CSPI03G44240 vs. NCBI nr
Match: TYK03825.1 (exodeoxyribonuclease-like [Cucumis melo var. makuwa]) HSP 1 Score: 185.7 bits (470), Expect = 7.0e-43 Identity = 112/277 (40.43%), Postives = 137/277 (49.46%), Query Frame = 0
BLAST of CSPI03G44240 vs. NCBI nr
Match: XP_038904301.1 (uncharacterized protein LOC120090656 [Benincasa hispida]) HSP 1 Score: 181.0 bits (458), Expect = 1.7e-41 Identity = 95/237 (40.08%), Postives = 141/237 (59.49%), Query Frame = 0
BLAST of CSPI03G44240 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein ) HSP 1 Score: 67.8 bits (164), Expect = 2.0e-11 Identity = 54/173 (31.21%), Postives = 84/173 (48.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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