CSPI03G43740 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G43740
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Beta-1,3-N-Acetylglucosaminyltransferase family protein
Location	Chr3: 37556995 .. 37557285 (-)
RNA-Seq Expression	CSPI03G43740
Synteny	CSPI03G43740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGACATAGAAATAAGTCAAAGTACAACTGGAAGAGAAGTGAATGGGAAGCAAGAATGGAGAGCAACAATCAGAAACAAATGTGTTTGTTCTCAATACAGTGTGAAATTTGATTGCAATGGGTTTAACACAGTTGAAAAGGTTGATGAATCCATACTAATGGTTGCTGGGTCAGTGTGTTTGGTTAACAATGGTCAACCAATCTTCAACTCATCACCAATCTCCTTCACTTATGCTTGGGATAATGCCTTCCCTTTCAGCCCTCTCTTCTCTCAAGTTGCCTGTTCT

mRNA sequence

ATGAATGACATAGAAATAAGTCAAAGTACAACTGGAAGAGAAGTGAATGGGAAGCAAGAATGGAGAGCAACAATCAGAAACAAATGTGTTTGTTCTCAATACAGTGTGAAATTTGATTGCAATGGGTTTAACACAGTTGAAAAGGTTGATGAATCCATACTAATGGTTGCTGGGTCAGTGTGTTTGGTTAACAATGGTCAACCAATCTTCAACTCATCACCAATCTCCTTCACTTATGCTTGGGATAATGCCTTCCCTTTCAGCCCTCTCTTCTCTCAAGTTGCCTGTTCT

Coding sequence (CDS)

ATGAATGACATAGAAATAAGTCAAAGTACAACTGGAAGAGAAGTGAATGGGAAGCAAGAATGGAGAGCAACAATCAGAAACAAATGTGTTTGTTCTCAATACAGTGTGAAATTTGATTGCAATGGGTTTAACACAGTTGAAAAGGTTGATGAATCCATACTAATGGTTGCTGGGTCAGTGTGTTTGGTTAACAATGGTCAACCAATCTTCAACTCATCACCAATCTCCTTCACTTATGCTTGGGATAATGCCTTCCCTTTCAGCCCTCTCTTCTCTCAAGTTGCCTGTTCT

Protein sequence

MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS

Homology

[Close]

BLAST of CSPI03G43740 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 3   DIEISQSTTGREVNGKQEWRATIRNKCV--CSQYSVKFDCNGFNTVEKVDESIL-MVAGS 62
           DI ++Q+ T    NG   +   I N+C+  C    +  +C  F++ + ++  +   +   
Sbjct: 81  DIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYD 140

Query: 63  VCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
            CLVNNG+P+   S +SF YA  N FP+    + V C+
Sbjct: 141 DCLVNNGKPLPFGSTLSFHYA--NTFPYHLSVAFVTCA 176

[Close]

BLAST of CSPI03G43740 vs. ExPASy TrEMBL
Match: A0A0A0LDN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 60
           MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV
Sbjct: 26  MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 85

Query: 61  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS
Sbjct: 86  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 122

[Close]

BLAST of CSPI03G43740 vs. ExPASy TrEMBL
Match: A0A0A0LEA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 60
           +NDI ISQ+TTG  V GKQ W+ATI N C+C Q S+K DCNGFNTV+ VD SIL V+GSV
Sbjct: 26  LNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDCNGFNTVQAVDPSILAVSGSV 85

Query: 61  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           CLVN GQPIF S+PISFTYA DNAFPF PL SQ++CS
Sbjct: 86  CLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 122

[Close]

BLAST of CSPI03G43740 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 60
           + DI I Q  T + V G+QEW  T+ N CVCSQY+VK DC GF++ E VD S L   G+ 
Sbjct: 26  LGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNE 85

Query: 61  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           CL+N G+PIF S PISFTYAWD  FPF PL SQVACS
Sbjct: 86  CLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVACS 122

[Close]

BLAST of CSPI03G43740 vs. ExPASy TrEMBL
Match: A0A7J8YGW1 (Sema domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_000506 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 3   DIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCL 62
           +I ISQS TG+ V  K EW+AT++N C+C+Q  +K +CNGF TVE V+ S++  +G  CL
Sbjct: 10  NITISQSQTGKTVENKPEWKATVKNDCICTQSDLKLNCNGFQTVEDVESSVMSKSGGECL 69

Query: 63  VNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           +NNG P+  SS +SF YAWD +FPF P+ SQV CS
Sbjct: 70  INNGGPVIYSSNLSFIYAWDTSFPFKPISSQVICS 104

[Close]

BLAST of CSPI03G43740 vs. ExPASy TrEMBL
Match: A0A0B0NVJ4 (uncharacterized protein At1g05835-like OS=Gossypium arboreum OX=29729 GN=LOC108462001 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.9e-24
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 3   DIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCL 62
           D++I Q+ TG+ V  K EW+AT++N C+C+Q  +K  C+GF TVE VD S++   G+ CL
Sbjct: 28  DVKIIQTQTGKTVENKPEWKATVKNDCICTQSDLKLSCDGFQTVEAVDSSLMAKTGAECL 87

Query: 63  VNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           +N GQP+ +SS +SF YAWD +FPF PL SQ+ CS
Sbjct: 88  INGGQPVASSSNLSFNYAWDTSFPFKPLSSQINCS 122

[Close]

BLAST of CSPI03G43740 vs. NCBI nr
Match: KGN60075.1 (hypothetical protein Csa_001952 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.1e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 60
           MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV
Sbjct: 26  MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 85

Query: 61  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS
Sbjct: 86  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 122

[Close]

BLAST of CSPI03G43740 vs. NCBI nr
Match: XP_038896903.1 (TPD1 protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 7.4e-43
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 60
           MNDI ISQSTTG+EVNGKQEWRATI N CVCSQYSVKFDCNGFN+VEKVDESILMVAGS 
Sbjct: 26  MNDITISQSTTGKEVNGKQEWRATITNNCVCSQYSVKFDCNGFNSVEKVDESILMVAGSE 85

Query: 61  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           CLVNNGQP+F S+PISFTYAWDNAF F PLFSQVACS
Sbjct: 86  CLVNNGQPMFKSNPISFTYAWDNAFSFKPLFSQVACS 122

[Close]

BLAST of CSPI03G43740 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 4.8e-26
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSV 60
           + DI I Q  T + V G+QEW  T+ N CVCSQY+VK DC GF++ E VD S L   G+ 
Sbjct: 26  LGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNE 85

Query: 61  CLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           CL+N G+PIF S PISFTYAWD  FPF PL SQVACS
Sbjct: 86  CLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVACS 122

[Close]

BLAST of CSPI03G43740 vs. NCBI nr
Match: MBA0698818.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 3   DIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCL 62
           +I ISQS TG+ V  K EW+AT++N C+C+Q  +K +CNGF TVE V+ S++  +G  CL
Sbjct: 10  NITISQSQTGKTVENKPEWKATVKNDCICTQSDLKLNCNGFQTVEDVESSVMSKSGGECL 69

Query: 63  VNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           +NNG P+  SS +SF YAWD +FPF P+ SQV CS
Sbjct: 70  INNGGPVIYSSNLSFIYAWDTSFPFKPISSQVICS 104

[Close]

BLAST of CSPI03G43740 vs. NCBI nr
Match: XP_017617499.1 (PREDICTED: uncharacterized protein At1g05835-like [Gossypium arboreum] >KHG09846.1 hypothetical protein F383_05114 [Gossypium arboreum] >KHG15126.1 hypothetical protein F383_19054 [Gossypium arboreum] >KHG19660.1 hypothetical protein F383_24223 [Gossypium arboreum])

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 3   DIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCL 62
           D++I Q+ TG+ V  K EW+AT++N C+C+Q  +K  C+GF TVE VD S++   G+ CL
Sbjct: 28  DVKIIQTQTGKTVENKPEWKATVKNDCICTQSDLKLSCDGFQTVEAVDSSLMAKTGAECL 87

Query: 63  VNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
           +N GQP+ +SS +SF YAWD +FPF PL SQ+ CS
Sbjct: 88  INGGQPVASSSNLSFNYAWDTSFPFKPLSSQINCS 122

[Close]

BLAST of CSPI03G43740 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-13
Identity = 34/97 (35.05%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKC-VCSQYSVKFDCNGFNTVEKVDESILMVAGS 60
           +N + + QS TG+ V  K EW   + N C  C   + +  C GFN+V  +D S+L+ +G 
Sbjct: 27  LNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQNTELLCVGFNSVTPIDTSLLLKSGD 86

Query: 61  VCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVAC 97
            CLVN G+ I     I F Y WD +F    +   + C
Sbjct: 87  ACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123

[Close]

BLAST of CSPI03G43740 vs. TAIR 10
Match: AT4G32105.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-12
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 0


Query: 1   MNDIEISQSTTGREVNGKQEWRATIRNKC-VCSQYSVKFDCNGFNTVEKVDESILMVAGS 60
           +N + + QS TG+ V  K EW   + N C  C     K  C GF +V  V  S+L  +G 
Sbjct: 27  LNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQYTKLSCVGFQSVTPVATSLLSKSGD 86

Query: 61  VCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVAC 97
           +CL+N G  IF      F Y WD +F    +   + C
Sbjct: 87  ICLLNAGNFIFPHVDFVFNYVWDTSFDLKVIDGVIVC 123

[Close]

BLAST of CSPI03G43740 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 32/91 (35.16%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 4   IEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCLV 63
           I+I    TGRE+ G+ EW+ T+ N C C Q  V   C GF   + V   +L   G+ CL+
Sbjct: 29  IQIGAVRTGREIGGQPEWKVTVINTCNCFQKHVTLSCGGFAPAKPVKPLLLQPQGNTCLM 88

Query: 64  NNGQPIFNSSPISFTYAWDNAFPFSPLFSQV 95
             G  +   +   FTYA    + F P+ S+V
Sbjct: 89  IKGAALPAGATAQFTYA-GQPYIFRPVGSKV 118

[Close]

BLAST of CSPI03G43740 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 3   DIEISQSTTGREVNGKQEWRATIRNKCV--CSQYSVKFDCNGFNTVEKVDESIL-MVAGS 62
           DI ++Q+ T    NG   +   I N+C+  C    +  +C  F++ + ++  +   +   
Sbjct: 81  DIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYD 140

Query: 63  VCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 98
            CLVNNG+P+   S +SF YA  N FP+    + V C+
Sbjct: 141 DCLVNNGKPLPFGSTLSFHYA--NTFPYHLSVAFVTCA 176

The following BLAST results are available for this feature:

BLAST of CSPI03G43740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6TLJ2	1.9e-04	29.59	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]

BLAST of CSPI03G43740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDN0	2.0e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
A0A0A0LEA1	1.3e-32	71.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1	[more]
A0A6J1CKK7	2.3e-26	59.79	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A7J8YGW1	2.2e-24	53.68	Sema domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_000506 PE=4...	[more]
A0A0B0NVJ4	4.9e-24	51.58	uncharacterized protein At1g05835-like OS=Gossypium arboreum OX=29729 GN=LOC1084...	[more]

BLAST of CSPI03G43740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60075.1	4.1e-49	100.00	hypothetical protein Csa_001952 [Cucumis sativus]	[more]
XP_038896903.1	7.4e-43	88.66	TPD1 protein homolog 1-like [Benincasa hispida]	[more]
XP_022141896.1	4.8e-26	59.79	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
MBA0698818.1	4.5e-24	53.68	hypothetical protein [Gossypium aridum]	[more]
XP_017617499.1	1.0e-23	51.58	PREDICTED: uncharacterized protein At1g05835-like [Gossypium arboreum] >KHG09846...	[more]

BLAST of CSPI03G43740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32110.1	5.0e-13	35.05	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32105.1	5.5e-12	34.02	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32090.1	4.0e-10	35.16	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G24972.1	1.3e-05	29.59	tapetum determinant 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 2..97
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 2..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G43740.1	CSPI03G43740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds