CSPI03G42690 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G42690
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	TRASH domain-containing protein
Location	Chr3: 36665101 .. 36666905 (+)
RNA-Seq Expression	CSPI03G42690
Synteny	CSPI03G42690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATATTATTAATATACCTTTTGTTTTGTAAACCCTATTTTGCATAAGCTTACCCCTTCCCCTGTTTCCCCCCACTCCATCCCGCCACCGGCATTCCAGGTTCCTTTAGCGGCTCCGATTCACGGTGAACCCTCAGCTGCCACCGTCTCTTCATTCCGACGAAATCACCGCCATTCTCTTCTTCTTTCACTCTCTCGCCTCTCTGATTGTTTAACTCAGTGGTTCAGCCCTTAGCGCCGTCGGTGAGATCGCACCCAACGTTTTATTTTTTTGTTTGTTAGGTTATTGTTGATTTGTTCTCTGCACCCACGGAGAAGAAAATGAAGAACTGTTTGTTCTCTTCATTGGATTTCTTCTTCAAATTAGTGTTAATGAAAATATAAAAACAATGTATACCTCACAAATTTGTAACATAAATAGATTGAAATTATGAATAGAAAGTAGCAAAATACATATTAGTAGAGATTTTTCTCTGCTCCAGTCGATCTTCTGAATGTATGAGTTGCAGTTCATTTGATTATCTCATTTGTGCCTTTTGTTGCAGGAAATTTAGGGTTTGTTATTTGCTGAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGACGGTAAGGACGTAGGTTGCGAACTTCCACGATTTGTATGCTTTGTTCTGCACATTGCTTGTATGTTCTTACTTGCTAGTGCTTACGGATTGATGAGACTACATCGTTCTGTTCTATCTTTGCTTGTTTGTGATGCATATTTTAGGGTATAGAAATAGATAGTTGTTCTTGTCTTGCTGTGATTTTAAATTAGTTATGGTGGGTGGGAGCCCCATGTTCCTATTTCCTTATGTGATTTGTTCTGCAGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGTAAACTTTCTTCATTTATTTGTGGAGCAAATTGAATTTTGTAAGTACAAACTTCTTATTGTCTCCGTCTTTTTAATTGTTGTTTCATTTGTATTATCCAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAGATCAGAATGGATAGGGAGTCGAGACATATTGCACGCAGGTTGAAAATTCCTTCCATTCCCATTTGTTATATGCCTATATTTTTTGCAAATGCTATTTCAGTTGTAACTCAGGATCGTTCACATTTGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAACTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGAGTTCGTTTATCTAATATCTCACTATATCAAATATTTATGTAGTAGTTCCGTTTTCACATATCTAGAACTGTCACAGTTCTTGTACAGTGGTAGATTATCTTTGTTCGCCTTTACGCAAGCATGGTTGTCATGTACAATTTCATTTTGAGAATGTGTTTTTTTTCCTTTAATATACAGACTTCTAAAAATATTTATTGAACCATTTCCAATTGGTTTTTGCGGTTTTGTTTGAGTCTATGTAGTGGTTTAAGGCAATACCCAAGTTTTTGTTATTCATGGTTTCTT

mRNA sequence

AATAATATTATTAATATACCTTTTGTTTTGTAAACCCTATTTTGCATAAGCTTACCCCTTCCCCTGTTTCCCCCCACTCCATCCCGCCACCGGCATTCCAGGTTCCTTTAGCGGCTCCGATTCACGGTGAACCCTCAGCTGCCACCGTCTCTTCATTCCGACGAAATCACCGCCATTCTCTTCTTCTTTCACTCTCTCGCCTCTCTGATTGTTTAACTCAGTGGTTCAGCCCTTAGCGCCGTCGGAAATTTAGGGTTTGTTATTTGCTGAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAGATCAGAATGGATAGGGAGTCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAACTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGAGTTCGTTTATCTAATATCTCACTATATCAAATATTTATGTAGTAGTTCCGTTTTCACATATCTAGAACTGTCACAGTTCTTGTACAGTGGTAGATTATCTTTGTTCGCCTTTACGCAAGCATGGTTGTCATGTACAATTTCATTTTGAGAATGTGTTTTTTTTCCTTTAATATACAGACTTCTAAAAATATTTATTGAACCATTTCCAATTGGTTTTTGCGGTTTTGTTTGAGTCTATGTAGTGGTTTAAGGCAATACCCAAGTTTTTGTTATTCATGGTTTCTT

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAGGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAGATCAGAATGGATAGGGAGTCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAGGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAACTCAAAGTCAAAGTGGTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE*

Homology

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BLAST of CSPI03G42690 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.8e-54
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

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BLAST of CSPI03G42690 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 77/142 (54.23%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS P+YPGHG+ FVRND   FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K+MT D T EFE+ R+RP KYDR +  +T+ A+ ++ KI+  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAKKELDQSISLVKAPSVLKE 143
           ++  KE++Q++SL++ PS L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]

BLAST of CSPI03G42690 vs. ExPASy Swiss-Prot
Match: Q99L28 (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.5e-38
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   MEE
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMEE 161

[Close]

BLAST of CSPI03G42690 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.9e-38
Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           ++ +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGKG------KQLEEKMVQQLQEDVDMED 161

[Close]

BLAST of CSPI03G42690 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 79/167 (47.31%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R +  K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
            +  KE+ Q+I L++AP   K        +L+ K+V    E   ME+
Sbjct: 121 VQDVKEVKQNIHLIRAPLAGKG------KQLEDKMVQKLQEDVDMED 161

[Close]

BLAST of CSPI03G42690 vs. ExPASy TrEMBL
Match: A0A0A0LQI2 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]

BLAST of CSPI03G42690 vs. ExPASy TrEMBL
Match: A0A0A0LIW9 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. ExPASy TrEMBL
Match: A0A5A7TFB9 (Putative ribosome biogenesis protein RLP24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00400 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.6e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. ExPASy TrEMBL
Match: A0A1S3C349 (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103496478 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.6e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. ExPASy TrEMBL
Match: A0A1S3CRL0 (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103503948 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.6e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. NCBI nr
Match: XP_011649861.1 (probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_011652414.1 probable ribosome biogenesis protein RLP24 [Cucumis sativus] >KAE8652222.1 hypothetical protein Csa_021953 [Cucumis sativus] >KGN59956.1 hypothetical protein Csa_001526 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. NCBI nr
Match: XP_008456562.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 5.3e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. NCBI nr
Match: XP_008466567.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo] >KAA0041608.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYK19649.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 5.3e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]

BLAST of CSPI03G42690 vs. NCBI nr
Match: KAA0057127.1 (putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYJ97108.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-85
Identity = 166/186 (89.25%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDAT-------------------IFRFCRSKCHKNFK 60
           MRLEKCWFCSSPIYPGHGIQFVRNDAT                   IFRFCRSKCHKNFK
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATVRTQVANFHDLYALFCTLLIFRFCRSKCHKNFK 60

Query: 61  MKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRM 120
           MKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRM
Sbjct: 61  MKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRM 120

Query: 121 DRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSE 168
           DRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVP+QSE
Sbjct: 121 DRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSE 180

[Close]

BLAST of CSPI03G42690 vs. NCBI nr
Match: XP_038903115.1 (probable ribosome biogenesis protein RLP24 [Benincasa hispida])

HSP 1 Score: 298.5 bits (763), Expect = 3.6e-77
Identity = 148/168 (88.10%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRN+TE+TLKAI+KIDK+R DRESRHIARRHQGKKAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIRKIDKVRADRESRHIARRHQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            EA+KELDQSISLVKAPS LKEDPSLTLPK+K+KVVPSQ+EQ  RMEE
Sbjct: 121 SEAQKELDQSISLVKAPSALKEDPSLTLPKIKIKVVPSQAEQTQRMEE 168

[Close]

BLAST of CSPI03G42690 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-55
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CSPI03G42690 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-55
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CSPI03G42690 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-14
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

[Close]

BLAST of CSPI03G42690 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

The following BLAST results are available for this feature:

BLAST of CSPI03G42690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22165	5.8e-54	66.07	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q86B05	1.1e-41	54.23	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q99L28	4.5e-38	49.11	Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P...	[more]
Q9UHA3	9.9e-38	48.52	Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE...	[more]
Q3SZ12	1.3e-37	47.31	Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2...	[more]

BLAST of CSPI03G42690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI2	1.2e-89	100.00	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=3 ...	[more]
A0A0A0LIW9	1.2e-89	100.00	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=3 ...	[more]
A0A5A7TFB9	2.6e-89	99.40	Putative ribosome biogenesis protein RLP24 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3C349	2.6e-89	99.40	probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1034964...	[more]
A0A1S3CRL0	2.6e-89	99.40	probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1035039...	[more]

BLAST of CSPI03G42690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649861.1	2.4e-89	100.00	probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_011652414.1 pro...	[more]
XP_008456562.1	5.3e-89	99.40	PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo]	[more]
XP_008466567.1	5.3e-89	99.40	PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo] >KAA0041608...	[more]
KAA0057127.1	1.6e-85	89.25	putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYJ97108....	[more]
XP_038903115.1	3.6e-77	88.10	probable ribosome biogenesis protein RLP24 [Benincasa hispida]	[more]

BLAST of CSPI03G42690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44860.1	4.1e-55	66.07	Ribosomal protein L24e family protein	[more]
AT2G44860.2	4.1e-55	66.07	Ribosomal protein L24e family protein	[more]
AT3G53020.1	7.8e-14	33.86	Ribosomal protein L24e family protein	[more]
AT2G36620.1	1.3e-13	33.86	ribosomal protein L24	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 6..44 e-value: 5.7E-12 score: 55.8
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 1..68 e-value: 1.6E-35 score: 122.9
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 1..65 e-value: 1.2E-34 score: 118.4
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..163
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 1..54 e-value: 2.11133E-30 score: 103.036
None	No IPR available	PANTHER	PTHR10792:SF36	BNAA04G10330D PROTEIN	coord: 1..163
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..56
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 8..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G42690.1	CSPI03G42690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus