CSPI03G42420 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G42420
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description30S ribosomal protein S9
LocationChr3: 36459358 .. 36461878 (-)
RNA-Seq ExpressionCSPI03G42420
SyntenyCSPI03G42420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAATTGAGAGGAGGATATAGTAAATTCACACACATTATCCCCTTCGAGCTTCATCATCTCACCCGTTCTTGCATACACTGCAGTTTCAATACCTTCATTCTGGATAGACAATGGCTACTTCTATATCCTCTCTTGCATTTTCTCTATCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTCTCCTTTCCCCGTTCAAAATCTCTTCTGATTTCCCCTTCCTCCTCTACTTCCTCACTTGTCGTATCTGCCTCCGCCGCTGCCGTTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTTGCTGCTCAGACGCTTTTTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGTGAAGGCACTGGCAAAGTTATTATCAATTACCGCGAAGCTAAGGTTCTCTATCTTTTCCTTTCTTCGCCTACTTTCCTTTAATTTAATCCGTTTTCTCTTTCTAATTTTTGGTGCTGGCTGTTCTTTGGACGATCTAGGGATTTTGTTTCTTTTGCTGAATTCGACTAGGTTCGTTTGATGGCAATGCAAATGTTTTCTTTCCTTTTTTTTATTAAACCAACAATTGTTGTTATATGTTCCTGATTAGCCTCTTCTATATGCGATGGAACTGATACTTTTCTTTAAGCTTTCCCCCACCGACTCTGTTATCGATATGCGACGTTTATTATGTTGAAGTGGAAATGAACTTGAGAATAACAATTTTTACATTCTAGAATTAAATTCTAAGGCTATTGTTTCTTCGTCTAGTGCGGTGAATTTATATTAGAAGATTCCATCGCTTGGTGCTAAATTCGGAAGGACTGATGCGCATATCTAGTGTTTCTTGTAAGTTTGAGTTTGAGCTTCCAGTGAAATGGCTCATAATGCCAAAACACATATCTATTTCGGGGATTGAGTAGTTCCCTTTTCTTTCTAAGTTGGTGTGGGAGGGAAAATGTGCCATCGTTCTTCCACTTACATCACATATGGAAATCCTTAGATCAATTAGATCAATTGCAAATCCTTCGTTTGCCATTTTCCAGTGTTCATTTGTCATAGTGTTTCTGGAGATAGCAACTATAATCTTAGGACCTTACTTAAACAGGATCTGTTTTATTGGTTGTACAACTCTCTCCTTTAGGTTCTAAAGAGATGGAAATCATAGTATCAAGTCCTGTACGGGTGTAACTAATACCTACATTTGTTCCTTAATATGTTAAGATGTTTGTTTCACCTATAAATAAGTGAATTTAGTACAATTTTGCTTTCTTTCTTCCATTGAGAGGGAGTGGCGGGATTTGAACCTCAAGGCTTTTGTTCGAATGTATACGTCTTTCAAGCTTTGCTCATAGTGAAGAAACGTGTTCCGTTTCTTGTTAGGATGCCGCTTTCCCTTACATGTCTATAAGGTTTTTCTTTCGTTGTGTACAATAAGTGGGATTGTGAAGATTTATTACTGCTGAGATCAGGTTTTTCTAGCATTGATTCTTGAATTATCTCGTCTATACCCTTTCTGGAGTAAGTAGACGATTCACCCAAATATTCACTGAGGCTCTAGCTCTTTTATTTATTTAAGACAACTTGTTATAACAACAACCAATTGGTTTTGTATGAAGTTTTTAAGCTGTAACTCACCTCTACATTGGAATACACTATTTGTTGCAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATATGAAAGTAGCTACGATGTATTCGTGAAGGCTGAAGGAGGCGGGCTATCTGGCCAGGCACAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACGCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGAGGTTCATTTTTCCTCTTCAATTGTTTTACGTTCCCTCGTTTCCTACTTTATTTGTACAACCCAGATGTTTTCTTCTACTTTTCTTTTACTCCCTGATGTAGTGTTATTCCAACATTTCTCCATATGGGGGGGAAGAAAGAAGTCAACCCAAAATTGATCATTCTAATTCTTTTAAAACAAACTTCTCCCCGTTCGAAAAGCCCTCCTGAACAAGCAGAAAAGTAATAGAGAAATTGGGAATAATCATCAAAGGAAAAGAAATCCACAACTTGAAAATTTCATTATGTGAAAAATTATTACTTTTTATATTGTAGTTATCTATTGTATAAGAGTATTATACTGTTCACACTGTTAAGTAAGTATACCAAACTTTATATTTTAAATTAGGAAGATTAGAAACCAAAATCATGTCCTTTGTAGCCTATCAATTCTATGAACTTTTTCAATGTGGCATACCTTTCATATTTTGCTAAGACTCGATATTTCATACATTTTCTTTTAACAATGCACCTCCAATATTTGATAGTTTGG

mRNA sequence

GTAAATTGAGAGGAGGATATAGTAAATTCACACACATTATCCCCTTCGAGCTTCATCATCTCACCCGTTCTTGCATACACTGCAGTTTCAATACCTTCATTCTGGATAGACAATGGCTACTTCTATATCCTCTCTTGCATTTTCTCTATCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTCTCCTTTCCCCGTTCAAAATCTCTTCTGATTTCCCCTTCCTCCTCTACTTCCTCACTTGTCGTATCTGCCTCCGCCGCTGCCGTTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTTGCTGCTCAGACGCTTTTTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGTGAAGGCACTGGCAAAGTTATTATCAATTACCGCGAAGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATATGAAAGTAGCTACGATGTATTCGTGAAGGCTGAAGGAGGCGGGCTATCTGGCCAGGCACAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACGCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGAGGTTCATTTTTCCTCTTCAATTGTTTTACGTTCCCTCGTTTCCTACTTTATTTGTACAACCCAGATGTTTTCTTCTACTTTTCTTTTACTCCCTGATGTAGTGTTATTCCAACATTTCTCCATATGGGGGGGAAGAAAGAAGTCAACCCAAAATTGATCATTCTAATTCTTTTAAAACAAACTTCTCCCCGTTCGAAAAGCCCTCCTGAACAAGCAGAAAAGTAATAGAGAAATTGGGAATAATCATCAAAGGAAAAGAAATCCACAACTTGAAAATTTCATTATGTGAAAAATTATTACTTTTTATATTGTAGTTATCTATTGTATAAGAGTATTATACTGTTCACACTGTTAAGTAAGTATACCAAACTTTATATTTTAAATTAGGAAGATTAGAAACCAAAATCATGTCCTTTGTAGCCTATCAATTCTATGAACTTTTTCAATGTGGCATACCTTTCATATTTTGCTAAGACTCGATATTTCATACATTTTCTTTTAACAATGCACCTCCAATATTTGATAGTTTGG

Coding sequence (CDS)

ATGGCTACTTCTATATCCTCTCTTGCATTTTCTCTATCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTCTCCTTTCCCCGTTCAAAATCTCTTCTGATTTCCCCTTCCTCCTCTACTTCCTCACTTGTCGTATCTGCCTCCGCCGCTGCCGTTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTTGCTGCTCAGACGCTTTTTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGTGAAGGCACTGGCAAAGTTATTATCAATTACCGCGAAGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATATGAAAGTAGCTACGATGTATTCGTGAAGGCTGAAGGAGGCGGGCTATCTGGCCAGGCACAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACGCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGA

Protein sequence

MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQFSKR*
Homology
[Close]
BLAST of CSPI03G42420 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-74
Identity = 155/206 (75.24%), Postives = 179/206 (86.89%), Query Frame = 0 

Query: 4   SISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSST--SSLVVSASAAA---VVE 63
           SI++LA SLSSLSFSSQVS +P+ +SFPR+ S+   P+ S   +SL ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLW 123
             +LK +VKS LPGGFAAQ + GTGRRK A+ARVVL+EGTGKVIINYR+AKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVK+PLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDARVVERKKAGLKKARKAPQFSKR 205
           TRDARVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of CSPI03G42420 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-70
Identity = 148/208 (71.15%), Postives = 171/208 (82.21%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAA----V 60
           MA SISSL  S +SLSF+S ++ KP  L   R+K   +S  +    LV++A++A     V
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNP 120
            ETADL+ FVKS LPGGFAAQT+ GTGRRK A+ARVVL+EGTGK IINYR+AKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDARVVERKKAGLKKARKAPQFSKR 205
           LLTRD+R+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]
BLAST of CSPI03G42420 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0 

Query: 81  GTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVK 140
           GTGRRKSAVARV L  G+G++ IN R   +YLQ NP++L  VK PL TLG E+SYD++V 
Sbjct: 14  GTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYVN 73

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQ 200
           A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAPQ
Sbjct: 74  ATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAPQ 133

Query: 201 FSKR 205
           +SKR
Sbjct: 134 YSKR 137

[Close]
BLAST of CSPI03G42420 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-35
Identity = 82/124 (66.13%), Postives = 93/124 (75.00%), Query Frame = 0 

Query: 81  GTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVK 140
           GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ VK
Sbjct: 14  GTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIVK 73

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQ 200
           A GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRD+RV ERKK GLKKARKAPQ
Sbjct: 74  AVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAPQ 133

Query: 201 FSKR 205
           FSKR
Sbjct: 134 FSKR 137

[Close]
BLAST of CSPI03G42420 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.8e-34
Identity = 75/125 (60.00%), Postives = 94/125 (75.20%), Query Frame = 0 

Query: 80  FGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFV 139
           +GTGRRK+AVARV L  GTG++ +N ++   Y Q NP +L  +K PL TLG E+ YD+ V
Sbjct: 14  WGTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILV 73

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAP 199
           KAEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAP
Sbjct: 74  KAEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAP 133

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 134 QYSKR 138

[Close]
BLAST of CSPI03G42420 vs. ExPASy TrEMBL
Match: A0A0A0LDS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854240 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.8e-97
Identity = 203/204 (99.51%), Postives = 204/204 (100.00%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVV+ASAAAVVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           DARVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.3e-94
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLISPSSSTS L+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.3e-94
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLISPSSSTS L+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 9.5e-86
Identity = 178/204 (87.25%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP+ LSFPRSKSL+IS   ++S LVVSASAA  VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTL GTGRRKSA+ARVV++EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P+ALSFPRSKSL+IS S S S LVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. NCBI nr
Match: XP_004147796.1 (30S ribosomal protein S9, chloroplastic [Cucumis sativus] >KGN59928.1 hypothetical protein Csa_002564 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 3.8e-97
Identity = 203/204 (99.51%), Postives = 204/204 (100.00%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVV+ASAAAVVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           DARVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. NCBI nr
Match: XP_008466625.1 (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo] >KAA0051696.1 30S ribosomal protein S9 [Cucumis melo var. makuwa] >TYJ97914.1 30S ribosomal protein S9 [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 8.8e-94
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLISPSSSTS L+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 344.4 bits (882), Expect = 7.0e-91
Identity = 190/204 (93.14%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATS+SSLAFSLSSLSFSSQVSHKP+ALSFPRSKSL IS +SST+ LVVSASAAA VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DL++FVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 326.2 bits (835), Expect = 2.0e-85
Identity = 178/204 (87.25%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP+ LSFPRSKSL+IS   ++S LVVSASAA  VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTL GTGRRKSA+ARVV++EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 325.1 bits (832), Expect = 4.4e-85
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVSASAAAVVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P+ALSFPRSKSL+IS S S S LVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CSPI03G42420 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-75
Identity = 155/206 (75.24%), Postives = 179/206 (86.89%), Query Frame = 0 

Query: 4   SISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSST--SSLVVSASAAA---VVE 63
           SI++LA SLSSLSFSSQVS +P+ +SFPR+ S+   P+ S   +SL ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLW 123
             +LK +VKS LPGGFAAQ + GTGRRK A+ARVVL+EGTGKVIINYR+AKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVK+PLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDARVVERKKAGLKKARKAPQFSKR 205
           TRDARVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of CSPI03G42420 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-17
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 0 

Query: 80  FGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKI--PLVTLGYESSYDV 139
           +GTGRRK ++ARV ++ G GK  +N +E   Y    P+      +  PL        +D+
Sbjct: 307 YGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYF---PMLDHRAALLRPLAETKTLGRWDI 366

Query: 140 FVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARK 199
               +GGG +GQ  AI LGI+RAL     D R+ L+  G LTRD+RVVERKK G  KARK
Sbjct: 367 KCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVERKKPGKAKARK 426

Query: 200 APQFSKR 205
           + Q+ KR
Sbjct: 427 SFQWVKR 430

The following BLAST results are available for this feature:
BLAST of CSPI03G42420 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XJ272.1e-7475.2430S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ... [more]
P822781.9e-7071.1530S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE... [more]
Q8DMK71.5e-3563.7130S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
Q9MUV13.3e-3566.1330S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE... [more]
B2ITM74.8e-3460.0030S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O... [more]
BLAST of CSPI03G42420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDS01.8e-9799.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854240 PE=3 SV=1[more]
A0A5A7UBW54.3e-9495.5930S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CRR04.3e-9495.5930S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ... [more]
A0A6J1CNY09.5e-8687.2530S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1J3K22.1e-8588.2430S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481... [more]
BLAST of CSPI03G42420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147796.13.8e-9799.5130S ribosomal protein S9, chloroplastic [Cucumis sativus] >KGN59928.1 hypothetic... [more]
XP_008466625.18.8e-9495.59PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo] >KAA0051696.1 ... [more]
XP_038903352.17.0e-9193.1430S ribosomal protein S9, chloroplastic [Benincasa hispida][more]
XP_022143016.12.0e-8587.2530S ribosomal protein S9, chloroplastic [Momordica charantia][more]
XP_022982074.14.4e-8588.2430S ribosomal protein S9, chloroplastic [Cucurbita maxima][more]
BLAST of CSPI03G42420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74970.11.5e-7575.24ribosomal protein S9 [more]
AT3G49080.12.4e-1743.31Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 70..204
e-value: 4.9E-49
score: 167.9
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 83..204
e-value: 1.8E-41
score: 141.4
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 60..204
NoneNo IPR availablePANTHERPTHR21569:SF128S RIBOSOMAL PROTEIN S9, MITOCHONDRIALcoord: 60..204
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 143..161
IPR023035Ribosomal protein S9, bacterial/plastidHAMAPMF_00532_BRibosomal_S9_Bcoord: 74..204
score: 32.722252
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 79..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42420.1CSPI03G42420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome