CSPI03G42120 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G42120
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NAC domain protein
Location	Chr3: 36184661 .. 36185179 (-)
RNA-Seq Expression	CSPI03G42120
Synteny	CSPI03G42120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCCACCTTTCTTCTCCAAATTTTCCATCTCCCTCTTCAATTTTAATTATTCAAACAAAGACAAAGAAAGAAAAAAAAATGCCCACCATTTTTCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCGATAATGTCTATGGCGGAAAGTTAATTGATTAATTTTGTTTTTTGGGATTATTCTTTGATTCTTATTCAACAAATTTCTGGGATTTTCTTTGTATGTATGGAGTATCTATGGATGATTCAGTTACTCATTTTTGGAGTGAAATTTCGGAATCCTTCGTGGTTTTGTT

mRNA sequence

AATTCCACCTTTCTTCTCCAAATTTTCCATCTCCCTCTTCAATTTTAATTATTCAAACAAAGACAAAGAAAGAAAAAAAAATGCCCACCATTTTTCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCGATAATGTCTATGGCGGAAAGTTAATTGATTAATTTTGTTTTTTGGGATTATTCTTTGATTCTTATTCAACAAATTTCTGGGATTTTCTTTGTATGTATGGAGTATCTATGGATGATTCAGTTACTCATTTTTGGAGTGAAATTTCGGAATCCTTCGTGGTTTTGTT

Coding sequence (CDS)

ATGCCCACCATTTTTCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCGATAATGTCTATGGCGGAAAGTTAA

Protein sequence

MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES*

Homology

[Close]

BLAST of CSPI03G42120 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of CSPI03G42120 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of CSPI03G42120 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MPTIFQSQP------PPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q       P R++P    R    N+A       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTIRRLPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
            +P DR RR+Q +RE+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CSPI03G42120 vs. ExPASy TrEMBL
Match: B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 1   MPTIFQSQ-----PPPRRTPSVAGREPGRNRAV-------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q      PP R     G    RN  V       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
            +P D+ RRNQ + E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CSPI03G42120 vs. ExPASy TrEMBL
Match: A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 8   QPPPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGS 67
           QPP R++     R    N+        RSTC   +  G VR  ++   +P D+ RRNQ +
Sbjct: 14  QPPARQSLGEGNRVRRNNQEASISPRPRSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQAN 73

Query: 68  REVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
            E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 74  TEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CSPI03G42120 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of CSPI03G42120 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAEN 98

[Close]

BLAST of CSPI03G42120 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-44
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of CSPI03G42120 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.1e-31
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSV---AGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRR 60
          MPTIFQSQP P R PS+   AGREP  +R++RSTCRSFSF GMVR GRN+M   GD+ RR
Sbjct: 1  MPTIFQSQPQPDRRPSLAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRR 60

Query: 61 NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          NQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 61 NQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 99

[Close]

BLAST of CSPI03G42120 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTA-AGDKLRRL 60

Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]

BLAST of CSPI03G42120 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 47/100 (47.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 12  RRTPSVAGRE-PGRNRAVRSTCRSFSFGGMVRGGRNLMALPGD-RCRR------------ 71
           RR PS  G E PGR+   R   RS   G  VR        PG  +C R            
Sbjct: 5   RRIPSGEGVEMPGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLM 64

Query: 72  ---NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMS 95
              + GSREVLRRAL PP RR  LRW+NFRPTPSRL  MS
Sbjct: 65  RKASDGSREVLRRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:

BLAST of CSPI03G42120 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G42120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD23	1.1e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
A0A5A7T5L7	1.5e-44	94.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6N2MHB8	2.0e-12	48.15	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=...	[more]
B9N1L2	4.4e-12	48.15	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ...	[more]
A0A4U5P590	1.3e-11	48.42	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1	[more]

BLAST of CSPI03G42120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652880.1	2.3e-47	100.00	uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
KGN60027.2	5.1e-47	98.98	hypothetical protein Csa_001878 [Cucumis sativus]	[more]
KAA0036871.1	3.1e-44	94.90	uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAG7024857.1	5.1e-31	74.26	hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607862.1	1.2e-24	69.39	hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G42120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15518.1	8.2e-11	47.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G42120.1	CSPI03G42120.1	mRNA