CSPI03G42100 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G42100
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 36169010 .. 36169507 (+)
RNA-Seq ExpressionCSPI03G42100
SyntenyCSPI03G42100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTTTTTCTTTTCACTCTCATGCTTTCCATCAATGGTAATTAATTACACCACTATTTATCAACCCTTTCCCCCACTCTTAATTTTTTTATCTCAAACAAAATTTTGGCGACAATAAAATTTTTAAATTATTGTTAAAAACAAACCACATAAGAAAGTACACATAAGTAAAAAGAAACTTATTTAATTTGTATACAGCATAATTTTTGTTTTTGTTTTCTTTTTCTCTTTTGTGGCTCACGGTGACCACAGAAAAGGGAGGGGGTGTGGAGGCAATGTTGTGTAAGGAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCAACAAACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTCATGAATTTTGA

mRNA sequence

ATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGAAAAGGGAGGGGGTGTGGAGGCAATGTTGTGTAAGGAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCAACAAACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTCATGAATTTTGA

Coding sequence (CDS)

ATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGAAAAGGGAGGGGGTGTGGAGGCAATGTTGTGTAAGGAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCAACAAACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACGTTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTCATGAATTTTGA

Protein sequence

MGKVVGNSAKMKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLERLVIATTTVENHAIIPHEF*
Homology
[Close]
BLAST of CSPI03G42100 vs. ExPASy TrEMBL
Match: A0A0A0LDM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851930 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 11 MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLERLVIATTTVE 70
          MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLE+LVIATTTVE
Sbjct: 1  MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVE 60

Query: 71 NHAIIPHEF 80
          NHAIIPHEF
Sbjct: 61 NHAIIPHEF 69

[Close]
BLAST of CSPI03G42100 vs. NCBI nr
Match: KAE8651310.1 (hypothetical protein Csa_023517, partial [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 12 KREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLERLVIATTTVEN 71
          KREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLE+LVIATTTVEN
Sbjct: 1  KREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVEN 60

Query: 72 HAIIPHEF 80
          HAIIPHEF
Sbjct: 61 HAIIPHEF 68

[Close]
BLAST of CSPI03G42100 vs. NCBI nr
Match: KAG6591982.1 (hypothetical protein SDJN03_14328, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 15  GVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLERLVIATTTVENHAI 74
           G WRQ C R GARRG+  A +RAIA +NARIGKV   ELA   FLE LV AT+TVE+  I
Sbjct: 47  GWWRQRCARGGARRGQGGAGTRAIAIDNARIGKVPNKELAMPNFLEGLVFATSTVEDLMI 106

Query: 75  I 76
           I
Sbjct: 107 I 107

The following BLAST results are available for this feature:
BLAST of CSPI03G42100 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G42100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDM91.2e-2898.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851930 PE=4 SV=1[more]
BLAST of CSPI03G42100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651310.11.2e-2798.53hypothetical protein Csa_023517, partial [Cucumis sativus][more]
KAG6591982.15.4e-0762.30hypothetical protein SDJN03_14328, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI03G42100 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42100.1CSPI03G42100.1mRNA