CSPI03G41800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G41800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Golgin subfamily A member 6-like protein 22 isoform X2
Location	Chr3: 35886597 .. 35887204 (+)
RNA-Seq Expression	CSPI03G41800
Synteny	CSPI03G41800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAGACTTCTGTGTCCTTTTCCTTTGGGTTCCGTCATCATTTGTCCAATAGGAAAATGACATAAGTGACCTCTCTTCTTTCTTTGCTCGAGGGCTGTGATTTTAGCGTGGGAAGAATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAGGAGTTTGATGTTAGCTTCGCTGGTCAAAGAAGTATTTGTGTGTTGATCAAGAAATTCCTCCTCCATCCGCTTTTCAAAAAGGCTGTTTTTTGTCGCTTGCTAGCGTGTATTTGGAATATTTGAGGGAGAGGAATGATAAGGTATTTAGAGGAAGAGATAGGAGCCCTTATGATGTTTGGT

mRNA sequence

CTGAGACTTCTGTGTCCTTTTCCTTTGGGTTCCGTCATCATTTGTCCAATAGGAAAATGACATAAGTGACCTCTCTTCTTTCTTTGCTCGAGGGCTGTGATTTTAGCGTGGGAAGAATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAGGAGTTTGATGTTAGCTTCGCTGGTCAAAGAAGTATTTGTGTGTTGATCAAGAAATTCCTCCTCCATCCGCTTTTCAAAAAGGCTGTTTTTTGTCGCTTGCTAGCGTGTATTTGGAATATTTGAGGGAGAGGAATGATAAGGTATTTAGAGGAAGAGATAGGAGCCCTTATGATGTTTGGT

Coding sequence (CDS)

ATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAG

Protein sequence

MDVHIWSPNPSQGFSCNSLFNLLDPPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVLFL*

Homology

[Close]

BLAST of CSPI03G41800 vs. ExPASy TrEMBL
Match: A0A5D3E255 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold588G00180 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 2   DVHIWSPNPSQGFSCNSLFN-LLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTM 61
           +VH+WS NPSQGFS  SLF+ LLDP P    +F+ VWRIK  KKVRFF W VL+   N +
Sbjct: 189 NVHVWSANPSQGFSSKSLFSLLLDPSPTREFVFYAVWRIKVCKKVRFFTWQVLLDRANIV 248

Query: 62  DILARKKSSFVGPFCCILSGRRRK 84
           D L R+        CCIL  + ++
Sbjct: 249 DRLVRRGEPRWSSNCCILCRKAKE 272

[Close]

BLAST of CSPI03G41800 vs. ExPASy TrEMBL
Match: A0A1S3CMM8 (uncharacterized protein LOC103502543 OS=Cucumis melo OX=3656 GN=LOC103502543 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-11
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 2   DVHIWSPNPSQGFSCNSLFNLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMD 61
           D+H+W+PNPS GFS  SL  LLDP P    +F +VW     KKV FFIW VL+  VN +D
Sbjct: 203 DIHVWNPNPSWGFSMFSL--LLDPAPTKELVFDVVWSTNVPKKVMFFIWQVLLDQVNIVD 262

Query: 62  ILARKKSSFVGPFCCIL 78
            L R+++S VG FCC+L
Sbjct: 263 RLVRRRTSLVGLFCCML 277

[Close]

BLAST of CSPI03G41800 vs. ExPASy TrEMBL
Match: A0A5A7UL95 (Golgin subfamily A member 6-like protein 22 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00300 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 2   DVHIWSPNPSQGFSCNSLF-NLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTM 61
           DV + +PNPS GF C SLF  LLDP P    +F +V R K  KKVRFF W VL+  V  M
Sbjct: 455 DVRVRTPNPSMGFICKSLFILLLDPSPYFEFVFDVVGRTKVPKKVRFFNWQVLLGRV--M 514

Query: 62  DILARKKSSFVGPFCCILSGRRRKTCIIFFGIA 93
           D L RK++S + PFCCIL  +     II FGIA
Sbjct: 515 DRLVRKRTSLISPFCCILCRK-----IIVFGIA 540

[Close]

BLAST of CSPI03G41800 vs. ExPASy TrEMBL
Match: A0A5A7UMB2 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005030 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.9e-07
Identity = 40/92 (43.48%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 11  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSF 70
           S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +    
Sbjct: 864 SLGFSL-----LLDLSPYYELIFYVVWRAKVPKKVRFFIWQVLLGCVNMWIVLLGRGLRL 923

Query: 71  VGPFCCILSGRRRKTCIIFFGIASSCGLCGVL 102
              F     GR RK  IIF+G  +  G CG L
Sbjct: 924 SAIFVACFVGRWRKILIIFYGTTTMGGQCGAL 950

[Close]

BLAST of CSPI03G41800 vs. ExPASy TrEMBL
Match: A0A5D3C9P5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00120 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.9e-07
Identity = 40/92 (43.48%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 11   SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSF 70
            S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +    
Sbjct: 2474 SLGFSL-----LLDLSPYYELIFYVVWRAKVPKKVRFFIWQVLLGCVNMWIVLLGRGLRL 2533

Query: 71   VGPFCCILSGRRRKTCIIFFGIASSCGLCGVL 102
               F     GR RK  IIF+G  +  G CG L
Sbjct: 2534 SAIFVACFVGRWRKILIIFYGTTTMGGQCGAL 2560

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: TYK29954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-11
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 2   DVHIWSPNPSQGFSCNSLFN-LLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTM 61
           +VH+WS NPSQGFS  SLF+ LLDP P    +F+ VWRIK  KKVRFF W VL+   N +
Sbjct: 189 NVHVWSANPSQGFSSKSLFSLLLDPSPTREFVFYAVWRIKVCKKVRFFTWQVLLDRANIV 248

Query: 62  DILARKKSSFVGPFCCILSGRRRK 84
           D L R+        CCIL  + ++
Sbjct: 249 DRLVRRGEPRWSSNCCILCRKAKE 272

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: XP_008464727.1 (PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 2   DVHIWSPNPSQGFSCNSLFNLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMD 61
           D+H+W+PNPS GFS  SL  LLDP P    +F +VW     KKV FFIW VL+  VN +D
Sbjct: 203 DIHVWNPNPSWGFSMFSL--LLDPAPTKELVFDVVWSTNVPKKVMFFIWQVLLDQVNIVD 262

Query: 62  ILARKKSSFVGPFCCIL 78
            L R+++S VG FCC+L
Sbjct: 263 RLVRRRTSLVGLFCCML 277

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: KAA0054311.1 (golgin subfamily A member 6-like protein 22 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 2   DVHIWSPNPSQGFSCNSLF-NLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTM 61
           DV + +PNPS GF C SLF  LLDP P    +F +V R K  KKVRFF W VL+  V  M
Sbjct: 455 DVRVRTPNPSMGFICKSLFILLLDPSPYFEFVFDVVGRTKVPKKVRFFNWQVLLGRV--M 514

Query: 62  DILARKKSSFVGPFCCILSGRRRKTCIIFFGIA 93
           D L RK++S + PFCCIL  +     II FGIA
Sbjct: 515 DRLVRKRTSLISPFCCILCRK-----IIVFGIA 540

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: KAA0054681.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 40/92 (43.48%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 11  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSF 70
           S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +    
Sbjct: 864 SLGFSL-----LLDLSPYYELIFYVVWRAKVPKKVRFFIWQVLLGCVNMWIVLLGRGLRL 923

Query: 71  VGPFCCILSGRRRKTCIIFFGIASSCGLCGVL 102
              F     GR RK  IIF+G  +  G CG L
Sbjct: 924 SAIFVACFVGRWRKILIIFYGTTTMGGQCGAL 950

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: TYK08591.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 40/92 (43.48%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 11   SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSF 70
            S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +    
Sbjct: 2474 SLGFSL-----LLDLSPYYELIFYVVWRAKVPKKVRFFIWQVLLGCVNMWIVLLGRGLRL 2533

Query: 71   VGPFCCILSGRRRKTCIIFFGIASSCGLCGVL 102
               F     GR RK  IIF+G  +  G CG L
Sbjct: 2534 SAIFVACFVGRWRKILIIFYGTTTMGGQCGAL 2560

The following BLAST results are available for this feature:

BLAST of CSPI03G41800 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G41800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E255	1.7e-11	50.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold58...	[more]
A0A1S3CMM8	2.3e-11	53.25	uncharacterized protein LOC103502543 OS=Cucumis melo OX=3656 GN=LOC103502543 PE=...	[more]
A0A5A7UL95	1.1e-10	52.69	Golgin subfamily A member 6-like protein 22 isoform X2 OS=Cucumis melo var. maku...	[more]
A0A5A7UMB2	9.9e-07	43.48	Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C9P5	9.9e-07	43.48	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI03G41800 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29954.1	3.6e-11	50.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_008464727.1	4.7e-11	53.25	PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]	[more]
KAA0054311.1	2.3e-10	52.69	golgin subfamily A member 6-like protein 22 isoform X2 [Cucumis melo var. makuwa...	[more]
KAA0054681.1	2.1e-06	43.48	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]
TYK08591.1	2.1e-06	43.48	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G41800 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G41800.1	CSPI03G41800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019222	regulation of metabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0016020	membrane