CSPI03G41680 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G41680
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Location	Chr3: 35768415 .. 35769236 (+)
RNA-Seq Expression	CSPI03G41680
Synteny	CSPI03G41680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATAGTTTGTCTCTGTGTCAATCTTATTACGTTGAAAAAATACTTAAGGAAATTTGATTCCTTCGATGTTTCCCTAGTAAGAGCTCTCTATGATGCAAGTAAACATCTTATAAAGAATAAGGGAGATAATGTGTCTCAACCTGAATATGCAAAGATCAAAGGTAGTATTTTGTATTTAATGAACTACACTAGACCTGATATTGCATACGTTGTTAATAAATTAAGTAGATATACACATAATCTTGATAGATGCCACTGGAAAGCTTTACATCATATGTTGAAATATCTTAAAGGGACAAAAAATTATCGTTGGTACTTTAACAAATTTCATGCCATATTAGAAGGATACTGTGATGCAAATTGGGTTACAGATAATGATGCGGTTAACTCTACTAGTGGCTATGTATTTTTGCTCAGAGGTGGAACAATCTCTTGGAAGTTTGCAAAACAAACTTGCATAGCTAAATCCACTATGGAATCTGAGTTTATCACATTAGAATTGGCAGAACAAGAGGCTGGGTGGATTAAAAGCCTGTTAGGAGATGTACCATTGTGGGGGACATCTGTACCTGTGTTCATACACTTTGATTCACAGGTTGCCATAGGTATTGCCAAGAACAATGATTATAATGGCAAAAGAAGACATATACATCTTAGGCATGGAGTTGTGAAACAACTGCTAAAGAAAGAAACTATTTTCTTAGAGTTTGTTCGGTCTGAGAGGAACCTAGTTGAACCTTTAACTAAAGGACTAACTAGAAAAGTGGTTCTAAATTCTTCAATGAACATGGGCCTAAAGCCCTTCAGTGATCTATAA

mRNA sequence

ATGAAAATAGTTTGTCTCTGTGTCAATCTTATTACGTTGAAAAAATACTTAAGGAAATTTGATTCCTTCGATGTTTCCCTAGTAAGAGCTCTCTATGATGCAAGTAAACATCTTATAAAGAATAAGGGAGATAATGTGTCTCAACCTGAATATGCAAAGATCAAAGGTAGTATTTTGTATTTAATGAACTACACTAGACCTGATATTGCATACGTTGTTAATAAATTAAGTAGATATACACATAATCTTGATAGATGCCACTGGAAAGCTTTACATCATATGTTGAAATATCTTAAAGGGACAAAAAATTATCGTTGGTACTTTAACAAATTTCATGCCATATTAGAAGGATACTGTGATGCAAATTGGGTTACAGATAATGATGCGGTTAACTCTACTAGTGGCTATGTATTTTTGCTCAGAGGTGGAACAATCTCTTGGAAGTTTGCAAAACAAACTTGCATAGCTAAATCCACTATGGAATCTGAGTTTATCACATTAGAATTGGCAGAACAAGAGGCTGGGTGGATTAAAAGCCTGTTAGGAGATGTACCATTGTGGGGGACATCTGTACCTGTGTTCATACACTTTGATTCACAGGTTGCCATAGGTATTGCCAAGAACAATGATTATAATGGCAAAAGAAGACATATACATCTTAGGCATGGAGTTGTGAAACAACTGCTAAAGAAAGAAACTATTTTCTTAGAGTTTGTTCGGTCTGAGAGGAACCTAGTTGAACCTTTAACTAAAGGACTAACTAGAAAAGTGGTTCTAAATTCTTCAATGAACATGGGCCTAAAGCCCTTCAGTGATCTATAA

Coding sequence (CDS)

ATGAAAATAGTTTGTCTCTGTGTCAATCTTATTACGTTGAAAAAATACTTAAGGAAATTTGATTCCTTCGATGTTTCCCTAGTAAGAGCTCTCTATGATGCAAGTAAACATCTTATAAAGAATAAGGGAGATAATGTGTCTCAACCTGAATATGCAAAGATCAAAGGTAGTATTTTGTATTTAATGAACTACACTAGACCTGATATTGCATACGTTGTTAATAAATTAAGTAGATATACACATAATCTTGATAGATGCCACTGGAAAGCTTTACATCATATGTTGAAATATCTTAAAGGGACAAAAAATTATCGTTGGTACTTTAACAAATTTCATGCCATATTAGAAGGATACTGTGATGCAAATTGGGTTACAGATAATGATGCGGTTAACTCTACTAGTGGCTATGTATTTTTGCTCAGAGGTGGAACAATCTCTTGGAAGTTTGCAAAACAAACTTGCATAGCTAAATCCACTATGGAATCTGAGTTTATCACATTAGAATTGGCAGAACAAGAGGCTGGGTGGATTAAAAGCCTGTTAGGAGATGTACCATTGTGGGGGACATCTGTACCTGTGTTCATACACTTTGATTCACAGGTTGCCATAGGTATTGCCAAGAACAATGATTATAATGGCAAAAGAAGACATATACATCTTAGGCATGGAGTTGTGAAACAACTGCTAAAGAAAGAAACTATTTTCTTAGAGTTTGTTCGGTCTGAGAGGAACCTAGTTGAACCTTTAACTAAAGGACTAACTAGAAAAGTGGTTCTAAATTCTTCAATGAACATGGGCCTAAAGCCCTTCAGTGATCTATAA

Protein sequence

MKIVCLCVNLITLKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVPVFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKGLTRKVVLNSSMNMGLKPFSDL*

Homology

[Close]

BLAST of CSPI03G41680 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.6e-31
Identity = 75/217 (34.56%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 39   IKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYL 98
            ++ KG N+++  Y+   GS++Y M  TRPDIA+ V  +SR+  N  + HW+A+  +L+YL
Sbjct: 1100 VEEKG-NMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYL 1159

Query: 99   KGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQTCIAKS 158
            +GT      F     IL+GY DA+   D D   S++GY+F   GG ISW+   Q C+A S
Sbjct: 1160 RGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALS 1219

Query: 159  TMESEFITLELAEQEAGWIKSLLGDVPLWGTSVPVFIHFDSQVAIGIAKNNDYNGKRRHI 218
            T E+E+I      +E  W+K  L ++ L      V+   DSQ AI ++KN+ Y+ + +HI
Sbjct: 1220 TTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYC--DSQSAIDLSKNSMYHARTKHI 1279

Query: 219  HLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKGLTR 256
             +R+  +++++  E++ +  + +  N  + LTK + R
Sbjct: 1280 DVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPR 1313

[Close]

BLAST of CSPI03G41680 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 77/235 (32.77%), Postives = 125/235 (53.19%), Query Frame = 0


Query: 35   SKHLIKNKGDNVSQP-EYAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHH 94
            S  L  + G  +  P EY  I GS+ YL  +TRPD++Y VN+LS+Y H     HW AL  
Sbjct: 1211 SPKLTLHSGTKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKR 1270

Query: 95   MLKYLKGTKNYRWYFNKFHAI-LEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQ 154
            +L+YL GT ++  +  K + + L  Y DA+W  D D   ST+GY+  L    ISW   KQ
Sbjct: 1271 VLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQ 1330

Query: 155  TCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVPVFIHFDSQVAIGIAKNNDYN 214
              + +S+ E+E+ ++     E  WI SLL ++ +  +  PV I+ D+  A  +  N  ++
Sbjct: 1331 KGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPV-IYCDNVGATYLCANPVFH 1390

Query: 215  GKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKGLTRKVVLNSSMNMGL 268
             + +HI L +  ++  ++   + +  V +   L + LTK L+R    N S  +G+
Sbjct: 1391 SRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of CSPI03G41680 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-26
Identity = 74/227 (32.60%), Postives = 123/227 (54.19%), Query Frame = 0


Query: 43   GDNVSQP-EYAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYLKGT 102
            G  ++ P EY  I GS+ YL  +TRPDI+Y VN+LS++ H     H +AL  +L+YL GT
Sbjct: 1236 GTKLTDPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGT 1295

Query: 103  KNYRWYFNKFHAI-LEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQTCIAKSTM 162
             N+  +  K + + L  Y DA+W  D D   ST+GY+  L    ISW   KQ  + +S+ 
Sbjct: 1296 PNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSST 1355

Query: 163  ESEFITLELAEQEAGWIKSLLGDVPLWGTSVPVFIHFDSQVAIGIAKNNDYNGKRRHIHL 222
            E+E+ ++     E  WI SLL ++ +  T  PV I+ D+  A  +  N  ++ + +HI +
Sbjct: 1356 EAEYRSVANTSSEMQWICSLLTELGIRLTRPPV-IYCDNVGATYLCANPVFHSRMKHIAI 1415

Query: 223  RHGVVKQLLKKETIFLEFVRSERNLVEPLTKGLTRKVVLNSSMNMGL 268
             +  ++  ++   + +  V +   L + LTK L+R    N +  +G+
Sbjct: 1416 DYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of CSPI03G41680 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 76/246 (30.89%), Postives = 130/246 (52.85%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRA-LYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAY 72
            +KK L KF+  + + V   L     + + N  ++ + P  + I G ++Y+M  TRPD+  
Sbjct: 1143 VKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLI-GCLMYIMLCTRPDLTT 1202

Query: 73   VVNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNK---FHAILEGYCDANWVTDND 132
             VN LSRY+   +   W+ L  +L+YLKGT + +  F K   F   + GY D++W     
Sbjct: 1203 AVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEI 1262

Query: 133  AVNSTSGYVF-LLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLW 192
               ST+GY+F +     I W   +Q  +A S+ E+E++ L  A +EA W+K LL  + + 
Sbjct: 1263 DRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI- 1322

Query: 193  GTSVPVFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVE 252
                P+ I+ D+Q  I IA N   + + +HI +++   ++ ++   I LE++ +E  L +
Sbjct: 1323 KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLAD 1382

Query: 253  PLTKGL 254
              TK L
Sbjct: 1383 IFTKPL 1386

[Close]

BLAST of CSPI03G41680 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-22
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 51  YAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNK 110
           Y    G+I+YLM  TRPD+A  V  LS++  +    HW+AL  +L+YL+ T+ Y   F +
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 111 F-HAILEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLEL 170
              A L GY DA+W  D ++  STSGY+F L GG +SW+  KQ  +A S+ E E++ L  
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSE 125

Query: 171 AEQEAGWI 178
           A QEA W+
Sbjct: 126 ATQEAVWL 133

[Close]

BLAST of CSPI03G41680 vs. ExPASy TrEMBL
Match: A0A5A7ULG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00390 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 2.1e-112
Identity = 202/260 (77.69%), Postives = 224/260 (86.15%), Query Frame = 0


Query: 13  LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
           ++K L+KFDSFDVS VR L+DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 722 VEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 781

Query: 73  VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
           V++LSRYTHN +R HW  LHH+L+YLKGT +Y  +FNKFH +LEGYCDANWVTDND VNS
Sbjct: 782 VSRLSRYTHNPNRYHWDVLHHLLRYLKGTIDYCLHFNKFHVVLEGYCDANWVTDNDEVNS 841

Query: 133 TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
           TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 842 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIVLELAGQEAEWIKNLLGDVPLWGTSVP 901

Query: 193 VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
           V I  DSQ AI  AKN+ YNGK RHI LRH VVKQLLK+ TIFLEFVRSE+NL  PLTKG
Sbjct: 902 VSIQCDSQAAICTAKNSVYNGKNRHIRLRHAVVKQLLKEGTIFLEFVRSEKNLANPLTKG 961

Query: 253 LTRKVVLNSSMNMGLKPFSD 273
           LTRK+VL+SSMNMGLKPF D
Sbjct: 962 LTRKMVLDSSMNMGLKPFGD 981

[Close]

BLAST of CSPI03G41680 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 6.3e-109
Identity = 199/260 (76.54%), Postives = 223/260 (85.77%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
            ++K L+KFDSFDVS VR  +DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAYV
Sbjct: 803  VEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYV 862

Query: 73   VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
            V++LSRYTHN +R HW AL H+L+YLKGT +Y  +F KF A+LEGYCDANWVTDND VNS
Sbjct: 863  VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNS 922

Query: 133  TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
            TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 923  TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVP 982

Query: 193  VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
            V I  DSQ AI  AKN+ YNGK RHI LRH VVKQLLK+ TI LEFVRSE+NL +PLTKG
Sbjct: 983  VSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKG 1042

Query: 253  LTRKVVLNSSMNMGLKPFSD 273
            LTRK+VL+SS+NMGLKPF D
Sbjct: 1043 LTRKMVLDSSVNMGLKPFGD 1062

[Close]

BLAST of CSPI03G41680 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.1e-108
Identity = 198/260 (76.15%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
            ++K L+KFDSFDVS VR  +DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 907  VEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 966

Query: 73   VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
            V++LSRYTHN +R HW AL H+L+YLKGT +Y  +F KF A+LEGYCDANWVTDND VNS
Sbjct: 967  VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNS 1026

Query: 133  TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
            TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 1027 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELARQEAEWIKNLLGDVPLWGTSVP 1086

Query: 193  VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
            V I  DSQ AI  AKN+ YNGK RHI LRH VVKQLLK+ TI LEFVRSE+NL +PLTKG
Sbjct: 1087 VSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKG 1146

Query: 253  LTRKVVLNSSMNMGLKPFSD 273
            LTRK+VL+SS+NMGLKPF D
Sbjct: 1147 LTRKMVLDSSVNMGLKPFGD 1166

[Close]

BLAST of CSPI03G41680 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.4e-108
Identity = 197/260 (75.77%), Postives = 220/260 (84.62%), Query Frame = 0


Query: 13  LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
           ++K L+KFD FDVS VR  +DASKHL+KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 46  VEKILKKFDFFDVSPVRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 105

Query: 73  VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
           V++LSRYTHN DR HW  L H+L+YLKGT +Y  YFNKF A+LEGYCDANWVTDND VNS
Sbjct: 106 VSRLSRYTHNPDRYHWDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNS 165

Query: 133 TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
           TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGT VP
Sbjct: 166 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVP 225

Query: 193 VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
           V I  DSQ AI  AKN+ YNGK RHI L+H VVKQLLKK TI  +FVRSE+NL +PLTKG
Sbjct: 226 VSIQCDSQAAICTAKNSVYNGKSRHIRLKHAVVKQLLKKGTISFKFVRSEKNLADPLTKG 285

Query: 253 LTRKVVLNSSMNMGLKPFSD 273
           LTRK+VL+SSMNMGLKPF D
Sbjct: 286 LTRKMVLDSSMNMGLKPFGD 305

[Close]

BLAST of CSPI03G41680 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.4e-108
Identity = 197/260 (75.77%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
            ++K L+KFDSFDVS VR  +DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 1086 VEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 1145

Query: 73   VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
            V++LSRYTHN +R HW AL H+L+YLKGT +Y  +F KF A+LEGYCDANWVTDND VNS
Sbjct: 1146 VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNS 1205

Query: 133  TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
            TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 1206 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVP 1265

Query: 193  VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
            V I  DSQ AI  AKN+ YNGK RH+ LRH VVKQLLK+ TI LEFVRSE+NL +PLTKG
Sbjct: 1266 VSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKG 1325

Query: 253  LTRKVVLNSSMNMGLKPFSD 273
            LTRK+VL+SS+NMGLKPF D
Sbjct: 1326 LTRKMVLDSSVNMGLKPFGD 1345

[Close]

BLAST of CSPI03G41680 vs. NCBI nr
Match: KAA0056672.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK04631.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 415.2 bits (1066), Expect = 4.3e-112
Identity = 202/260 (77.69%), Postives = 224/260 (86.15%), Query Frame = 0


Query: 13  LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
           ++K L+KFDSFDVS VR L+DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 722 VEKILKKFDSFDVSPVRTLFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 781

Query: 73  VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
           V++LSRYTHN +R HW  LHH+L+YLKGT +Y  +FNKFH +LEGYCDANWVTDND VNS
Sbjct: 782 VSRLSRYTHNPNRYHWDVLHHLLRYLKGTIDYCLHFNKFHVVLEGYCDANWVTDNDEVNS 841

Query: 133 TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
           TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 842 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIVLELAGQEAEWIKNLLGDVPLWGTSVP 901

Query: 193 VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
           V I  DSQ AI  AKN+ YNGK RHI LRH VVKQLLK+ TIFLEFVRSE+NL  PLTKG
Sbjct: 902 VSIQCDSQAAICTAKNSVYNGKNRHIRLRHAVVKQLLKEGTIFLEFVRSEKNLANPLTKG 961

Query: 253 LTRKVVLNSSMNMGLKPFSD 273
           LTRK+VL+SSMNMGLKPF D
Sbjct: 962 LTRKMVLDSSMNMGLKPFGD 981

[Close]

BLAST of CSPI03G41680 vs. NCBI nr
Match: TYK23349.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-108
Identity = 199/260 (76.54%), Postives = 223/260 (85.77%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
            ++K L+KFDSFDVS VR  +DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAYV
Sbjct: 803  VEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYV 862

Query: 73   VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
            V++LSRYTHN +R HW AL H+L+YLKGT +Y  +F KF A+LEGYCDANWVTDND VNS
Sbjct: 863  VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNS 922

Query: 133  TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
            TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 923  TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVP 982

Query: 193  VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
            V I  DSQ AI  AKN+ YNGK RHI LRH VVKQLLK+ TI LEFVRSE+NL +PLTKG
Sbjct: 983  VSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKG 1042

Query: 253  LTRKVVLNSSMNMGLKPFSD 273
            LTRK+VL+SS+NMGLKPF D
Sbjct: 1043 LTRKMVLDSSVNMGLKPFGD 1062

[Close]

BLAST of CSPI03G41680 vs. NCBI nr
Match: TYK26791.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 2.2e-108
Identity = 198/260 (76.15%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
            ++K L+KFDSFDVS VR  +DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 907  VEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 966

Query: 73   VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
            V++LSRYTHN +R HW AL H+L+YLKGT +Y  +F KF A+LEGYCDANWVTDND VNS
Sbjct: 967  VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNS 1026

Query: 133  TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
            TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 1027 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELARQEAEWIKNLLGDVPLWGTSVP 1086

Query: 193  VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
            V I  DSQ AI  AKN+ YNGK RHI LRH VVKQLLK+ TI LEFVRSE+NL +PLTKG
Sbjct: 1087 VSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKG 1146

Query: 253  LTRKVVLNSSMNMGLKPFSD 273
            LTRK+VL+SS+NMGLKPF D
Sbjct: 1147 LTRKMVLDSSVNMGLKPFGD 1166

[Close]

BLAST of CSPI03G41680 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 402.5 bits (1033), Expect = 2.9e-108
Identity = 197/260 (75.77%), Postives = 220/260 (84.62%), Query Frame = 0


Query: 13  LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
           ++K L+KFD FDVS VR  +DASKHL+KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 46  VEKILKKFDFFDVSPVRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 105

Query: 73  VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
           V++LSRYTHN DR HW  L H+L+YLKGT +Y  YFNKF A+LEGYCDANWVTDND VNS
Sbjct: 106 VSRLSRYTHNPDRYHWDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNS 165

Query: 133 TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
           TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGT VP
Sbjct: 166 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVP 225

Query: 193 VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
           V I  DSQ AI  AKN+ YNGK RHI L+H VVKQLLKK TI  +FVRSE+NL +PLTKG
Sbjct: 226 VSIQCDSQAAICTAKNSVYNGKSRHIRLKHAVVKQLLKKGTISFKFVRSEKNLADPLTKG 285

Query: 253 LTRKVVLNSSMNMGLKPFSD 273
           LTRK+VL+SSMNMGLKPF D
Sbjct: 286 LTRKMVLDSSMNMGLKPFGD 305

[Close]

BLAST of CSPI03G41680 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 4.9e-108
Identity = 197/260 (75.77%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 13   LKKYLRKFDSFDVSLVRALYDASKHLIKNKGDNVSQPEYAKIKGSILYLMNYTRPDIAYV 72
            ++K L+KFDSFDVS VR  +DASKHL KNKGD+VSQPEYAKI GS++YLMNYTRPDIAY 
Sbjct: 907  VEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYA 966

Query: 73   VNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAILEGYCDANWVTDNDAVNS 132
            V++LSRYTHN +R HW AL H+L+YLKGT +Y  +F KF A+LEGYCDANWVTDND VNS
Sbjct: 967  VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNS 1026

Query: 133  TSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLELAEQEAGWIKSLLGDVPLWGTSVP 192
            TSGYVFLL GG ISWK  KQTCIA+STMESEFI LELA QEA WIK+LLGDVPLWGTSVP
Sbjct: 1027 TSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVP 1086

Query: 193  VFIHFDSQVAIGIAKNNDYNGKRRHIHLRHGVVKQLLKKETIFLEFVRSERNLVEPLTKG 252
            V I  DSQ AI  AKN+ YNGK RH+ LRH VVKQLLK+ TI LEFVRSE+NL +PLTKG
Sbjct: 1087 VSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKG 1146

Query: 253  LTRKVVLNSSMNMGLKPFSD 273
            LTRK+VL+SS+NMGLKPF D
Sbjct: 1147 LTRKMVLDSSVNMGLKPFGD 1166

[Close]

BLAST of CSPI03G41680 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19
Identity = 62/198 (31.31%), Postives = 103/198 (52.02%), Query Frame = 0


Query: 43  GDNVSQPEYAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYLKGTK 102
           GD V    Y ++ G ++YL   TR DI++ VNKLS+++      H +A+  +L Y+KGT 
Sbjct: 370 GDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 429

Query: 103 NY-RWYFNKFHAILEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQTCIAKSTME 162
               +Y ++    L+ + DA++ +  D   ST+GY   L    ISWK  KQ  ++KS+ E
Sbjct: 430 GQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 489

Query: 163 SEFITLELAEQEAGWIKSLLGDVPLWGTSVPVFIHFDSQVAIGIAKNNDYNGKRRHIHLR 222
           +E+  L  A  E  W+     ++ L   S P  +  D+  AI IA N  ++ + +HI   
Sbjct: 490 AEYRALSFATDEMMWLAQFFRELQL-PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 549

Query: 223 -HGVVKQLLKKETIFLEF 239
            H V ++ + + T+   F
Sbjct: 550 CHSVRERSVYQATLSYSF 565

[Close]

BLAST of CSPI03G41680 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 39/128 (30.47%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 50  EYAKIKGSILYLMNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFN 109
           ++  I G++ YL   TRPDI+Y VN + +  H      +  L  +L+Y+KGT  +  Y +
Sbjct: 99  DFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIH 158

Query: 110 KFHAI-LEGYCDANWVTDNDAVNSTSGYVFLLRGGTISWKFAKQTCIAKSTMESEFITLE 169
           K   + ++ +CD++W        ST+G+   L    ISW   +Q  +++S+ E+E+  L 
Sbjct: 159 KNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 218

Query: 170 LAEQEAGW 177
           L   E  W
Sbjct: 219 LTAAELTW 225

[Close]

BLAST of CSPI03G41680 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.4e-04
Identity = 21/80 (26.25%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 62  MNYTRPDIAYVVNKLSRYTHNLDRCHWKALHHMLKYLKGTKNYRWYFNKFHAI-LEGYCD 121
           +  TRPD+ + VN+LS+++        +A++ +L Y+KGT     +++    + L+ + D
Sbjct: 3   LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62

Query: 122 ANWVTDNDAVNSTSGYVFLL 141
           ++W +  D   S +G+  L+
Sbjct: 63  SDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of CSPI03G41680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.6e-31	34.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.0e-27	32.77	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.7e-26	32.60	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.6e-24	30.89	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	7.3e-22	42.97	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of CSPI03G41680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULG5	2.1e-112	77.69	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJE2	6.3e-109	76.54	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DSQ3	1.1e-108	76.15	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U7W6	1.4e-108	75.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C5T2	2.4e-108	75.77	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI03G41680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056672.1	4.3e-112	77.69	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK04631.1 ty1-cop...	[more]
TYK23349.1	1.3e-108	76.54	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26791.1	2.2e-108	76.15	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049695.1	2.9e-108	75.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04394.1	4.9e-108	75.77	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G41680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-19	31.31	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-12	30.47	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.4e-04	26.25	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 117..230
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 117..230
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 116..256 e-value: 2.11977E-45 score: 147.615
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 43..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G41680.1	CSPI03G41680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding