CSPI03G41580 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G41580
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L28, putative
Location	Chr3: 35703983 .. 35705909 (-)
RNA-Seq Expression	CSPI03G41580
Synteny	CSPI03G41580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGAATTAGGGTTTAGTATAAAGAGTGGAAACTCCCACTTCATTTTGCTGCACGCCCCATTTTACCTATCGGAGCATTGGTCAGGCAAAACCCTAACGCAAATCAGGTTTTTCGATTTCTCTCAACGATTACGTTTGTTTCTTTGAAATTGTTTGTGTTTCCGATGTAATACTATGCGTATGTATGATTTTACTCAAGCTAGACTCTCTTCTGAGATCTCTTTTTTCGTCTATTTGTATCGTTGTTGCAGTGCCAGAAGAAGACGATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTAGTCATCTTAAATATTCTGATTAACGAGGCGTTCTTTTCATTTTAATTGCAATGCTAGTGGATTAAGTTTGGAAGATTTCGTTTGAACGTCTATACAACTTAGAGACGGGATCGTTAGTATATTATGTCGTTGTTTGAAGGTTTGTGTATTGTTTAAGTAGAGTGTAGATGAAATTGAAATGTTAGAGTGTTTGTTTGCTTTGATTCTATGAAGTTTTTCAAATGACCAAACCGCTGCTATGTTATTGTTTGAATTCCTGATGTTCTGCTCAAGTGGAGGTTATCTAGATTAGATGTGTGAGGGGCCAGCGAACTGATATATAGTTGTATACGATGTTGTAAATCGTTTGAAACTTCGTTTGTGCAGCATCTGGGAGGGTCGTAGAATAGAGATTGCATGGTCATTGTGCTTGTCCAATTAATGTTTATGCTATCGGTTCTTTTATTCTTAGATTAGATGTGTTCAAGAAATTATTTAGTTATTGGGTTACATGTTCGACAATTGATTCTGCGGTTTTCTTGAATACTTCCACCCGTTGCTAATCTCTTTGTACTAGAAAACATATTTGAGTATTTAATAATTTTTTGTCCTTGTTGAACAGTTCGGTTTATTGTCTAATATCTATTCGAATTTCATTTTTTTAGAACTTTATTAATAGTGGTGAGAGGAGTTTAAGGGGATTTTTTCTTTTCTTCATTATTTTTATTGTATGTTTTGGATTGAAGATAATATTGCCAATAGTCGGTGCAGTTTATGCTTAGGGTTCATCAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTATAAACAGCAGACCTTAATTATCTGTTGAGTATGACTTGTTCCTAATTAATACCATGGAAATAGTTGCATTAACTCACTCACCACACGAATGATATCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTCAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGAGATTTAGGAGAATGATAAATGAGATTTTGCGTTTGCCATTGTGTTTTATGTTGGGATGTCAACCTTTTTAGTTCAGTTTGGAATCTGAAGAATAGTCTTGCTATAGATGTTTTTTTTTTGCTGTGTTTTGCATTATTATTATATGATTGTTTTCTTGATGTGAAGAACTTTTGGAAGGCAATCTTATGACTTTGTTTTGGTATTGTGTTATTTTAGTTTGTAGTTGAAAATTACTAAGATATTTCATGATGCTTTGCGAAGGCTACTTAATCTAGAAAATGAATAATAGCAACCTTTTGGTGATTTATGTTAGATCTTCCC

mRNA sequence

GATGGAATTAGGGTTTAGTATAAAGAGTGGAAACTCCCACTTCATTTTGCTGCACGCCCCATTTTACCTATCGGAGCATTGGTCAGGCAAAACCCTAACGCAAATCAGTGCCAGAAGAAGACGATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTCAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGAGATTTAGGAGAATGATAAATGAGATTTTGCGTTTGCCATTGTGTTTTATGTTGGGATGTCAACCTTTTTAGTTCAGTTTGGAATCTGAAGAATAGTCTTGCTATAGATGTTTTTTTTTTGCTGTGTTTTGCATTATTATTATATGATTGTTTTCTTGATGTGAAGAACTTTTGGAAGGCAATCTTATGACTTTGTTTTGGTATTGTGTTATTTTAGTTTGTAGTTGAAAATTACTAAGATATTTCATGATGCTTTGCGAAGGCTACTTAATCTAGAAAATGAATAATAGCAACCTTTTGGTGATTTATGTTAGATCTTCCC

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTCAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGA

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSKK*

Homology

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BLAST of CSPI03G41580 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.6e-55
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE+NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP  S++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CSPI03G41580 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.0e-54
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CSPI03G41580 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKE NN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
             +   K+K  NKP+ +  +   K   RR    V   +  N+YR DL KA L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of CSPI03G41580 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++S  ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVM--VKRKRTRPTKS 136

[Close]

BLAST of CSPI03G41580 vs. ExPASy Swiss-Prot
Match: P41105 (60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++S  ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVV--VKRKRTRPTKS 136

[Close]

BLAST of CSPI03G41580 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of CSPI03G41580 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of CSPI03G41580 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of CSPI03G41580 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.5e-68
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 147

[Close]

BLAST of CSPI03G41580 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.5e-68
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 147

[Close]

BLAST of CSPI03G41580 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of CSPI03G41580 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 4.9e-70
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 149
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of CSPI03G41580 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of CSPI03G41580 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSK 148
           RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 147

[Close]

BLAST of CSPI03G41580 vs. NCBI nr
Match: KAG6606729.1 (hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1    MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
            MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1464 MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 1523

Query: 61   PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
            PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 1524 PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 1583

Query: 121  RLSAVNRSLKVAKSGVKKRNRQALKSK 148
            RLSAVNRSLKVAKSGVKKRNRQALKS+
Sbjct: 1584 RLSAVNRSLKVAKSGVKKRNRQALKSR 1610

[Close]

BLAST of CSPI03G41580 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE+NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP  S++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CSPI03G41580 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE+NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP  S++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CSPI03G41580 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CSPI03G41580 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CSPI03G41580 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of CSPI03G41580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	1.6e-55	76.22	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	3.0e-54	75.52	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q962T2	1.3e-12	37.80	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
P46779	1.8e-11	31.65	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]
P41105	2.4e-11	31.65	60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2	[more]

BLAST of CSPI03G41580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIG3	1.3e-71	100.00	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]
A0A1S3BIE3	2.4e-70	98.65	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	2.4e-70	98.65	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1K7P5	6.5e-68	95.24	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A6J1GC99	6.5e-68	95.24	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 P...	[more]

BLAST of CSPI03G41580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146830.1	2.6e-71	100.00	60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein C...	[more]
XP_008447584.1	4.9e-70	98.65	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_038886678.1	1.9e-69	98.63	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_022949503.1	1.3e-67	95.24	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
KAG6606729.1	1.3e-67	95.24	hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G41580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	1.1e-56	76.22	Ribosomal L28e protein family	[more]
AT4G29410.2	1.1e-56	76.22	Ribosomal L28e protein family	[more]
AT2G19730.1	2.1e-55	75.52	Ribosomal L28e protein family	[more]
AT2G19730.2	2.1e-55	75.52	Ribosomal L28e protein family	[more]
AT2G19730.3	2.1e-55	75.52	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 4.0E-44 score: 152.1
None	No IPR available	PANTHER	PTHR10544:SF20	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..148
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 4.5E-35 score: 120.8
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G41580.1	CSPI03G41580.1	mRNA
CSPI03G41580.2	CSPI03G41580.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome