CSPI03G40710 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G40710
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CDT1-like protein a
Location	Chr3: 34859931 .. 34861760 (+)
RNA-Seq Expression	CSPI03G40710
Synteny	CSPI03G40710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCTACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTTGAGCTCCAAGACGCCGAAGAAGCCGGCGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTAAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATCTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGATCGAATGAAAGTCAATCTAGTAGCTCCAATACTACTTGTGTTGATAATAAGTTCTCCAATAAATTGCCTGAGAAGTAAGTCGTTTTGTTTATCTTGATCTTGATGTTTTGCTTATTAATTGATGGTTGGCTGGTTGTTTAGATCTACTTTGAGTGTTTGGTGAATGAGTTTTCTTACTTTGGTGTGTTTTGCAGATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCAACGTTTGCTCTAAGATTGAAGTCCTCACTGATAGGTACTTTACTTATTCTGCCTTCTCCATCGCCTTTCCTCTCCATCCATTTCTGTGCTGATACTGTTCGTAGTAATTTTCCAATAATCTATCTGCCTGGATGACTAAGTAAATTGAAGAAGTTTGTGAATTTTGTTATTGTTGGCTTGTAAAAGAAATAAAGAATACTGCTTTTGTAATGACAGACAATTAAGAACAAGAAAGAATGTGGATCTTGGTCTGCATATATGATTTTTTTATTTATTTTGCGAATTGAAATTGTATTTGTTTGGGTATAGGAAGTTGAGCCTCTTAAGATTTACAATTTTGTGTTGACAAGTTTTAATCCTTCTAGTTTTACTTCATTTTGTGGCACATACATCTTAGACTTCTTATATGACTCAAAGAAGAGTATCTCAAGACGTTATACTGTGTTTTTTTATTATAAATTTGATGGTTATGATTGCAGGAGGTTTTCATACAGTCATTTGGCTCAACTGAAGTTTATTTTACCTGAAGCAATTGTGGTTAAGAAAGTTGCGGTCTTTGATGAGTGTACCAACTGGAAGAAGCCAGAACTTCATATATCTTTCAATTTTGGTGTCCTCGCTGTAGACAGTAAGGAAAACCATTATACGCAATTGAGGAAGTTGTTTAGGATACAGCTTTCAGAATTTGTGAGTTCCCATCCATAAGTTATGCCACCATTTTTCTTCTATGATTTGAAAATGTATTTATTTGTATATGTGTTTACAAATCCTAGAATATGTTGGTTCTCTTCATAGACATTGGCATGAAATGTGAAAATTTATGTGCCCTCTATAGTCATTCTAGTTCTCGCTCTATTTTCAACTCGACATGAAGATTTAAAACAAACTACGTTGAAGTTACTTTTTTTCAAATTTTATAGTCAGAATTGGGAATACATTTGGTGGTATAACAATGAATTGTAGCATTCTGATCATAGAAGTTGTTATCATTAGCATCATGGCCACTTGAGATGGCTTGACTTTTCTCTTTCGTTGACATGCTTTTCTGTATTCAGATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCATGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAA

mRNA sequence

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCTACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTTGAGCTCCAAGACGCCGAAGAAGCCGGCGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTAAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATCTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGATCGAATGAAAGTCAATCTAGTAGCTCCAATACTACTTGTGTTGATAATAAGTTCTCCAATAAATTGCCTGAGAAATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCAACGTTTGCTCTAAGATTGAAGTCCTCACTGATAGGAGGTTTTCATACAGTCATTTGGCTCAACTGAAGTTTATTTTACCTGAAGCAATTGTGGTTAAGAAAGTTGCGGTCTTTGATGAGTGTACCAACTGGAAGAAGCCAGAACTTCATATATCTTTCAATTTTGGTGTCCTCGCTGTAGACAGTAAGGAAAACCATTATACGCAATTGAGGAAGTTGTTTAGGATACAGCTTTCAGAATTTATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCATGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAA

Coding sequence (CDS)

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCTACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTTGAGCTCCAAGACGCCGAAGAAGCCGGCGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTAAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATCTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGATCGAATGAAAGTCAATCTAGTAGCTCCAATACTACTTGTGTTGATAATAAGTTCTCCAATAAATTGCCTGAGAAATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCAACGTTTGCTCTAAGATTGAAGTCCTCACTGATAGGAGGTTTTCATACAGTCATTTGGCTCAACTGAAGTTTATTTTACCTGAAGCAATTGTGGTTAAGAAAGTTGCGGTCTTTGATGAGTGTACCAACTGGAAGAAGCCAGAACTTCATATATCTTTCAATTTTGGTGTCCTCGCTGTAGACAGTAAGGAAAACCATTATACGCAATTGAGGAAGTTGTTTAGGATACAGCTTTCAGAATTTATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCATGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAA

Protein sequence

MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIKEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMIKSTMTGHGPNK

Homology

[Close]

BLAST of CSPI03G40710 vs. ExPASy Swiss-Prot
Match: Q9SJW9 (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.4e-28
Identity = 107/293 (36.52%), Postives = 160/293 (54.61%), Query Frame = 0


Query: 8   ISSPSS--TLPFKSNKNV-----SSNSTSLLKDPQSLSSKTPKKPAERTRKR---KKVAL 67
           +S+P S  ++PFKS K +     SS S +   +P S++  TP+KP E    R   + VAL
Sbjct: 1   MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60

Query: 68  SIKEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNK 127
           S+KE+ +AA S   S       D     +K       S S+ S+  SSN     N    K
Sbjct: 61  SVKEIRQAAGSRRRS------EDPVASSAKSRLFFDSSSSSPSKRKSSN----KNAEKEK 120

Query: 128 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPE 187
           LPEK+E L KFF+ L+ +M L + +G    FSN+  +IE LT+RRF YSHLAQ+K ILPE
Sbjct: 121 LPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPE 180

Query: 188 AIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSK---ENHYTQLRKLFRIQLSEFI--- 247
           AI +K+V + DE T   KP+LH++ N   +  + K   E+    LRK+FR +L++F+   
Sbjct: 181 AIEIKRVLIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAH 240

Query: 248 ---DDVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISS 276
              D+VP       FN R + + +    +  V + +E++A    +P++K  SS
Sbjct: 241 PQGDEVPEEPLPEPFN-RRKPVENSNVEVKRVSSLMEEMA---SIPASKLFSS 279

[Close]

BLAST of CSPI03G40710 vs. ExPASy Swiss-Prot
Match: Q9M1S9 (CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-22
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 117 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 176
           KLPE+FE+L +FF+ L+ A+RLL+ KG ++ ++N+C KIE LT+R FSY HLAQ+K I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 177 EAIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSK--ENHYTQLRKLFRIQLSEF 231
           EAI +K+V  F E T   KP LHI  N   + V+       Y +LRK+F  +L +F
Sbjct: 105 EAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDF 160

[Close]

BLAST of CSPI03G40710 vs. ExPASy TrEMBL
Match: A0A0A0L7I7 (CDT1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.1e-106
Identity = 231/311 (74.28%), Postives = 258/311 (82.96%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQSLSS+TP+KP ER RKR KVALSIK
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EV++AAQSVHESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRSK-TCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDRRFSYSHLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDV 240
           +KKV VF   T+  KP+LHISFNFGVL  +SKE+ Y QLRKLFR +LSEF      IDD+
Sbjct: 181 LKKVVVFYGLTSCMKPDLHISFNFGVL--ESKEDQYMQLRKLFRTRLSEFVSSHPEIDDI 240

Query: 241 P------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMI 300
           P       FNFR+ +L  +T +LS VKTSIEQLAP QP+PSA+ I SNH+SE N GF +I
Sbjct: 241 PKDSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRII 300

[Close]

BLAST of CSPI03G40710 vs. ExPASy TrEMBL
Match: A0A5A7T8X4 (CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00930 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.7e-105
Identity = 231/311 (74.28%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQSLSSKTP+KPAERTRKR KVALSIK
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EV+RAAQSV+ESN Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRSK-TCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFSNVC+KIEVLTDRRFSY+HLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDV 240
           +KKV VFDE T+  KP+LHISFNF +L  +SKE+ Y QLRKLFR +LSEF      IDDV
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDIL--ESKEDQYMQLRKLFRTRLSEFASSHPEIDDV 240

Query: 241 P------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMI 300
           P       FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EEN GF +I
Sbjct: 241 PKDLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRII 300

[Close]

BLAST of CSPI03G40710 vs. ExPASy TrEMBL
Match: A0A1S3BGW9 (CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.7e-105
Identity = 231/311 (74.28%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQSLSSKTP+KPAERTRKR KVALSIK
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EV+RAAQSV+ESN Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRSK-TCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFSNVC+KIEVLTDRRFSY+HLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDV 240
           +KKV VFDE T+  KP+LHISFNF +L  +SKE+ Y QLRKLFR +LSEF      IDDV
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDIL--ESKEDQYMQLRKLFRTRLSEFASSHPEIDDV 240

Query: 241 P------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMI 300
           P       FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EEN GF +I
Sbjct: 241 PKDLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRII 300

[Close]

BLAST of CSPI03G40710 vs. ExPASy TrEMBL
Match: A0A5D3BZJ0 (CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00950 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.6e-86
Identity = 205/314 (65.29%), Postives = 238/314 (75.80%), Query Frame = 0


Query: 1   MAGASNKI-SSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAE-RTRKR-KKVAL 60
           MA AS KI SS SSTLPFK  K + SN  SLL+D QSLSSKTP+KPAE  TR R +KVAL
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIKEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNK 120
           SIKEV++AA+SV ESN Q LP DL TE  K VRR++DS SNESQS       V+NK S K
Sbjct: 61  SIKEVKQAAKSVRESNRQ-LPLDLATEERKSVRRQIDSWSNESQS-------VENK-SRK 120

Query: 121 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPE 180
           LPEKFE+LCKFF  L+ AMRLLRCKGVASNFSNVC K+E LTDRRFSY HLAQ KFILPE
Sbjct: 121 LPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILPE 180

Query: 181 AIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFID----- 240
           AIV+KKV V+DE T   KP+LHISFNF VL  ++KE+ Y QLRKLFR +LSEF+      
Sbjct: 181 AIVLKKVVVYDEQTCCMKPDLHISFNFAVL--ENKEDQYMQLRKLFRARLSEFVSSYPET 240

Query: 241 -DVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGF 300
            DVP       FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEEN GF
Sbjct: 241 HDVPKDLLPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGF 300

[Close]

BLAST of CSPI03G40710 vs. ExPASy TrEMBL
Match: A0A1S3CEP6 (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.6e-86
Identity = 205/314 (65.29%), Postives = 238/314 (75.80%), Query Frame = 0


Query: 1   MAGASNKI-SSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAE-RTRKR-KKVAL 60
           MA AS KI SS SSTLPFK  K + SN  SLL+D QSLSSKTP+KPAE  TR R +KVAL
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIKEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNK 120
           SIKEV++AA+SV ESN Q LP DL TE  K VRR++DS SNESQS       V+NK S K
Sbjct: 61  SIKEVKQAAKSVRESNRQ-LPLDLATEERKSVRRQIDSWSNESQS-------VENK-SRK 120

Query: 121 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPE 180
           LPEKFE+LCKFF  L+ AMRLLRCKGVASNFSNVC K+E LTDRRFSY HLAQ KFILPE
Sbjct: 121 LPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILPE 180

Query: 181 AIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFID----- 240
           AIV+KKV V+DE T   KP+LHISFNF VL  ++KE+ Y QLRKLFR +LSEF+      
Sbjct: 181 AIVLKKVVVYDEQTCCMKPDLHISFNFAVL--ENKEDQYMQLRKLFRARLSEFVSSYPET 240

Query: 241 -DVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGF 300
            DVP       FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEEN GF
Sbjct: 241 HDVPKDLLPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGF 300

[Close]

BLAST of CSPI03G40710 vs. NCBI nr
Match: XP_031739146.1 (CDT1-like protein a, chloroplastic [Cucumis sativus])

HSP 1 Score: 560.5 bits (1443), Expect = 9.0e-156
Identity = 291/299 (97.32%), Postives = 298/299 (99.67%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTP+KPAERTRKRKKVALSI+
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSS++TCVDNK+SNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCLNFAMRLLRCKGVASNFS+VCSKIEVLTDRRFSYSHLAQLKFILPEAIV
Sbjct: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFR 240
           VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFR
Sbjct: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFR 240

Query: 241 TQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMIKSTMTGHGPNK 300
           TQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEEN GFP+IKSTMTGHGPNK
Sbjct: 241 TQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPIIKSTMTGHGPNK 299

[Close]

BLAST of CSPI03G40710 vs. NCBI nr
Match: XP_004151978.3 (CDT1-like protein a, chloroplastic [Cucumis sativus] >KAE8650673.1 hypothetical protein Csa_009499 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 5.4e-108
Identity = 233/311 (74.92%), Postives = 260/311 (83.60%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQSLSS+TP+KP ER RKR KVALSIK
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EV++AAQSVHESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRSK-TCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDRRFSYSHLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDV 240
           +KKV VFDE T+  KP+LHISFNFGVL  +SKE+ Y QLRKLFR +LSEF      IDD+
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFGVL--ESKEDQYMQLRKLFRTRLSEFVSSHPEIDDI 240

Query: 241 P------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMI 300
           P       FNFR+ +L  +T +LS VKTSIEQLAP QP+PSA+ I SNH+SE N GF +I
Sbjct: 241 PKDSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRII 300

[Close]

BLAST of CSPI03G40710 vs. NCBI nr
Match: XP_031737520.1 (CDT1-like protein a, chloroplastic [Cucumis sativus] >KGN57983.2 hypothetical protein Csa_010006 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 7.7e-107
Identity = 231/311 (74.28%), Postives = 258/311 (82.96%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQSLSS+TP+KP ER RKR KVALSIK
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EV++AAQSVHESN Q L HDLTT GSK+VRR+MDS S ESQSS S  TCVDNK SNK PE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSTESQSSRSK-TCVDNK-SNKFPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDRRFSYSHLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDV 240
           +KKV VFDE T+  KP+LHISFNFGVL  +SKE+ Y QLRKLFR +LSEF      IDD+
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFGVL--ESKEDQYMQLRKLFRTRLSEFVSSHPEIDDI 240

Query: 241 P------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMI 300
           P       FNFR+ +L  +T +LS VKTSIEQLAP QP+PSA+ I SNH+SE N GF +I
Sbjct: 241 PKDSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRII 300

[Close]

BLAST of CSPI03G40710 vs. NCBI nr
Match: XP_008447443.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo] >KAA0038091.1 CDT1-like protein a [Cucumis melo var. makuwa] >TYK20516.1 CDT1-like protein a [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 5.5e-105
Identity = 231/311 (74.28%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAERTRKRKKVALSIK 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQSLSSKTP+KPAERTRKR KVALSIK
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNKLPE 120
           EV+RAAQSV+ESN Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRSK-TCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFSNVC+KIEVLTDRRFSY+HLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 181 VKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDV 240
           +KKV VFDE T+  KP+LHISFNF +L  +SKE+ Y QLRKLFR +LSEF      IDDV
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDIL--ESKEDQYMQLRKLFRTRLSEFASSHPEIDDV 240

Query: 241 P------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGFPMI 300
           P       FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EEN GF +I
Sbjct: 241 PKDLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRII 300

[Close]

BLAST of CSPI03G40710 vs. NCBI nr
Match: KAA0051017.1 (CDT1-like protein b [Cucumis melo var. makuwa] >TYK04404.1 CDT1-like protein b [Cucumis melo var. makuwa])

HSP 1 Score: 329.3 bits (843), Expect = 3.4e-86
Identity = 205/314 (65.29%), Postives = 238/314 (75.80%), Query Frame = 0


Query: 1   MAGASNKI-SSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPKKPAE-RTRKR-KKVAL 60
           MA AS KI SS SSTLPFK  K + SN  SLL+D QSLSSKTP+KPAE  TR R +KVAL
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIKEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNK 120
           SIKEV++AA+SV ESN Q LP DL TE  K VRR++DS SNESQS       V+NK S K
Sbjct: 61  SIKEVKQAAKSVRESNRQ-LPLDLATEERKSVRRQIDSWSNESQS-------VENK-SRK 120

Query: 121 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPE 180
           LPEKFE+LCKFF  L+ AMRLLRCKGVASNFSNVC K+E LTDRRFSY HLAQ KFILPE
Sbjct: 121 LPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILPE 180

Query: 181 AIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFID----- 240
           AIV+KKV V+DE T   KP+LHISFNF VL  ++KE+ Y QLRKLFR +LSEF+      
Sbjct: 181 AIVLKKVVVYDEQTCCMKPDLHISFNFAVL--ENKEDQYMQLRKLFRARLSEFVSSYPET 240

Query: 241 -DVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENHGF 300
            DVP       FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEEN GF
Sbjct: 241 HDVPKDLLPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGF 300

[Close]

BLAST of CSPI03G40710 vs. TAIR 10
Match: AT2G31270.1 (homolog of yeast CDT1 A )

HSP 1 Score: 126.7 bits (317), Expect = 3.1e-29
Identity = 107/293 (36.52%), Postives = 160/293 (54.61%), Query Frame = 0


Query: 8   ISSPSS--TLPFKSNKNV-----SSNSTSLLKDPQSLSSKTPKKPAERTRKR---KKVAL 67
           +S+P S  ++PFKS K +     SS S +   +P S++  TP+KP E    R   + VAL
Sbjct: 1   MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60

Query: 68  SIKEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNTTCVDNKFSNK 127
           S+KE+ +AA S   S       D     +K       S S+ S+  SSN     N    K
Sbjct: 61  SVKEIRQAAGSRRRS------EDPVASSAKSRLFFDSSSSSPSKRKSSN----KNAEKEK 120

Query: 128 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPE 187
           LPEK+E L KFF+ L+ +M L + +G    FSN+  +IE LT+RRF YSHLAQ+K ILPE
Sbjct: 121 LPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPE 180

Query: 188 AIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSK---ENHYTQLRKLFRIQLSEFI--- 247
           AI +K+V + DE T   KP+LH++ N   +  + K   E+    LRK+FR +L++F+   
Sbjct: 181 AIEIKRVLIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAH 240

Query: 248 ---DDVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISS 276
              D+VP       FN R + + +    +  V + +E++A    +P++K  SS
Sbjct: 241 PQGDEVPEEPLPEPFN-RRKPVENSNVEVKRVSSLMEEMA---SIPASKLFSS 279

[Close]

BLAST of CSPI03G40710 vs. TAIR 10
Match: AT3G54710.1 (homolog of yeast CDT1 B homolog of yeast CDT1 B )

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-23
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 117 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 176
           KLPE+FE+L +FF+ L+ A+RLL+ KG ++ ++N+C KIE LT+R FSY HLAQ+K I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 177 EAIVVKKVAVFDECTNWKKPELHISFNFGVLAVDSK--ENHYTQLRKLFRIQLSEF 231
           EAI +K+V  F E T   KP LHI  N   + V+       Y +LRK+F  +L +F
Sbjct: 105 EAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDF 160

The following BLAST results are available for this feature:

BLAST of CSPI03G40710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJW9	4.4e-28	36.52	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1...	[more]
Q9M1S9	2.1e-22	48.28	CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1	[more]

BLAST of CSPI03G40710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7I7	1.1e-106	74.28	CDT1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=3 S...	[more]
A0A5A7T8X4	2.7e-105	74.28	CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G...	[more]
A0A1S3BGW9	2.7e-105	74.28	CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=3 ...	[more]
A0A5D3BZJ0	1.6e-86	65.29	CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G...	[more]
A0A1S3CEP6	1.6e-86	65.29	CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=3 SV=1	[more]

BLAST of CSPI03G40710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739146.1	9.0e-156	97.32	CDT1-like protein a, chloroplastic [Cucumis sativus]	[more]
XP_004151978.3	5.4e-108	74.92	CDT1-like protein a, chloroplastic [Cucumis sativus] >KAE8650673.1 hypothetical ...	[more]
XP_031737520.1	7.7e-107	74.28	CDT1-like protein a, chloroplastic [Cucumis sativus] >KGN57983.2 hypothetical pr...	[more]
XP_008447443.1	5.5e-105	74.28	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo] >KAA0038091.1 CDT1-...	[more]
KAA0051017.1	3.4e-86	65.29	CDT1-like protein b [Cucumis melo var. makuwa] >TYK04404.1 CDT1-like protein b [...	[more]

BLAST of CSPI03G40710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31270.1	3.1e-29	36.52	homolog of yeast CDT1 A	[more]
AT3G54710.1	1.5e-23	48.28	homolog of yeast CDT1 B homolog of yeast CDT1 B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014939	CDT1 Geminin-binding domain-like	SMART	SM01075	CDT1_2	coord: 118..246 e-value: 1.9E-10 score: 50.7
IPR014939	CDT1 Geminin-binding domain-like	PFAM	PF08839	CDT1	coord: 118..201 e-value: 1.7E-12 score: 48.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..299
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR28637	DNA REPLICATION FACTOR CDT1	coord: 24..236
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 113..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G40710.1	CSPI03G40710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0071163	DNA replication preinitiation complex assembly
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0070182	DNA polymerase binding