CSPI03G37920 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G37920
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 32840204 .. 32840422 (+)
RNA-Seq Expression	CSPI03G37920
Synteny	CSPI03G37920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAAAGATTAGGAAATCAGGGAAAACCTGCTGGAGAGAGGCTGGGACGACACGAGCAGAGGAAAGACGGCGACGGAAACGGCGGCAGTAGCACTGAACGGGAGAGAGGGGGCGGCGACAATGAGCTGCTGAAAGAGAGGAAGAGACGGAGTGAAGAAGAAGAAGAAGGAGGTGTGGTGGAGCACGTGAGAGTAAAGGACGATGATGAAGGTTAG

mRNA sequence

ATGGACGAAAGATTAGGAAATCAGGGAAAACCTGCTGGAGAGAGGCTGGGACGACACGAGCAGAGGAAAGACGGCGACGGAAACGGCGGCAGTAGCACTGAACGGGAGAGAGGGGGCGGCGACAATGAGCTGCTGAAAGAGAGGAAGAGACGGAGTGAAGAAGAAGAAGAAGGAGGTGTGGTGGAGCACGTGAGAGTAAAGGACGATGATGAAGGTTAG

Coding sequence (CDS)

ATGGACGAAAGATTAGGAAATCAGGGAAAACCTGCTGGAGAGAGGCTGGGACGACACGAGCAGAGGAAAGACGGCGACGGAAACGGCGGCAGTAGCACTGAACGGGAGAGAGGGGGCGGCGACAATGAGCTGCTGAAAGAGAGGAAGAGACGGAGTGAAGAAGAAGAAGAAGGAGGTGTGGTGGAGCACGTGAGAGTAAAGGACGATGATGAAGGTTAG

Protein sequence

MDERLGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHVRVKDDDEG*

Homology

[Close]

BLAST of CSPI03G37920 vs. ExPASy TrEMBL
Match: A0A0A0LBR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821580 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 5   LGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHV 64
           LGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHV
Sbjct: 34  LGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHV 93

Query: 65  RVKDDDEG 73
           RVKDDD G
Sbjct: 94  RVKDDDGG 101

[Close]

BLAST of CSPI03G37920 vs. NCBI nr
Match: KGN59455.1 (hypothetical protein Csa_001719 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 5   LGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHV 64
           LGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHV
Sbjct: 34  LGNQGKPAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVVEHV 93

Query: 65  RVKDDDEG 73
           RVKDDD G
Sbjct: 94  RVKDDDGG 101

The following BLAST results are available for this feature:

BLAST of CSPI03G37920 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G37920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBR5	2.0e-25	98.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821580 PE=4 SV=1	[more]

BLAST of CSPI03G37920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59455.1	4.0e-25	98.53	hypothetical protein Csa_001719 [Cucumis sativus]	[more]

BLAST of CSPI03G37920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G37920.1	CSPI03G37920.1	mRNA