CSPI03G34530 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G34530
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Location	Chr3: 30329520 .. 30330379 (-)
RNA-Seq Expression	CSPI03G34530
Synteny	CSPI03G34530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACATCTTATCTCTACCTTTCTCTCTAGATCTTCTTCTCTACCCATAGTTCTGAGCAATTCTTCATCGTTTCTATTCCTATTTCTGGTGAGTGCAAGTTTGGAATTGGGAGTTGTGTTAACCTTGGGGAGCAACCAACAGTGAGATTAGCACCACGGTCTAGCTGAATTTTGCTTTCAAGGCAATGATTTATCACGACGCAGCAACTGATCTTGATCGTCATCATCAAAATTTTGCAACATTTGAAAGAAAAAAATTACAATGTCGATCAAAAACAAAGTTCTACCCGACCTGTCTAAACTGGAGCCACTCGACGGAGAAAACTACCATCGCTGGTCTCAGAAGTTATTGGTCTTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCGAACCGCCAATCGATCCTCTGGCACCACCAATCGATCCTCCAACATCTTTTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACTGCTGACCAAGCAAAGAAATCATCTCCAATTGATCCCGAGAAGTACAAGAAAGACAATAAGACTGTTCGTGGGCACCTGTTGAACCATATGACGGATGCCGTGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAGGACATCTGGTGCACTCTGGAGTCTCGCTATGGTGGAGACGACGCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTGCAGTTTCAAATGACAGATGATAAGCCAGTTGTGGAACAGATACATGAGTATGAAAACCTTGTGGCCAATGTTCTATCTGAAGGTATGAAGATGTGTGAGATACTTCAAGCTAATGTTTTAGTGGAAAAATTTCCTCCCTATGGAGCGACTACCAAAATCACTTGA

mRNA sequence

AAAACATCTTATCTCTACCTTTCTCTCTAGATCTTCTTCTCTACCCATAGTTCTGAGCAATTCTTCATCGTTTCTATTCCTATTTCTGGTGAGTGCAAGTTTGGAATTGGGAGTTGTGTTAACCTTGGGGAGCAACCAACAGTGAGATTAGCACCACGGTCTAGCTGAATTTTGCTTTCAAGGCAATGATTTATCACGACGCAGCAACTGATCTTGATCGTCATCATCAAAATTTTGCAACATTTGAAAGAAAAAAATTACAATGTCGATCAAAAACAAAGTTCTACCCGACCTGTCTAAACTGGAGCCACTCGACGGAGAAAACTACCATCGCTGGTCTCAGAAGTTATTGGTCTTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCGAACCGCCAATCGATCCTCTGGCACCACCAATCGATCCTCCAACATCTTTTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACTGCTGACCAAGCAAAGAAATCATCTCCAATTGATCCCGAGAAGTACAAGAAAGACAATAAGACTGTTCGTGGGCACCTGTTGAACCATATGACGGATGCCGTGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAGGACATCTGGTGCACTCTGGAGTCTCGCTATGGTGGAGACGACGCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTGCAGTTTCAAATGACAGATGATAAGCCAGTTGTGGAACAGATACATGAGTATGAAAACCTTGTGGCCAATGTTCTATCTGAAGGTATGAAGATGTGTGAGATACTTCAAGCTAATGTTTTAGTGGAAAAATTTCCTCCCTATGGAGCGACTACCAAAATCACTTGA

Coding sequence (CDS)

ATGATTTATCACGACGCAGCAACTGATCTTGATCGTCATCATCAAAATTTTGCAACATTTGAAAGAAAAAAATTACAATGTCGATCAAAAACAAAGTTCTACCCGACCTGTCTAAACTGGAGCCACTCGACGGAGAAAACTACCATCGCTGGTCTCAGAAGTTATTGGTCTTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCGAACCGCCAATCGATCCTCTGGCACCACCAATCGATCCTCCAACATCTTTTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACTGCTGACCAAGCAAAGAAATCATCTCCAATTGATCCCGAGAAGTACAAGAAAGACAATAAGACTGTTCGTGGGCACCTGTTGAACCATATGACGGATGCCGTGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAGGACATCTGGTGCACTCTGGAGTCTCGCTATGGTGGAGACGACGCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTGCAGTTTCAAATGACAGATGATAAGCCAGTTGTGGAACAGATACATGAGTATGAAAACCTTGTGGCCAATGTTCTATCTGAAGGTATGAAGATGTGTGAGATACTTCAAGCTAATGTTTTAGTGGAAAAATTTCCTCCCTATGGAGCGACTACCAAAATCACTTGA

Protein sequence

MIYHDAATDLDRHHQNFATFERKKLQCRSKTKFYPTCLNWSHSTEKTTIAGLRSYWSFFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSLVVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPPYGATTKIT*

Homology

[Close]

BLAST of CSPI03G34530 vs. ExPASy TrEMBL
Match: A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.7e-64
Identity = 130/161 (80.75%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. ExPASy TrEMBL
Match: A0A5D3BZH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001760 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.7e-64
Identity = 130/161 (80.75%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.7e-64
Identity = 130/161 (80.75%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.9e-64
Identity = 129/161 (80.12%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLP--TFDPPTTTSTSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. ExPASy TrEMBL
Match: A0A5A7TG73 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007360 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.9e-64
Identity = 129/161 (80.12%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLP--TFDPPTTTSTSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. NCBI nr
Match: TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.6e-64
Identity = 130/161 (80.75%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. NCBI nr
Match: TYK04957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.6e-64
Identity = 130/161 (80.75%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.6e-64
Identity = 130/161 (80.75%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. NCBI nr
Match: KAA0042223.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 6.1e-64
Identity = 129/161 (80.12%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLP--TFDPPTTTSTSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. NCBI nr
Match: TYK26791.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 6.1e-64
Identity = 129/161 (80.12%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 58  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYK 117
           FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLP--TFDPPTTTSTSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYA 93

Query: 118 KDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMT 177
           KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYGGDDAGRKKYVVGKWLQFQMT
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 178 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
           DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Sbjct: 154 DDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPP 192

[Close]

BLAST of CSPI03G34530 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-12
Identity = 55/222 (24.77%), Postives = 102/222 (45.95%), Query Frame = 0


Query: 15  QNFATFERKKLQCRSKTKFYPTCL-NWSHSTEKTTIAGLR------------SYWS---- 74
           +NFA  E    QC+SK K       + S + +K +  G               YW+    
Sbjct: 152 KNFAAIEDGIKQCQSKLKSEAARNGDTSEAVDKDSSHGFSVIKISRFDGKSYLYWASQME 211

Query: 75  -FFEQLEVDYVLIVE-PPIDPLAPPIDPPTSFDPESSTGSLVVTADQAKKSSPIDPEKYK 134
            F +QL++ YVL    P I     P   P       +TG                 +K+ 
Sbjct: 212 LFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATG-----------------KKWL 271

Query: 135 KDNKTVRGHLLNHMTDAVFDLFVIQ-KSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQM 194
           +D+     HL+N ++D ++  +  + K AK++W  L+  Y  D++  K+  V K+++F+M
Sbjct: 272 RDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRM 331

Query: 195 TDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP 217
            +++P++EQ+  +  +  +++S GM + E    + ++ KFPP
Sbjct: 332 VEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPP 356

The following BLAST results are available for this feature:

BLAST of CSPI03G34530 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G34530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNJ2	1.7e-64	80.75	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZH6	1.7e-64	80.75	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	1.7e-64	80.75	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DSQ3	2.9e-64	80.12	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TG73	2.9e-64	80.12	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI03G34530 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11996.1	3.6e-64	80.75	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04957.1	3.6e-64	80.75	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	3.6e-64	80.75	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042223.1	6.1e-64	80.12	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26791.1	6.1e-64	80.12	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G34530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	3.4e-12	24.77	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 115..216 e-value: 8.2E-11 score: 41.8
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 97..216
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 97..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G34530.1	CSPI03G34530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding