CSPI03G33460 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G33460
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 29539418 .. 29539636 (+)
RNA-Seq ExpressionCSPI03G33460
SyntenyCSPI03G33460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGTTTGAAGGTTAATGTCAAAACCCAATATTGGGTCCCAACAGATGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGAATATGGAGTGCGGTGGATTTGGGAATCCTACATTTTGGGTCTCTTGTTTTAATGGCATTTCAGTTTTGTATTTTATTGAGGATACGGATTATGATGATGTTCTTGTGTAG

mRNA sequence

ATGTGTGGTTTGAAGGTTAATGTCAAAACCCAATATTGGGTCCCAACAGATGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGAATATGGAGTGCGGTGGATTTGGGAATCCTACATTTTGGGTCTCTTGTTTTAATGGCATTTCAGTTTTGTATTTTATTGAGGATACGGATTATGATGATGTTCTTGTGTAG

Coding sequence (CDS)

ATGTGTGGTTTGAAGGTTAATGTCAAAACCCAATATTGGGTCCCAACAGATGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGAATATGGAGTGCGGTGGATTTGGGAATCCTACATTTTGGGTCTCTTGTTTTAATGGCATTTCAGTTTTGTATTTTATTGAGGATACGGATTATGATGATGTTCTTGTGTAG

Protein sequence

MCGLKVNVKTQYWVPTDEEEEEEEEEEEEEEEEEEENMECGGFGNPTFWVSCFNGISVLYFIEDTDYDDVLV*
Homology
[Close]
BLAST of CSPI03G33460 vs. ExPASy TrEMBL
Match: A0A0A0LFZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740830 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.5e-28
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 1  MCGLKVNVKTQYWVPTDEEEEEEEEEEEEEEEEEEENMECGGFGNPTFWVSCFNGISVLY 60
          MCGLKVNVKTQYWVPTD    EEEEEEEEEEEEEEENMECGGFGNPTFWVSCFNGISVLY
Sbjct: 1  MCGLKVNVKTQYWVPTD----EEEEEEEEEEEEEEENMECGGFGNPTFWVSCFNGISVLY 60

Query: 61 FIEDTDYDDVLV 73
          FIEDTDYDDVLV
Sbjct: 61 FIEDTDYDDVLV 68

The following BLAST results are available for this feature:
BLAST of CSPI03G33460 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G33460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFZ55.5e-2894.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740830 PE=4 SV=1[more]
BLAST of CSPI03G33460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI03G33460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G33460.1CSPI03G33460.1mRNA