CSPI03G32270 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G32270
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 28844050 .. 28845384 (-)
RNA-Seq Expression	CSPI03G32270
Synteny	CSPI03G32270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAATCTTATTCAATGCGAGCAATGCATCGAACCGAACGTTAAGGGTGGAGTCGCTCACCGTGACCGCCAGTGGGAAAAAGAGATCCAAAGCAACCGATTTCGGTTGGCACCAAACCCGTAATTGCGGGAAAGTTCAAAAAACAAGTCAAACCTACGATGATCTTGCACTTTACTGGAGACTTCTCCATCTTTCTCTTCGTCCAATTGGTGCTTTTTCCTTTGTAGGCCCAACTCCAAATTATTACAAAACCTTTTCCTAAAAAAATCATAATATTCCCTCCACCGTACACGTCTGATTTGTTCCACGTGCCAACACGTGTGGACTAGTGGTTTAGTACATGTTGACACACACTTTTAAGTTAGGGGTATTTTAGTAAACCCATGTGATTAATGCGGATTGAGTTTTGTTTTAAAATGGACACGTGTATGTTTATCAAGAGAAAACGGAGATTATCGGTCAATTTTCAATGGAACAACCGATTAAGCCGGTTTGATTAGAATCAACGGTCGTGATTGGTCTTCAAAATCGACGACTTTTTGTTTTAGCATCTTTCACAGGTTCAGACGGACCGGACGCCTTTGCTTTATTTATATGAGAAAAAAGTACTTTTTTTTTCTTGTTAAGTCAAATTTAATTTCTATTTTCAAAATTGGATTTGTATATAGTTTTTGATTCGTAATAGTTTCACGTTTGAATGTGATAGGAGTTAGTTATTTAAGTTAAAATGAAAATTTGGATAGATTTATGGTAACTTTGTAATGAATGATTTTGATGTTAGGAAAGAAGATAAAAGATAAAACTTTTATGGTGGAGTTATAAAGTGGTTGATTTATGGTGGTGTTGTAAAGTTAAACCGAGTAGAGTTTTGTACTTAAAAAGGGTGAGTTTTGGTTTGGTGGTGGACTAAGTCTACTAGGATTTGGCTTTAAAAGAAAATAATTATTATAACCTTTTTCTTTTCCTGAAAAACCCCCAGCCGTCACTTCCGTCTCACGATCTCTCTCCCTGATCACTCTCAGGTCTCAGCATCTCTCTCTCTCTCGATCCCATTTCCCTCTCTCTCTTTCGCTCGACTCTCTCACTCCGGCTGCCGCTCCCCCTGCACCGCCGTATCCATTTATATCACGAGAGAACTGCTCTCTCTCTCTCTCTACCTCTCTCGAATTGTGTCTACAGCTCCGCCCTGCGCCGGTCGTACCTCAGGTCGCCGTCTCACCTTCGGTCGCGGCACGAAGCATCATACCTCCACGATTCCATCTGCGGCTCTCACATCCCGATCAGGCGACGGCAAGGCTGCTCCGACGCTCACATACTCGTCCCGGCGAGTGA

mRNA sequence

ATGACTAATCTTATTCAATGCGAGCAATGCATCGAACCGAACGTTAAGGGTGGAGTCGCTCACCGTGACCGCCAGTGGGAAAAAGAGATCCAAAGCAACCGATTTCGGTTGGCACCAAACCCGTCTCAGCATCTCTCTCTCTCTCGATCCCATTTCCCTCTCTCTCTTTCGCTCGACTCTCTCACTCCGGCTGCCGCTCCCCCTGCACCGCCGTATCCATTTATATCACGAGAGAACTGCTCTCTCTCTCTCTCTACCTCTCTCGAATTGTGTCTACAGCTCCGCCCTGCGCCGGTCGTACCTCAGGTCGCCGTCTCACCTTCGGTCGCGGCACGAAGCATCATACCTCCACGATTCCATCTGCGGCTCTCACATCCCGATCAGGCGACGGCAAGGCTGCTCCGACGCTCACATACTCGTCCCGGCGAGTGA

Coding sequence (CDS)

ATGACTAATCTTATTCAATGCGAGCAATGCATCGAACCGAACGTTAAGGGTGGAGTCGCTCACCGTGACCGCCAGTGGGAAAAAGAGATCCAAAGCAACCGATTTCGGTTGGCACCAAACCCGTCTCAGCATCTCTCTCTCTCTCGATCCCATTTCCCTCTCTCTCTTTCGCTCGACTCTCTCACTCCGGCTGCCGCTCCCCCTGCACCGCCGTATCCATTTATATCACGAGAGAACTGCTCTCTCTCTCTCTCTACCTCTCTCGAATTGTGTCTACAGCTCCGCCCTGCGCCGGTCGTACCTCAGGTCGCCGTCTCACCTTCGGTCGCGGCACGAAGCATCATACCTCCACGATTCCATCTGCGGCTCTCACATCCCGATCAGGCGACGGCAAGGCTGCTCCGACGCTCACATACTCGTCCCGGCGAGTGA

Protein sequence

MTNLIQCEQCIEPNVKGGVAHRDRQWEKEIQSNRFRLAPNPSQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVPQVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE*

Homology

[Close]

BLAST of CSPI03G32270 vs. ExPASy TrEMBL
Match: A0A0A0LFK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734190 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.2e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 42  SQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVP 101
           SQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVP
Sbjct: 46  SQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVP 105

Query: 102 QVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE 144
           QVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE
Sbjct: 106 QVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE 147

[Close]

BLAST of CSPI03G32270 vs. NCBI nr
Match: KGN58866.1 (hypothetical protein Csa_001142 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 42  SQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVP 101
           SQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVP
Sbjct: 46  SQHLSLSRSHFPLSLSLDSLTPAAAPPAPPYPFISRENCSLSLSTSLELCLQLRPAPVVP 105

Query: 102 QVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE 144
           QVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE
Sbjct: 106 QVAVSPSVAARSIIPPRFHLRLSHPDQATARLLRRSHTRPGE 147

The following BLAST results are available for this feature:

BLAST of CSPI03G32270 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G32270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFK0	7.2e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734190 PE=4 SV=1	[more]

BLAST of CSPI03G32270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58866.1	1.5e-47	100.00	hypothetical protein Csa_001142 [Cucumis sativus]	[more]

BLAST of CSPI03G32270 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G32270.1	CSPI03G32270.1	mRNA