CSPI03G31110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G31110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Phycobilisome rod-core linker polypeptide CpcG2 like
Location	Chr3: 28250178 .. 28252198 (-)
RNA-Seq Expression	CSPI03G31110
Synteny	CSPI03G31110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGGTAAGGAATGTCAAGGCTTTACTGCGCGTAAGAGGGTTTTTTTTTTTTTTTTTTTTTTATCTTTTGTTTTGATTTGGACGAGGATGAATCAATGATGTATGTATGAATAAGCTTCATTCTCTGGCCGGAGGGATGGATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAAATATTTTTAGATTTTCTTTTATGTTTATCTGCTGCCTTGATGGTTGGGTGTGCAGATGAGGAAATCTTAGAAATTTTGGCTATAGCTTCTTTAATTTTCCTTTTCTTGAATTGGTGTCCCATTTTCTTCGTTTAGCTTTAATAGCTTTAGAGGTTCGTTGATGATTGTGCGTTGCACAGCTTAGAAAATTTGTTAAACGTTTGCTATAAATCCGTTTTCTATTTCTTTTGTGAGGATCGATGGGGCCTGATCTATGTTCGTTGAATCAATGCTACAATTGTAACGCAGTGGTTGAGTTTGAGTAAAACTTTATATTTTGGTATTGTTTTTCATTTGGCGTCATCAGTTCAGTTATTTGTATAAGTTCCATCAGTTGGAATACGATACGAGTCAAGAACGTTAATGACGCCAAGCCATATAAAGGCGAGCGACCCAACTACCAATATCAAACGGAGCACTAATATAGCCGCTTCCCCCCTACGTACTCGTTGTTCTCTCTTAAAGCTCGTATGAAAGAATACGAGGGTACCACTTTCTGTTTAAAATAGAATTTCTATGTGAATAGAGAATGAACCAACTATATTCATGGTTTACTAATATAAAGTAGAACAAAAATGATAAGAAAGATTTTAACTTGGTTTTTTTTTCTTGAAATATTATATAGGTTCATTACCAGGTTGAGTATTAGGTAACGATTTTGTTTTTTTTTAAAGGAAGTTATTTTATTTGAAGCATAAACTATATGCTAATTAGCAGGGGAGGAAATATTTATCCAAGGCATAGAGATAGGTCCAAGCTACCAAAGAACAAAAAAAGAAGTCTAAAAAATCTTGCACCTGATCAAAATTTAGAACCACTAGCACAAAGAAATTCTGTAGAACAGAAGGCAGTGGCCTTTTCAAATGTAGTTAAGTGAGGATATGGAAGAATGGATGCTAGCCTAACTGAAACCATTAGCCACAAGGGGGTTTGTCAGAGAAACAGAACAAAACGAAAATGGTGTTACAAGTGTTTGTATCTGGGAGCGATTTTCTTCTTTATTTTCATTAGTATATTTCTTTGTTCTATATTCAAAATTATGTGTCATGACGCTTCAACTGTTGTTATTTTTGCATATGGAACAGTCACAAATATTGTTCTTTGTTATCTTCCCCAAGATTGTCTCCTATTCCCTTGTTTGAAAAATGGCAAATGTTGACTTTGTATGCTTATAATGATTGTTGAGATGATTGTATCAATTATATTTGTTAGAGTTAAGCTGCCTAGGCATTCTTTTTCCTGCATTTCTGCCATTAAATCAAATATTTTTAAGCTCCGTAACAACTAAAGTCACATTTGTCTGCTTAATACTAATTGTTCATTCTCAAGAATTTATTTCACTCGCATTGTCCTTTTCTGCAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGGTAGAACCTTTAAACTGTTTTTGCTTCATTGATTTCAATTTTACTTGTGGTATTTATTGTTGAGCTGTTTAACTTATGCTAGTAAGAGTGGAATTGTTTTGCAGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATGTGAGATGCTTCTTTCAACTTGGATCTTTTTATTTTGAACAGCTTAGACGTAACCTTGTGCCTTGTATTAATCTTATGCCTTCGTCTTGCAGTCTTTCAAGAACCATTAACGTGGAGTGGAACGTTTTACTGCAACATGATGTATAA

mRNA sequence

ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATGTGAGATGCTTCTTTCAACTTGGATCTTTTTATTTTGAACAGCTTAGACGTAACCTTGTGCCTTGTATTAATCTTATGCCTTCGTCTTGCAGTCTTTCAAGAACCATTAACGTGGAGTGGAACGTTTTACTGCAACATGATGTATAA

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATGTGAGATGCTTCTTTCAACTTGGATCTTTTTATTTTGAACAGCTTAGACGTAACCTTGTGCCTTGTATTAATCTTATGCCTTCGTCTTGCAGTCTTTCAAGAACCATTAACGTGGAGTGGAACGTTTTACTGCAACATGATGTATAA

Protein sequence

MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDVRCFFQLGSFYFEQLRRNLVPCINLMPSSCSLSRTINVEWNVLLQHDV*

Homology

[Close]

BLAST of CSPI03G31110 vs. ExPASy TrEMBL
Match: A0A0A0L9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
          FSKNFD
Sbjct: 61 FSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. ExPASy TrEMBL
Match: A0A1S3B691 (uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.9e-25
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
          FSKNFD
Sbjct: 61 FSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.9e-24
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
           SKNFD
Sbjct: 61 LSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 FSKNFD 67
           SKNFD
Sbjct: 61 LSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 FSKNFD 67
           SKNF+
Sbjct: 61 LSKNFE 66

[Close]

BLAST of CSPI03G31110 vs. NCBI nr
Match: XP_004137707.1 (uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical protein Csa_001726 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
          FSKNFD
Sbjct: 61 FSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. NCBI nr
Match: XP_008442394.1 (PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
          FSKNFD
Sbjct: 61 FSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
           SKNFD
Sbjct: 61 LSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-23
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 FSKNFD 67
           SKNFD
Sbjct: 61 LSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-23
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIE+ISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFD 67
           SKNFD
Sbjct: 61 LSKNFD 66

[Close]

BLAST of CSPI03G31110 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 7.5e-16
Identity = 37/64 (57.81%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 3  GGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFS 62
          GGNF+ RV SY+ NE +VN LANS +FQRFAVRTSK+IE++S  AA+ ++++A+Q+++F+
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFD 67
          KN D
Sbjct: 64 KNID 67

The following BLAST results are available for this feature:

BLAST of CSPI03G31110 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G31110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U5	6.2e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1	[more]
A0A1S3B691	8.9e-25	95.45	uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=...	[more]
A0A6J1F5E7	9.9e-24	93.94	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A6J1IZW4	2.9e-23	92.42	uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182...	[more]
A0A6J1I5H8	1.4e-22	90.91	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]

BLAST of CSPI03G31110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137707.1	1.3e-25	100.00	uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical ...	[more]
XP_008442394.1	1.8e-24	95.45	PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo]	[more]
XP_022935686.1	2.0e-23	93.94	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022983627.1	5.9e-23	92.42	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]
XP_038903248.1	5.9e-23	92.42	uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara...	[more]

BLAST of CSPI03G31110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	7.5e-16	57.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..64
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G31110.1	CSPI03G31110.1	mRNA