CSPI03G30920 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G30920
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Sel1-like protein
Location	Chr3: 28150711 .. 28153895 (-)
RNA-Seq Expression	CSPI03G30920
Synteny	CSPI03G30920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGGTTTCTTATTCTTTATTTTATAAAAAAAAACCCAGCAAGAGGACAACGATTTTCGTACCAGGAAGAAGGAAGGTAAGAAAAACTTCTTCCGTTCTCAATTTCTTATACTAATCCCTTCATACACGACTTCACTTCTCTCAATTTCTTCTCCCTTTTTTTATGAGATTCATTTCCCTTCTTTTAAGTTTTAACCAAATATAGCGTTTCCGGCGCTTCAGAATCTCCCCATATCATAAGGTCAAGGTTTCGGTTCCAGTAATCGAAGCCGTTCAAGTTGTAATACATGGAGATTAGCGGAGCAACAGAGGCCTTGAATCGCGTTCCTTTATCAGAGGTTGTTTCTGATTGCGTCAAAAGATGGTTCAAGGACACTTTGAAGGAAGCCAAAGCTGGCGATATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCTCGAGATGCTCAGAAGGTCAATTTCTTCCCCCATCAATTTATTTAGATCCCATTGCTTTATCAATTCCTCCAAAAATCATGCCTAATTTACTTCACTTCTCGAAAATCTTCCGCTTATGTAGATGTTTTTGGGTATTATTGGTCAACCGTGTGTATCGTATGTACTGTAAAAGTCTGTTATGTTTCGGCTAAAAATAGTTCTCAGTTTTCTCCGTGGTTTTTGGTTCTTTATAATTTCTAGATTTTTTTTTTTGTGAATTTGAGGATGTCTTAAGATCATCAATTGTTCGAGAGTTGGGTTAATGGATTTTTTATAGTTTGTTTACTATTGATTTTAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTGATTGTTACAATATAAATCTCTTATTTGTTAATGTCTTTTCCTTATCTTATCCATCCTCCTTGAACATCTCTTGCTAATTTCATAAGCTCACATTGATTACAATAGGCTATAATGCCAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTTAACTACTCCAGTGTTGCTGATTTCTCTATGTCATGTCAAAACAACCACTGGTATCTCCTCCACAACATGTCTTTTTAGCAATTTAACTTGTTATTCTTTGTCTTTATGTGTGGCATCAATTATTCTTTCTTGCACACGTGAAAATGCACTAGTAAAAATGATAAAGTTGGCAATATATGACATTTTTGCTCACTGAACAAGTGCTTCGGGATTCAGCTCGAGTGATTAAAGTTTTACAACTATGCTACTATGTGTTTGTGTCATATATAAACACTCGGTGCTTCCTTCTAAACCCTTGGACGCGCCAATCATAATGTTTAGCTTTTTTTCCCTAGATTAGTTATTGTTCTAACCTCCTTGGATGATTTTGGGTGAGGGGATCTTAGATGATTATGCGAATATTAAGTTCATCAAAGTTAATAGTTGTAGGTCATAAACTCTGGCAGCAAAGGATCTTCTACCCTATAGCCTTAGAGGTTATGAGTGCTTTTCAAGATGCTAAACATCCTTTGGGCAATGATGTTATACCATTTGTGCTGAGGATCCTAAAGGATGAATAGGATACACGAATCATAATTTTTAGCTTTGCTTCCCTATATCCAGTTATTGTTCCAACCTCCTTGGGTGATGTTGAGGGAGGGTATCTTAGATGATCATGAATATTAAGTTCATTGAAGTTGATAATTGTTGGTCATAAACTCTGACGACAAAAGGATCTTCTATCTTAGAGCCTTAGAGGTTACGTGTCAGTTGTTTATTGTTCAAGATGCTAAACATCCTTTGGGCATTGATCATGTTATGCAATTTGTGCCGAAGATCCTAAAGGATGTGGATAGGGCACACCAATCTTAACTTTTAGCTTTTCTTTCCTATATCCTGTTATTATTCCGACCTCCTTGGATGATTTTGGGGAGGGATCTTAGATGATTATGAAGATTAAGTTCATTGGAGTTAATTGTTGTAGGTCACAAACTCCGATGACAAAAGGATCTTCTACCTTATTACGTGTCACTTCTTTGTTGTTCAATATGCTAAATATCCTTTGGGTGTTGATCATGTTATGCAATTTGTGCTGACGATCCTAAAGAATGGTTGTTTTATTCTCTAAATACGTTTTCATGTCTTTTTACCAATCCATCTGCTGTTCCTAAGACAACTTAGCCGCATGGTGAAAACATTGCTATGATTTAATATGTTGCAGACCTTCAAATTCACTTATTACAGATGGTAATTTTCTCTTCATATGAATGTGCAATTAGTTGAAATTGTGCTATGGTTGATTCGAAGGATTATAATGTTCACACGATATAAGGATTTCGATATTGCATGGTGGATATTGGAATCAGTTGACTTTAATAATTATGTCTACTCATATTAAGTTATAGATCTTAGGTATTTGTTTCTATACTTCGGCTGGTTAATTGATGATATCTGTTATTTTTTAATATTGTATGAGTACAAATAAAACATGCTGATTGATTGTTAACATTAGTTGTTCCATGAGATTAGTCGAGGAGTGTGAACTAGCCCAGACAATCCCATATTTTTAAAAAATAAAATTGTTGATATTGATGTTGAGCTCTTCTATTTATGGATTTAATGGTGGATATTTTAATTCTGGGTCGATTCTGTGGTTGAAAATGACCTTGCTTGCCCTGTTCTCCTCGAATTGCTTTGCTCAAATAACACTTTTGATCGGGTTTTTATCTCTTGATTTTGTAGGATGTGGTTTTCACTGTGGAAACTCTTCTTGGTCAGCTATCTTTGTAGCTCTACGCATAGTTGCTTCCTGATTGTTGGATTTGAAGGATGTAATATGCTTTGATTTTACCTTTACTCTTCAAGCAATTTATCACACTTTCATGTGGTCTAATTACCTAAATCTTATATTCATTTTTCATTTTCTGTTTAGGTTACCACTTTTTATTGTCTGCAGGAGATTTTCTTTTGATTTTTGCATACATGTCCAAATTTTGAACTTTTTTAGTTGCTATCTCAAATTCTCCTATTAAGCACAGCCTTAAGCCTTTCCAACTATGCTTCTACCTGTCTTCCCTTCTTCCTTCTTGCTACCGTGTAACACCTTTCTTTTATTGTCATTTTCCTTTTCTAGAGAGACAAGATTAGATTAATCACTATATATATGTATATTGCATTTAATTCAAG

mRNA sequence

CTGGGTTTCTTATTCTTTATTTTATAAAAAAAAACCCAGCAAGAGGACAACGATTTTCGTACCAGGAAGAAGGAAGAATCTCCCCATATCATAAGGTCAAGGTTTCGGTTCCAGTAATCGAAGCCGTTCAAGTTGTAATACATGGAGATTAGCGGAGCAACAGAGGCCTTGAATCGCGTTCCTTTATCAGAGGTTGTTTCTGATTGCGTCAAAAGATGGTTCAAGGACACTTTGAAGGAAGCCAAAGCTGGCGATATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCTCGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCCGTCTGGAAAGTTAGTGATAAACATCCAGGCTATAATGCCAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTTAACTACTCCAGTGTTGCTGATTTCTCTATGTCATGTCAAAACAACCACTGGATGTGGTTTTCACTGTGGAAACTCTTCTTGGTCAGCTATCTTTGTAGCTCTACGCATAGTTGCTTCCTGATTGTTGGATTTGAAGGATGTAATATGCTTTGATTTTACCTTTACTCTTCAAGCAATTTATCACACTTTCATGTGGTCTAATTACCTAAATCTTATATTCATTTTTCATTTTCTGTTTAGGTTACCACTTTTTATTGTCTGCAGGAGATTTTCTTTTGATTTTTGCATACATGTCCAAATTTTGAACTTTTTTAGTTGCTATCTCAAATTCTCCTATTAAGCACAGCCTTAAGCCTTTCCAACTATGCTTCTACCTGTCTTCCCTTCTTCCTTCTTGCTACCGTGTAACACCTTTCTTTTATTGTCATTTTCCTTTTCTAGAGAGACAAGATTAGATTAATCACTATATATATGTATATTGCATTTAATTCAAG

Coding sequence (CDS)

ATGGAGATTAGCGGAGCAACAGAGGCCTTGAATCGCGTTCCTTTATCAGAGGTTGTTTCTGATTGCGTCAAAAGATGGTTCAAGGACACTTTGAAGGAAGCCAAAGCTGGCGATATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCTCGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCCGTCTGGAAAGTTAGTGATAAACATCCAGGCTATAATGCCAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTTAA

Protein sequence

MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS*

Homology

[Close]

BLAST of CSPI03G30920 vs. ExPASy TrEMBL
Match: A0A0A0LCP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730830 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.2e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. ExPASy TrEMBL
Match: A0A1S3B5I4 (uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.8e-49
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE LNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. ExPASy TrEMBL
Match: A0A5D3DNP0 (Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00440 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.8e-49
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE LNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. ExPASy TrEMBL
Match: A0A6J1DSS4 (uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024062 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.6e-48
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE L+RVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of CSPI03G30920 vs. ExPASy TrEMBL
Match: A0A6J1J881 (uncharacterized protein LOC111482171 OS=Cucurbita maxima OX=3661 GN=LOC111482171 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE L+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. NCBI nr
Match: XP_011651845.1 (uncharacterized protein LOC101206121 [Cucumis sativus] >KGN58719.1 hypothetical protein Csa_001055 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. NCBI nr
Match: XP_008442362.1 (PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442364.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_038903442.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903443.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903444.1 uncharacterized protein LOC120090028 [Benincasa hispida] >KAA0044203.1 Sel1-like protein [Cucumis melo var. makuwa] >TYK24929.1 Sel1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE LNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. NCBI nr
Match: XP_022157335.1 (uncharacterized protein LOC111024062 [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE L+RVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of CSPI03G30920 vs. NCBI nr
Match: XP_022934323.1 (uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022934324.1 uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022983617.1 uncharacterized protein LOC111482171 [Cucurbita maxima] >XP_022983618.1 uncharacterized protein LOC111482171 [Cucurbita maxima] >XP_023526158.1 uncharacterized protein LOC111789719 [Cucurbita pepo subsp. pepo] >XP_023526159.1 uncharacterized protein LOC111789719 [Cucurbita pepo subsp. pepo] >KAG6580446.1 hypothetical protein SDJN03_20448, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017199.1 hypothetical protein SDJN02_19061, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TE L+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CSPI03G30920 vs. NCBI nr
Match: XP_022971526.1 (uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971528.1 uncharacterized protein LOC111470221 [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           MEISG TEALNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD++T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 100

[Close]

BLAST of CSPI03G30920 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-36
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 13  VPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRIWMTKASRS 72
           VPLS VVSDC KRWFKDTL+EAKAG+I MQVL+GQMYYSGYGVP+DA+KGR+W+TKASR 
Sbjct: 55  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114

Query: 73  RSSVWKVSDKHPGYNASDSDSD 95
           RSSVWKV DK PGYNASDSDS+
Sbjct: 115 RSSVWKVIDKRPGYNASDSDSE 136

[Close]

BLAST of CSPI03G30920 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 144.8 bits (364), Expect = 3.7e-35
Identity = 63/92 (68.48%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 4   SGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGR 63
           +  ++ +NRVPL++VV DCV+RWF+DTLKEAK+GD+ MQVLVGQMY SGYG+P+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYNASDSDSDE 96
            W+ KASR+RSS W+VSDK PGYNASDSDS++
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGYNASDSDSND 160

[Close]

BLAST of CSPI03G30920 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 131.0 bits (328), Expect = 5.5e-31
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 4   SGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGR 63
           +  ++ +NRVPL++VV DCV+RWF+DTLKEAK+GD+ MQVLVGQMY SGYG+P+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYN 88
            W+ KASR+RSS W+VSDK PG N
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGNN 152

The following BLAST results are available for this feature:

BLAST of CSPI03G30920 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G30920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCP0	9.2e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730830 PE=4 SV=1	[more]
A0A1S3B5I4	7.8e-49	98.00	uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=...	[more]
A0A5D3DNP0	7.8e-49	98.00	Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A6J1DSS4	6.6e-48	96.00	uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1J881	1.1e-47	95.00	uncharacterized protein LOC111482171 OS=Cucurbita maxima OX=3661 GN=LOC111482171...	[more]

BLAST of CSPI03G30920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651845.1	1.9e-49	100.00	uncharacterized protein LOC101206121 [Cucumis sativus] >KGN58719.1 hypothetical ...	[more]
XP_008442362.1	1.6e-48	98.00	PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 P...	[more]
XP_022157335.1	1.4e-47	96.00	uncharacterized protein LOC111024062 [Momordica charantia]	[more]
XP_022934323.1	2.3e-47	95.00	uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022934324.1 unchar...	[more]
XP_022971526.1	2.6e-46	93.00	uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharac...	[more]

BLAST of CSPI03G30920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38450.1	5.7e-36	82.93	CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha...	[more]
AT5G05360.1	3.7e-35	68.48	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G05360.2	5.5e-31	66.67	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006597	Sel1-like repeat	SMART	SM00671	sel1	coord: 39..74 e-value: 6.3E-4 score: 29.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 16..78 e-value: 1.1E-7 score: 33.7
None	No IPR available	PANTHER	PTHR36792:SF6	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..88
None	No IPR available	PANTHER	PTHR36792	EXPRESSED PROTEIN	coord: 2..88
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 31..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G30920.1	CSPI03G30920.1	mRNA
CSPI03G30920.2	CSPI03G30920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding