CSPI03G30580 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G30580
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein TonB isoform X1
LocationChr3: 27989150 .. 27989578 (-)
RNA-Seq ExpressionCSPI03G30580
SyntenyCSPI03G30580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCACCATTCCTCAGTCGACTGAAACAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTCTACACAAGCTCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTAATTAGACCAGCTAGCAACACCAGTAACCGGTGCGTATTTTTTAATTCTTGCAGTCCTAACCTTGCGGGATTCTTGGGCTTGCTGCAAGTTTATTAGGAGGCAAGCAGGTGGTATCCCATACCAAGAGCTTGAAATGGCAGTGCCAGAATCTTCCTCAGCTTGGAACTGCTGAAGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAATTCACCAGGGAGGCCTCATATTGGAAACATTTCAGCTAATGAGCTTACTGCTAGGTCCAACAAAGATGGGTGGGAGAATGATTGGGATGTTTAG

mRNA sequence

ATCACCATTCCTCAGTCGACTGAAACAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTCTACACAAGCTCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTAATTAGACCAGCTAGCAACACCAGTAACCGTGCCAGAATCTTCCTCAGCTTGGAACTGCTGAAGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAATTCACCAGGGAGGCCTCATATTGGAAACATTTCAGCTAATGAGCTTACTGCTAGGTCCAACAAAGATGGGTGGGAGAATGATTGGGATGTTTAG

Coding sequence (CDS)

ATCACCATTCCTCAGTCGACTGAAACAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTCTACACAAGCTCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTAATTAGACCAGCTAGCAACACCAGTAACCGTGCCAGAATCTTCCTCAGCTTGGAACTGCTGAAGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAATTCACCAGGGAGGCCTCATATTGGAAACATTTCAGCTAATGAGCTTACTGCTAGGTCCAACAAAGATGGGTGGGAGAATGATTGGGATGTTTAG

Protein sequence

ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLELLKVGMMIGMNKNSVNSPGRPHIGNISANELTARSNKDGWENDWDV*
Homology
BLAST of CSPI03G30580 vs. ExPASy TrEMBL
Match: A0A5D3DMT9 (Protein TonB isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00160 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.0e-27
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 21  ECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLELLKVGMMIGMNKNSVNSPGRP 80
           E   +T  L+  + TFSAS LIRPASNTSNRARIFL L+ LKVGMMIGMNKNSV SPGRP
Sbjct: 5   ESACFTQDLLYLEKTFSASTLIRPASNTSNRARIFLGLKRLKVGMMIGMNKNSVKSPGRP 64

Query: 81  HIGNISANELTARSNKDGWENDWDV 106
           HIGNISAN LTARSNKDG ENDWDV
Sbjct: 65  HIGNISANGLTARSNKDGRENDWDV 89

BLAST of CSPI03G30580 vs. ExPASy TrEMBL
Match: A0A0A0LD85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728040 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 52  ARIFLSLELLKVGMMIGMNKNSVNSPGRPHIGNISANELTARSNKDGWENDWDV 106
           ARIFLSLELLKVGMMIGMNKNSVNSPGRPHIGNISANELTARSNKDGWENDWDV
Sbjct: 53  ARIFLSLELLKVGMMIGMNKNSVNSPGRPHIGNISANELTARSNKDGWENDWDV 106

BLAST of CSPI03G30580 vs. ExPASy TrEMBL
Match: A0A6J1F4I5 (uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC111442092 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 64/149 (42.95%), Postives = 71/149 (47.65%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLEL 60
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P     +   N A  FL L +
Sbjct: 195 ITIPLTTETSYKLILDAGNGECVLYRSPLVSGENLFLHLPSFDQLATPVNGA-YFLILAV 254

Query: 61  LKVGMMIGMNK--------------------------------------------NSVNS 106
           L  G      K                                            N+V S
Sbjct: 255 LIFGGSWACCKFRRRQAGGIPYQELEMALPESSSAVNVETADGWDQGWDDDWDEENAVKS 314

BLAST of CSPI03G30580 vs. ExPASy TrEMBL
Match: A0A6J1J516 (uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 59/147 (40.14%), Postives = 70/147 (47.62%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFL---- 60
           ITIP +TETS KL+LD GNGECVLY S LVS ++ F   P     +   N A   +    
Sbjct: 194 ITIPLTTETSTKLVLDAGNGECVLYRSPLVSRENLFLHLPSFDQLATPVNGAYFLILAVL 253

Query: 61  ---------------------SLELLKVGMMIGMN-----------------KNSVNSPG 106
                                 LE+        +N                 +N+V SPG
Sbjct: 254 FGGSWACCKFRRRQAGGIPYQELEMALPESSSAVNVETADGWDQGWDDDWDEENAVKSPG 313

BLAST of CSPI03G30580 vs. ExPASy TrEMBL
Match: A0A6J1FLM5 (uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC111446930 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 59/148 (39.86%), Postives = 68/148 (45.95%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFL---- 60
           ITIP +T    KL+LD GNGECVLYTS LVSG+D F   P         N A   +    
Sbjct: 194 ITIPLTTLKDMKLVLDAGNGECVLYTSPLVSGEDLFLHLPSFDQLVTPVNGAYFLILAVL 253

Query: 61  ------------------------------SLELLKVGMMIGMN---------KNSVNSP 106
                                         S   +KV    G +         +N+V SP
Sbjct: 254 IFGGSWACFKLRRRQAGGIPYQELEMALPESSSAVKVETAEGWDQGWDDDWDEENAVKSP 313

BLAST of CSPI03G30580 vs. NCBI nr
Match: TYK24904.1 (protein TonB isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-27
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 21  ECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLELLKVGMMIGMNKNSVNSPGRP 80
           E   +T  L+  + TFSAS LIRPASNTSNRARIFL L+ LKVGMMIGMNKNSV SPGRP
Sbjct: 5   ESACFTQDLLYLEKTFSASTLIRPASNTSNRARIFLGLKRLKVGMMIGMNKNSVKSPGRP 64

Query: 81  HIGNISANELTARSNKDGWENDWDV 106
           HIGNISAN LTARSNKDG ENDWDV
Sbjct: 65  HIGNISANGLTARSNKDGRENDWDV 89

BLAST of CSPI03G30580 vs. NCBI nr
Match: KAE8650967.1 (hypothetical protein Csa_001119, partial [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSN 51
          ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSN
Sbjct: 1  ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSN 50

BLAST of CSPI03G30580 vs. NCBI nr
Match: XP_038904076.1 (uncharacterized protein LOC120090465 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 5.0e-16
Identity = 61/148 (41.22%), Postives = 67/148 (45.27%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLEL 60
           ITIP+  ETS KL+LD GNGECVLYT   VSGQD F   P     +   N A   +   L
Sbjct: 191 ITIPRMAETSMKLVLDAGNGECVLYTGPPVSGQDLFLHLPSFDQLATPVNGAYFLILAVL 250

Query: 61  LKVGMMIGM-------------------------------------------NKNSVNSP 106
           +  G                                                 +NSV SP
Sbjct: 251 IFGGSWASCKFRRRQAGGIPYQELEMAVPEFSSAVNLETAEGWDQGWDDDWDEENSVKSP 310

BLAST of CSPI03G30580 vs. NCBI nr
Match: XP_023528429.1 (uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-15
Identity = 64/149 (42.95%), Postives = 71/149 (47.65%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLEL 60
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P     +   N A  FL L +
Sbjct: 195 ITIPLTTETSMKLILDAGNGECVLYRSPLVSGENLFLHLPSFDQLATPVNGA-YFLFLAV 254

Query: 61  LKVGMMIGMNK--------------------------------------------NSVNS 106
           L  G      K                                            N+V S
Sbjct: 255 LIFGGSWACCKFRRRQAGGIPYQELEMALPESSSAVNIETADGWDQGWDDDWDEENAVKS 314

BLAST of CSPI03G30580 vs. NCBI nr
Match: KAG7017185.1 (hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-15
Identity = 64/149 (42.95%), Postives = 71/149 (47.65%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNRARIFLSLEL 60
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P     +   N A  FL L +
Sbjct: 195 ITIPLTTETSMKLILDAGNGECVLYRSPLVSGENLFLHLPSFDQLATPVNGA-YFLILAV 254

Query: 61  LKVGMMIGMNK--------------------------------------------NSVNS 106
           L  G      K                                            N+V S
Sbjct: 255 LIFGGSWACCKFRRRQAGGIPYQELEMALPESSSAVNVETADGWDQGWDDDWDEENAVKS 314

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DMT94.0e-2778.82Protein TonB isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LD856.5e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728040 PE=4 SV=1[more]
A0A6J1F4I51.6e-1542.95uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC1114420... [more]
A0A6J1J5161.3e-1440.14uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426... [more]
A0A6J1FLM55.0e-1439.86uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC1114469... [more]
Match NameE-valueIdentityDescription
TYK24904.18.2e-2778.82protein TonB isoform X1 [Cucumis melo var. makuwa][more]
KAE8650967.16.9e-18100.00hypothetical protein Csa_001119, partial [Cucumis sativus][more]
XP_038904076.15.0e-1641.22uncharacterized protein LOC120090465 [Benincasa hispida][more]
XP_023528429.12.5e-1542.95uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo][more]
KAG7017185.12.5e-1542.95hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..94
NoneNo IPR availablePANTHERPTHR34200:SF2TRANSMEMBRANE PROTEINcoord: 71..104
NoneNo IPR availablePANTHERPTHR34200DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1coord: 71..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G30580.1CSPI03G30580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane