CSPI03G29840 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G29840
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	AAI domain-containing protein
Location	Chr3: 27345570 .. 27345985 (-)
RNA-Seq Expression	CSPI03G29840
Synteny	CSPI03G29840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGGTACGAACCTCAATCCCTTATAAATTTAATGCTAAATGTACATTGTTTTTCACAACACAGTTTTTGTTATTGTTCAAGAACATGGGGTATCTAAGCATGAAATGTCTATCAGTTTGGTTGTTTTTGTTGGCAACAAGTTTGGCCGAAAAAGGCAAAGGGGAAACTTGTAGTTTCACCTTCTTCTCTTCCCTTGCTAGGTTGATGCCTTGTAGGCCATCGGTTGCTCCATTCCGGCCCATCCCACCGACCGTGGCCTGTTGCAATGCAATCAAAACTCTCGGCCAGCCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCTATTACCGGCGTTGATCGTGAGTTGGCCATGCTGTTGCCGCAGAAGTGCACTGCCAATTTTGATCCATGTACACTCTCTCAATCTCTTTCCTAA

mRNA sequence

TAATGGTACGAACCTCAATCCCTTATAAATTTAATGCTAAATGTACATTGTTTTTCACAACACAGTTTTTGTTATTGTTCAAGAACATGGGGTATCTAAGCATGAAATGTCTATCAGTTTGGTTGTTTTTGTTGGCAACAAGTTTGGCCGAAAAAGGCAAAGGGGAAACTTGTAGTTTCACCTTCTTCTCTTCCCTTGCTAGGTTGATGCCTTGTAGGCCATCGGTTGCTCCATTCCGGCCCATCCCACCGACCGTGGCCTGTTGCAATGCAATCAAAACTCTCGGCCAGCCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCTATTACCGGCGTTGATCGTGAGTTGGCCATGCTGTTGCCGCAGAAGTGCACTGCCAATTTTGATCCATGTACACTCTCTCAATCTCTTTCCTAA

Coding sequence (CDS)

ATGGTACGAACCTCAATCCCTTATAAATTTAATGCTAAATGTACATTGTTTTTCACAACACAGTTTTTGTTATTGTTCAAGAACATGGGGTATCTAAGCATGAAATGTCTATCAGTTTGGTTGTTTTTGTTGGCAACAAGTTTGGCCGAAAAAGGCAAAGGGGAAACTTGTAGTTTCACCTTCTTCTCTTCCCTTGCTAGGTTGATGCCTTGTAGGCCATCGGTTGCTCCATTCCGGCCCATCCCACCGACCGTGGCCTGTTGCAATGCAATCAAAACTCTCGGCCAGCCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCTATTACCGGCGTTGATCGTGAGTTGGCCATGCTGTTGCCGCAGAAGTGCACTGCCAATTTTGATCCATGTACACTCTCTCAATCTCTTTCCTAA

Protein sequence

MVRTSIPYKFNAKCTLFFTTQFLLLFKNMGYLSMKCLSVWLFLLATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACCNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTLSQSLS*

Homology

[Close]

BLAST of CSPI03G29840 vs. ExPASy TrEMBL
Match: A0A1S3CFZ5 (protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.9e-54
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 16  LFFTTQFLLLFKNMGYLSMKCLSVWLFLLA-TSLAEKGKGETCSFTFFSSLARLMPCRPS 75
           +F  T+FLLL KNMGYLSMKCL VWLFLLA TSL EKGKGETCSFTFFSSLARLMPCRPS
Sbjct: 4   VFHNTKFLLLCKNMGYLSMKCLPVWLFLLATTSLVEKGKGETCSFTFFSSLARLMPCRPS 63

Query: 76  VAPFRPIPPTVACCNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTLS 134
           VAPFRPIPPTVACCNA+KTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTA+FDPC +S
Sbjct: 64  VAPFRPIPPTVACCNAVKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTADFDPCEMS 122

[Close]

BLAST of CSPI03G29840 vs. ExPASy TrEMBL
Match: A0A6J1GCG0 (protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFL-LATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 88
           MG+L MKC+SVW+FL + TSL+E+ KGETCSFTFFSSL RL+PCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 89  CNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTL 133
           CNA+++LGQPCLCVLVNGPP+ GVDR+L MLLP+KC  NFDPC +
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEI 105

[Close]

BLAST of CSPI03G29840 vs. ExPASy TrEMBL
Match: A0A6J1KEI1 (protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFL-LATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 88
           M +L MKC+SVW+FL + TSL+E+ KGETCSFTFFSSL RL+PCRPSVAPFRPIPPT AC
Sbjct: 1   MRFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAAC 60

Query: 89  CNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTL 133
           CNA+++LGQPCLCVLVNGPP+ GVDR+L MLLP+KC  NFDPC +
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEI 105

[Close]

BLAST of CSPI03G29840 vs. ExPASy TrEMBL
Match: A0A6J1DFH7 (protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.3e-41
Identity = 83/105 (79.05%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFLLA-TSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 88
           MG+L MK LS W+FLL  TSL E+ KGETC FTFFSSL RL+PCRPSVAPFR IPPT AC
Sbjct: 1   MGFLGMKFLSAWVFLLVMTSLGEQSKGETCRFTFFSSLVRLLPCRPSVAPFRAIPPTEAC 60

Query: 89  CNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTL 133
           C A+KTLGQPCLCVLVNGPPI GVDR+LAMLLP+KC ANFDPC L
Sbjct: 61  CKAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCNANFDPCEL 105

[Close]

BLAST of CSPI03G29840 vs. ExPASy TrEMBL
Match: A0A151S324 (AAI domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_029106 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-31
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 31  YLSMKCLSVW-LFLLATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACCN 90
           Y  MK  S+W + ++ T L  + +   C+ TFFSSL +L+PCR +VAPF PIPP+ ACCN
Sbjct: 5   YSKMKFCSLWFMLMMGTGLVAQVQSSPCTSTFFSSLVQLIPCRAAVAPFSPIPPSDACCN 64

Query: 91  AIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTLSQSLS 138
           A+K LGQPCLCVLVNGPPI+GVDR +A LLP KCTANF+PC LS SLS
Sbjct: 65  ALKALGQPCLCVLVNGPPISGVDRSMASLLPDKCTANFEPCHLSLSLS 112

[Close]

BLAST of CSPI03G29840 vs. NCBI nr
Match: XP_008461785.1 (PREDICTED: protein LIM3 [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 16  LFFTTQFLLLFKNMGYLSMKCLSVWLFLLA-TSLAEKGKGETCSFTFFSSLARLMPCRPS 75
           +F  T+FLLL KNMGYLSMKCL VWLFLLA TSL EKGKGETCSFTFFSSLARLMPCRPS
Sbjct: 4   VFHNTKFLLLCKNMGYLSMKCLPVWLFLLATTSLVEKGKGETCSFTFFSSLARLMPCRPS 63

Query: 76  VAPFRPIPPTVACCNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTLS 134
           VAPFRPIPPTVACCNA+KTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTA+FDPC +S
Sbjct: 64  VAPFRPIPPTVACCNAVKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTADFDPCEMS 122

[Close]

BLAST of CSPI03G29840 vs. NCBI nr
Match: XP_004149605.1 (protein LIM1 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFLLATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACC 88
           MGYLSMKCLSVWLFLLATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACC
Sbjct: 1   MGYLSMKCLSVWLFLLATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACC 60

Query: 89  NAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTLS 134
           NAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPC +S
Sbjct: 61  NAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCEMS 105

[Close]

BLAST of CSPI03G29840 vs. NCBI nr
Match: XP_038903285.1 (protein LIM3 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 93/105 (88.57%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFLLA-TSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 88
           MGYLSMK LSVW+FLLA TSLAE+ KGETCSFTFFSSL RLMPCRPSVAPFRPIPPTVAC
Sbjct: 1   MGYLSMKFLSVWVFLLATTSLAEQSKGETCSFTFFSSLVRLMPCRPSVAPFRPIPPTVAC 60

Query: 89  CNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTL 133
           CNA+KTLGQPCLCVLVNGPPI GVDR+LAMLLP+KCTANFDPC +
Sbjct: 61  CNAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEI 105

[Close]

BLAST of CSPI03G29840 vs. NCBI nr
Match: XP_022949330.1 (protein LIM1-like [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFL-LATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 88
           MG+L MKC+SVW+FL + TSL+E+ KGETCSFTFFSSL RL+PCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 89  CNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTL 133
           CNA+++LGQPCLCVLVNGPP+ GVDR+L MLLP+KC  NFDPC +
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEI 105

[Close]

BLAST of CSPI03G29840 vs. NCBI nr
Match: KAG7036573.1 (hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-41
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 29  MGYLSMKCLSVWLFL-LATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVAC 88
           MG+L MKC+SVW+FL + TSL E+ KGETCSFTFFSSL RL+PCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 89  CNAIKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTANFDPCTL 133
           CNA+++LGQPCLCVLVNGPP+ GVDR+L MLLP+KC  NFDPC +
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEI 105

[Close]

BLAST of CSPI03G29840 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 3.9e-27
Identity = 48/76 (63.16%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 57  CSFTFFSSLARLMPCRPSVAPFRPIPPTVACCNAIKTLGQPCLCVLVNGPPITGVDRELA 116
           CS TFFS+L +L+PCR +VAPF PIPPT  CC+A+ TLG+PCLC+L NGPP++G+DR +A
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 117 MLLPQKCTANFDPCTL 133
           + LPQ+C+ANF PC +
Sbjct: 108 LQLPQRCSANFPPCDI 123

[Close]

BLAST of CSPI03G29840 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 41  LFLLATSLAEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPPTVACCNAIKTLGQPCLC 100
           + ++ + L  +  G  C  TF S+L +L+PCRPSVAPF  +PP   CC AIKTLGQPCLC
Sbjct: 16  MVMVQSGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCLC 75

Query: 101 VLVNGPPITGVDRELAMLLPQKCTANFDPC 131
           VL  GPPI GVDR LA+ LP KC+ANF PC
Sbjct: 76  VLAKGPPIVGVDRTLALHLPGKCSANFLPC 105

The following BLAST results are available for this feature:

BLAST of CSPI03G29840 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G29840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFZ5	4.9e-54	89.92	protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1	[more]
A0A6J1GCG0	1.3e-41	75.24	protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1	[more]
A0A6J1KEI1	2.8e-41	75.24	protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1	[more]
A0A6J1DFH7	6.3e-41	79.05	protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1	[more]
A0A151S324	2.0e-31	62.96	AAI domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_029106 PE=4 SV=1	[more]

BLAST of CSPI03G29840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461785.1	1.0e-53	89.92	PREDICTED: protein LIM3 [Cucumis melo]	[more]
XP_004149605.1	5.1e-53	98.10	protein LIM1 [Cucumis sativus]	[more]
XP_038903285.1	1.6e-46	88.57	protein LIM3 [Benincasa hispida]	[more]
XP_022949330.1	2.6e-41	75.24	protein LIM1-like [Cucurbita moschata]	[more]
KAG7036573.1	3.4e-41	75.24	hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI03G29840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52130.1	3.9e-27	63.16	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G07450.1	1.9e-26	58.89	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 65..129 e-value: 3.9E-7 score: 30.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 60..130 e-value: 2.5E-12 score: 48.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 65..131
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 35..132
None	No IPR available	PANTHER	PTHR33122:SF33	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 35..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G29840.1	CSPI03G29840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005504	fatty acid binding