CSPI03G29520 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G29520
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA polymerase sigma factor sigD
Location	Chr3: 27071185 .. 27074717 (+)
RNA-Seq Expression	CSPI03G29520
Synteny	CSPI03G29520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCTTCTATCCATTTGCTACAACAAAACTTTGGTGGTTATACAAAAAAAATCCCAAATGCTAAAAAAGAATCCTAACTTTTAAAAGCCCTTTTCCATTCTTCCTTCGTGCCCCTCTTTGCTTATGGCCACTACCAGCAGCTTATGTTCATTACCTGCTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGACCCAACATTATCAGCAATGACACATTAACCCTTCCTCCGCCGCCGGAAGCGGCTGGGGTGGCGGTAGAAGCGGCGGGAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGCGGTAGAAGCGGCGGGAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGGTGATGGGACTGTAGCTTGGAAGAAAAAGAGAAGGAAAAGGAGGAAAGAGGTAGGGGTGAAAGCTGAAGAAAATTGGATTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGTTGGTTTTAGTAAAGATTTAATGAGTTTTTTTGTCCTTGTCTGTGTCACATTGCCACCATTTACTTCATTAAGGAGCTTACTTGAGGAGATCAGGTAAATGTATGAAAAACACTGCAAGAGTCTCTTCTTTTCCCTTTGTTAATACGTGAATATATTTATTTTCTTCTTTATAAAGTGTTTTTGAGGTATCCTAGAAGAAGAAGAAGAAAGAAGGCTTCTTATTGTGTTGTGGTTTTAAATGCCAGAACTTCAAATTCTTTGTTTTGTTCTCCATTTTGGTTATTGTTGTTAAGTTTTCACATTGTATGCCAAACTCAATGTATGCGGCAGAATGCTAGTCTATATTCTTGAGAGAGGTCAAAATGAAATTGAAAATTTAGAGGCTTAGGAACCAAGATAGATTTAAGTCTTTTATCCTTTAGATCATGTCAAATTATTTGCCACGTTAATATATAAAGGAAAGCTCTGCGTATCTTAAACTCTTAACAGGAGGCAGTACTGCTTGAAAACGTGAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTGGCCATTGCAATGGGCACCAAATCAGGGTGTATAGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTGGTGATTTCAATTGCTGCTCCATATCAAGGCAAAGGATTAAGCCTTCAAGACCTCACTCAGGTAGGTTGTTGCACGTACTCTTTTGGATTATTGTTTTCTGTGGTTTATTTTGTTCAAAGGGTTTGTTTGTTTTTGTAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAGCTATCATTCGAGCCTTGGATAAAAAGTCAAGACTTGTTAGACTGCCGGTAAGATACTGACTCAATTGCTCATTTTTCTAATTCTAATTATCATATAGAGGGTCTAGAGAAGAAGCTTCAAATCACAATAAGTTTTTGAGAAAAAGGTAGCATTTTTTAATACATTGCATATGAATACAATCCATAACCTGTTCAGTTAAAAACCTCATCGTAGGCTCTACGTATATTGGTAGGTTTTGGTGACAAGCTTTTTATTGGGTCATATTACTTTATTGGAGCCCTTTTTGTGGTTTACCTCCATTTGTTGACTTTATTTTTCGTATGCACTTGTATTATTTCATCAGGTCAATTGAGAATTTTAACAAAAAAAATGAAAAAGAAAGTTCAGTTGAAAAGATAAACAAAAGTAATGAGCAGCAAACTAAGTTGGATTAATGACAAGACTCATAGAAATCAATAAGGTAATAAGTAAGAGACTTTTGTTATATCACCTTTTAACAAAATGGGGAAAAGTAAATCTGTTTCGAAGATCTGTTTTTTTTTTTTTATTATTATTTATTTCCATAACGTTCTGTTTGCTGAGAAATTTAAGCATGGGAAAGTGAGTTGGTAATAACTGAATGCATGGGTAGCTCGCCGTGTTCAGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGAGAATAATCATCTTGGCATAAAGTTATCGAGACCTCCCACCAACAAGGAAGTTGCTGAATCTCTTAAAGTCCATCTTTCAACCATAAGACTAGTAATGGAAAGGAGCAAGCGCCCAATTTCAATCAATCAACCAGTAAATGACCGAAGTTGCTTAACTCTGCAGGTACTACTGTTCTCTTACTAGAGGGGATGCCCACATTTTCATTCTTCTTTACGTATTGCACAATGACAACATCTGCAAGGAATGTCACGTATGCAATTGCCTTTTGATCTTTAGGAATCAGGATTTACGATTTTAGTCTCTTTAATGTTCATAAAATTAGTAATCAATGACATTTCCCACATGCTCATCTACAAGTATAACTAAAGTAATGCCATGCTCTTATCTCCTCTGTTCAACATTTCCAAACGAGAGGTTGAACATCAAATGGATTGCATACCAATAAGATTGGTATACTTGGGGTTTGCTTATTAATATTGGAACGAACTAAGTTGTTAGAAGAAGTTCAAATAATTTTATTTGGCAACTGCCTTAATCCTAGGTAGATAGCTACCACAGAAAATAGTAGTTAACTTCTATGGTTATGTTTTTGTTTCAGTGACTAAGATATGATGTTGAAACAATTCTTTGTCAATGTTGTGCAGGAGATCATGCCTGGACCAGACAATTTGACACCAGAGAATATGGTAATGAGAAAATTGATGAAACAAGAACTGAAGAGGCTTCTTAATACTCTTAGCAAAAGAGAAGCACGCATATTGAGCTTATACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGCAAGTCATTGAATCTCTCTCGAGAGACAATTCGACAAACCAATATTGCCACATTGTCAAAACTAAAGAAGACCGACGTTCTAGACTATCTTAAAGATTATCTAGTGTAGATATTTCAAGCTATGATAAAAAGTTACAAGTAAAGATTTGATTGGATAGACTATTGAAGGATGTTGAAGAGTATTAATTGTATGCATCAAGATTTAAATCTATCTTTGGTACATCAAAGGAGTTATATGGGCTGCAAACAGTTGAAACGGATTTGATCGATATATGTAGAAGATCGATCGAGTAACTGGTCTTTTGTTTGCTGGTGTAAATAAGAAATAAGAAACCAAATCAATTGATGTTTACTTGATGTATTGCCTTGTTTTGTAAAATTAAACATGTTGACTTAAAAGTTTATGATACAATTGATAGTTGCTTGTAGACACTGTATCGACTAAGTGCATAATCCTGG

mRNA sequence

AATCCTTCTATCCATTTGCTACAACAAAACTTTGGTGGTTATACAAAAAAAATCCCAAATGCTAAAAAAGAATCCTAACTTTTAAAAGCCCTTTTCCATTCTTCCTTCGTGCCCCTCTTTGCTTATGGCCACTACCAGCAGCTTATGTTCATTACCTGCTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGACCCAACATTATCAGCAATGACACATTAACCCTTCCTCCGCCGCCGGAAGCGGCTGGGGTGGCGGTAGAAGCGGCGGGAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGCGGTAGAAGCGGCGGGAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGGTGATGGGACTGTAGCTTGGAAGAAAAAGAGAAGGAAAAGGAGGAAAGAGGTAGGGGTGAAAGCTGAAGAAAATTGGATTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGTACTGCTTGAAAACGTGAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTGGCCATTGCAATGGGCACCAAATCAGGGTGTATAGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTGGTGATTTCAATTGCTGCTCCATATCAAGGCAAAGGATTAAGCCTTCAAGACCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAGCTATCATTCGAGCCTTGGATAAAAAGTCAAGACTTGTTAGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGAGAATAATCATCTTGGCATAAAGTTATCGAGACCTCCCACCAACAAGGAAGTTGCTGAATCTCTTAAAGTCCATCTTTCAACCATAAGACTAGTAATGGAAAGGAGCAAGCGCCCAATTTCAATCAATCAACCAGTAAATGACCGAAGTTGCTTAACTCTGCAGGAGATCATGCCTGGACCAGACAATTTGACACCAGAGAATATGGTAATGAGAAAATTGATGAAACAAGAACTGAAGAGGCTTCTTAATACTCTTAGCAAAAGAGAAGCACGCATATTGAGCTTATACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGCAAGTCATTGAATCTCTCTCGAGAGACAATTCGACAAACCAATATTGCCACATTGTCAAAACTAAAGAAGACCGACGTTCTAGACTATCTTAAAGATTATCTAGTGTAGATATTTCAAGCTATGATAAAAAGTTACAAGTAAAGATTTGATTGGATAGACTATTGAAGGATGTTGAAGAGTATTAATTGTATGCATCAAGATTTAAATCTATCTTTGGTACATCAAAGGAGTTATATGGGCTGCAAACAGTTGAAACGGATTTGATCGATATATGTAGAAGATCGATCGAGTAACTGGTCTTTTGTTTGCTGGTGTAAATAAGAAATAAGAAACCAAATCAATTGATGTTTACTTGATGTATTGCCTTGTTTTGTAAAATTAAACATGTTGACTTAAAAGTTTATGATACAATTGATAGTTGCTTGTAGACACTGTATCGACTAAGTGCATAATCCTGG

Coding sequence (CDS)

ATGGCCACTACCAGCAGCTTATGTTCATTACCTGCTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGACCCAACATTATCAGCAATGACACATTAACCCTTCCTCCGCCGCCGGAAGCGGCTGGGGTGGCGGTAGAAGCGGCGGGAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGCGGTAGAAGCGGCGGGAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGGTGATGGGACTGTAGCTTGGAAGAAAAAGAGAAGGAAAAGGAGGAAAGAGGTAGGGGTGAAAGCTGAAGAAAATTGGATTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGTACTGCTTGAAAACGTGAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTGGCCATTGCAATGGGCACCAAATCAGGGTGTATAGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTGGTGATTTCAATTGCTGCTCCATATCAAGGCAAAGGATTAAGCCTTCAAGACCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAGCTATCATTCGAGCCTTGGATAAAAAGTCAAGACTTGTTAGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGAGAATAATCATCTTGGCATAAAGTTATCGAGACCTCCCACCAACAAGGAAGTTGCTGAATCTCTTAAAGTCCATCTTTCAACCATAAGACTAGTAATGGAAAGGAGCAAGCGCCCAATTTCAATCAATCAACCAGTAAATGACCGAAGTTGCTTAACTCTGCAGGAGATCATGCCTGGACCAGACAATTTGACACCAGAGAATATGGTAATGAGAAAATTGATGAAACAAGAACTGAAGAGGCTTCTTAATACTCTTAGCAAAAGAGAAGCACGCATATTGAGCTTATACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGCAAGTCATTGAATCTCTCTCGAGAGACAATTCGACAAACCAATATTGCCACATTGTCAAAACTAAAGAAGACCGACGTTCTAGACTATCTTAAAGATTATCTAGTGTAG

Protein sequence

MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV*

Homology

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BLAST of CSPI03G29520 vs. ExPASy Swiss-Prot
Match: Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.9e-86
Identity = 171/345 (49.57%), Postives = 238/345 (68.99%), Query Frame = 0


Query: 137 GTVAWKKKRRKRRKEV-------------GVKAEENWIALS-SGPLRPGYLSPKEEAELC 196
           G  + K+++R+RR+ V             GV+AE   I++   G  R G+LS  EE +LC
Sbjct: 73  GIQSEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLC 132

Query: 197 LCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSK 256
           L LKE   LEN+ T +   +E+E  +  LA   G K    + ILCR +E+R+++ RCY +
Sbjct: 133 LYLKEGAKLENLGTSV---EENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRR 192

Query: 257 LVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDK 316
           LV+SIA  YQGKGL+LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+QAI+RA+  
Sbjct: 193 LVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAH 252

Query: 317 KSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPI 376
           KSRLV+LPG M ++ A++AE +N L  KL R P+ +E+AE L +++S +RL +ERS+ P+
Sbjct: 253 KSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPV 312

Query: 377 SINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGL 436
           S+++  +    +TLQEI+ GPD   PE MV R+ MK E+++LL +L+ RE+R+L LYFGL
Sbjct: 313 SLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGL 372

Query: 437 NGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDY 468
           NGE P SFEEIGKSL LSRE +RQ N   L KL+    ++ LK Y
Sbjct: 373 NGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

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BLAST of CSPI03G29520 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 6.4e-50
Identity = 116/340 (34.12%), Postives = 197/340 (57.94%), Query Frame = 0


Query: 130 EESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPL-RPGYLSPKEEAELCLCLKEA 189
           +E  VG+   A  K + K RK       E+ I L    + R   L   EE EL   + + 
Sbjct: 64  DEDSVGEDEDAAAKAKAKVRKTY----TEDSIRLYLQEIGRIRLLRADEEIELARQIADL 123

Query: 190 VLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIA 249
           + LE ++  ++E  +  P++ + A A+ +      R L R R ++D++++   +LV+SIA
Sbjct: 124 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 183

Query: 250 APYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVR 309
             Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+  +SR +R
Sbjct: 184 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 243

Query: 310 LPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPV 369
           LP H+ + ++RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P+
Sbjct: 244 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 303

Query: 370 NDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQ 429
                  L + +   D  TPE+ V + L++++L+ +L+TLS RE  +L L +GL+    +
Sbjct: 304 GKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 363

Query: 430 SFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYL 469
           + EEIG+  N++RE IRQ     L KL+  +    LK+Y+
Sbjct: 364 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

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BLAST of CSPI03G29520 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.2e-49
Identity = 111/339 (32.74%), Postives = 193/339 (56.93%), Query Frame = 0


Query: 130 EESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAV 189
           +E     G  A  ++R + +K+   +          G +R   L   EE EL   + + +
Sbjct: 54  DEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIR--LLRADEEIELARKIADLL 113

Query: 190 LLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAA 249
            LE V+ R+ E  E +P + + A A+          L   R ++D++++   +LV+SIA 
Sbjct: 114 ELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAK 173

Query: 250 PYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRL 309
            Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+  +SR +RL
Sbjct: 174 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 233

Query: 310 PGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVN 369
           P H+ + ++RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P+ 
Sbjct: 234 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 293

Query: 370 DRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQS 429
                 L + +   D  TPE+ V + L++++L+++L++LS RE  +L L +GL+    ++
Sbjct: 294 KEEDSRLGDFIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 353

Query: 430 FEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYL 469
            EEIG+  N++RE IRQ     L KL+  +    LK+Y+
Sbjct: 354 LEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of CSPI03G29520 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-48
Identity = 120/390 (30.77%), Postives = 212/390 (54.36%), Query Frame = 0


Query: 80  EAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTV 139
           E+ G  E    + VE +EE      A       E K       +K +EK         T 
Sbjct: 186 ESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA----RRAKGLEKTASGIPSVKTG 245

Query: 140 AWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIM 199
           +  KK+R   +EV       ++ +++   +   L+ +EE EL   +++ + LE ++T + 
Sbjct: 246 SSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDLLKLERLQTELT 305

Query: 200 ETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQ 259
           E    +PT  Q A A G     + + +      +D++I+   +LVISIA  YQG G++LQ
Sbjct: 306 ERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 365

Query: 260 DLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVAR 319
           DL QEG  GL++GAE+F+  +G K STYA+WWI+QA+ ++L  +SR++RLP HM +   R
Sbjct: 366 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 425

Query: 320 IAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEI 379
           + E    L  +  + P N+E+AE+  + +  +  V+   K P S++Q +     L   E+
Sbjct: 426 VKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV 485

Query: 380 MPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNL 439
           +  P+ +T E++++++ M+Q+L ++L++L  RE +++   FG+     ++ +EIG+ + +
Sbjct: 486 IADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 545

Query: 440 SRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           SRE +RQ   +   KLK     ++L+ YLV
Sbjct: 546 SRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CSPI03G29520 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.7e-48
Identity = 114/335 (34.03%), Postives = 187/335 (55.82%), Query Frame = 0


Query: 123 SKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELC 182
           +KN    + + V D     +K   K++ + G   ++       GP     L+ KEEAEL 
Sbjct: 198 AKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELI 257

Query: 183 LCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSK 242
             ++  + LE VKT++      EPT  + A AMG  S  +   + R R SR++LI    +
Sbjct: 258 SHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLR 317

Query: 243 LVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDK 302
           LV+ IA  YQ +GL+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ +
Sbjct: 318 LVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQ 377

Query: 303 KSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPI 362
            SR +RLP ++  ++ +++E       + +  P+ +E+A  + V    +  ++  ++ P+
Sbjct: 378 NSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPL 437

Query: 363 SINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGL 422
           S+ QP+      T QEI P     TP   V ++LM+  ++ LLN LS +E RI+ L FG+
Sbjct: 438 SMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGI 497

Query: 423 NGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKK 458
           +G   +S  EIG+   LS+E +RQ     L +LK+
Sbjct: 498 DGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of CSPI03G29520 vs. ExPASy TrEMBL
Match: A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)

HSP 1 Score: 833.9 bits (2153), Expect = 3.2e-238
Identity = 434/469 (92.54%), Postives = 435/469 (92.75%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PPPEAA                                  +AVEAAGEHVLVEAKGFSED
Sbjct: 61  PPPEAA---------------------------------VLAVEAAGEHVLVEAKGFSED 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE
Sbjct: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY
Sbjct: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL
Sbjct: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF
Sbjct: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV
Sbjct: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 436

[Close]

BLAST of CSPI03G29520 vs. ExPASy TrEMBL
Match: A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)

HSP 1 Score: 801.6 bits (2069), Expect = 1.8e-228
Identity = 415/469 (88.49%), Postives = 428/469 (91.26%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PPPEAA                                  +AVEAAGEHVLVEA+GFSED
Sbjct: 61  PPPEAA---------------------------------VLAVEAAGEHVLVEARGFSED 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           WSSKNVE+MEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE
Sbjct: 121 WSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEAVLLE VK+RIMETQEHEPTNKQLAIAMGTK GCIDRILCRARESRDRLIRCY
Sbjct: 181 LCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRILCRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLSTYAYWWIRQAIIRAL
Sbjct: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLSTYAYWWIRQAIIRAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTN+EVAESLKV +ST+RLVMERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRLVMERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDRSCLTLQEI+PGPDNLTPENMVMRKLMKQELKRLLNTLSKREA ILSLYF
Sbjct: 361 PISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNGEIPQSFEEIGKSLNLSRETIR+ NIATLSKLKKT+VLDY+KDYLV
Sbjct: 421 GLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV 436

[Close]

BLAST of CSPI03G29520 vs. ExPASy TrEMBL
Match: A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)

HSP 1 Score: 779.6 bits (2012), Expect = 7.2e-222
Identity = 402/456 (88.16%), Postives = 415/456 (91.01%), Query Frame = 0


Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAGVAVEAA 73
           SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLPPPPEAA       
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAA------- 110

Query: 74  GEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC 133
                                      +AVEAAGEHVLVEA+GFSEDWSSKNVE+MEESC
Sbjct: 111 --------------------------VLAVEAAGEHVLVEARGFSEDWSSKNVERMEESC 170

Query: 134 VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEN 193
           VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLE 
Sbjct: 171 VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEK 230

Query: 194 VKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQG 253
           VK+RIMETQEHEPTNKQLAIAMGTK GCIDRILCRARESRDRLIRCYSKLVISIAAPYQG
Sbjct: 231 VKSRIMETQEHEPTNKQLAIAMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQG 290

Query: 254 KGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHM 313
           KGLSLQDLTQEGNIGLLKGAERFEP+RGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHM
Sbjct: 291 KGLSLQDLTQEGNIGLLKGAERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHM 350

Query: 314 GQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSC 373
           GQMVARIAEENNHLGIKLSRPPTN+EVAESLKV +ST+RLVMERSKRPISINQPVNDRSC
Sbjct: 351 GQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSC 410

Query: 374 LTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEI 433
           LTLQEI+PGPDNLTPENMVMRKLMKQELKRLLNTLSKREA ILSLYFGLNGEIPQSFEEI
Sbjct: 411 LTLQEIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEI 470

Query: 434 GKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GKSLNLSRETIR+ NIATLSKLKKT+VLDY+KDYLV
Sbjct: 471 GKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV 473

[Close]

BLAST of CSPI03G29520 vs. ExPASy TrEMBL
Match: A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)

HSP 1 Score: 723.8 bits (1867), Expect = 4.7e-205
Identity = 378/469 (80.60%), Postives = 403/469 (85.93%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN ISNDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PP EAA V                                +AVEAA EHVLVEA   S+D
Sbjct: 61  PPSEAAAV--------------------------------LAVEAAREHVLVEAGWLSKD 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           W  KN+EKME+SC GDG VAWKK+RRKRRKEVG  AEENW+ALSSGPLRPG+LS KEEAE
Sbjct: 121 WRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPLRPGHLSSKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEA  +E  KTRIMETQ+HEPTNKQLAIAMGTK G IDR+L RARESRDRLIRCY
Sbjct: 181 LCLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ II+AL
Sbjct: 241 SKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAE NNHLGIKLSR PT+KEVA+ LKV +ST+RLV ERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISIN+PVNDR CLTLQEIMPGPDNLTPENMV+RKLMKQELKRLL+TLSKREA IL+LYF
Sbjct: 361 PISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNG+IPQSFEEIGKSLNLSRETIRQTNIATL+KLKK+++LDYLKDYLV
Sbjct: 421 GLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 437

[Close]

BLAST of CSPI03G29520 vs. ExPASy TrEMBL
Match: A0A6J1FAN3 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442316 PE=3 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 1.0e-204
Identity = 376/469 (80.17%), Postives = 404/469 (86.14%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN I+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PP EAA V                                +AVEAA EHVLVEA   S+D
Sbjct: 61  PPSEAAAV--------------------------------LAVEAAREHVLVEAGWLSKD 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           WS KN+EKME+SC G G VAWKK+RRKRRKEVG  AEENW+ALS+GPLRPG+LS KEEAE
Sbjct: 121 WSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEA  +E +KTRIMETQEHEPTNKQLAIAMGTK G IDR+L RARESRDRLIRCY
Sbjct: 181 LCLCLKEAAQIEKIKTRIMETQEHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ II+AL
Sbjct: 241 SKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVA+IAE NNHLGIKLSR PT+KEVA+ LKV +ST+RLV ER+KR
Sbjct: 301 DKKSRLVRLPGHMGQMVAKIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERNKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDR CLTLQEIMPGPDNLTPENMV+RKLMKQELK+LLNTLSKREA IL+LYF
Sbjct: 361 PISINQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNG+IPQSFEEIGKSLNLSRETIRQTNIATL+KLKK+++LDYLKDYLV
Sbjct: 421 GLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 437

[Close]

BLAST of CSPI03G29520 vs. NCBI nr
Match: XP_004149725.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hypothetical protein Csa_000720 [Cucumis sativus])

HSP 1 Score: 833.9 bits (2153), Expect = 6.6e-238
Identity = 434/469 (92.54%), Postives = 435/469 (92.75%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PPPEAA                                  +AVEAAGEHVLVEAKGFSED
Sbjct: 61  PPPEAA---------------------------------VLAVEAAGEHVLVEAKGFSED 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE
Sbjct: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY
Sbjct: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL
Sbjct: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF
Sbjct: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV
Sbjct: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 436

[Close]

BLAST of CSPI03G29520 vs. NCBI nr
Match: KAA0048391.1 (RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa])

HSP 1 Score: 801.6 bits (2069), Expect = 3.6e-228
Identity = 415/469 (88.49%), Postives = 428/469 (91.26%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PPPEAA                                  +AVEAAGEHVLVEA+GFSED
Sbjct: 61  PPPEAA---------------------------------VLAVEAAGEHVLVEARGFSED 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           WSSKNVE+MEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE
Sbjct: 121 WSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEAVLLE VK+RIMETQEHEPTNKQLAIAMGTK GCIDRILCRARESRDRLIRCY
Sbjct: 181 LCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRILCRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLSTYAYWWIRQAIIRAL
Sbjct: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLSTYAYWWIRQAIIRAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTN+EVAESLKV +ST+RLVMERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRLVMERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDRSCLTLQEI+PGPDNLTPENMVMRKLMKQELKRLLNTLSKREA ILSLYF
Sbjct: 361 PISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNGEIPQSFEEIGKSLNLSRETIR+ NIATLSKLKKT+VLDY+KDYLV
Sbjct: 421 GLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV 436

[Close]

BLAST of CSPI03G29520 vs. NCBI nr
Match: XP_008461821.1 (PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo])

HSP 1 Score: 779.6 bits (2012), Expect = 1.5e-221
Identity = 402/456 (88.16%), Postives = 415/456 (91.01%), Query Frame = 0


Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAGVAVEAA 73
           SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLPPPPEAA       
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAA------- 110

Query: 74  GEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC 133
                                      +AVEAAGEHVLVEA+GFSEDWSSKNVE+MEESC
Sbjct: 111 --------------------------VLAVEAAGEHVLVEARGFSEDWSSKNVERMEESC 170

Query: 134 VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEN 193
           VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLE 
Sbjct: 171 VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEK 230

Query: 194 VKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQG 253
           VK+RIMETQEHEPTNKQLAIAMGTK GCIDRILCRARESRDRLIRCYSKLVISIAAPYQG
Sbjct: 231 VKSRIMETQEHEPTNKQLAIAMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQG 290

Query: 254 KGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHM 313
           KGLSLQDLTQEGNIGLLKGAERFEP+RGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHM
Sbjct: 291 KGLSLQDLTQEGNIGLLKGAERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHM 350

Query: 314 GQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSC 373
           GQMVARIAEENNHLGIKLSRPPTN+EVAESLKV +ST+RLVMERSKRPISINQPVNDRSC
Sbjct: 351 GQMVARIAEENNHLGIKLSRPPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSC 410

Query: 374 LTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEI 433
           LTLQEI+PGPDNLTPENMVMRKLMKQELKRLLNTLSKREA ILSLYFGLNGEIPQSFEEI
Sbjct: 411 LTLQEIIPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEI 470

Query: 434 GKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GKSLNLSRETIR+ NIATLSKLKKT+VLDY+KDYLV
Sbjct: 471 GKSLNLSRETIRRINIATLSKLKKTNVLDYIKDYLV 473

[Close]

BLAST of CSPI03G29520 vs. NCBI nr
Match: XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])

HSP 1 Score: 766.1 bits (1977), Expect = 1.7e-217
Identity = 395/469 (84.22%), Postives = 413/469 (88.06%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N I+NDTLTLP
Sbjct: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PPPEAA                                  + VEAA EHVLV+A+GFSED
Sbjct: 61  PPPEAA---------------------------------VLTVEAAREHVLVDARGFSED 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           WS KN+E+ME SC GDGTVAWKKKRRKRRKEVG+KAEENW ALSSGPLRPGYLSPKEEAE
Sbjct: 121 WSCKNLERMEGSCGGDGTVAWKKKRRKRRKEVGLKAEENWAALSSGPLRPGYLSPKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEA  LE  KTRIMETQEHEPTN+QLAIA+GTK G IDRILCRARESRDRLIRCY
Sbjct: 181 LCLCLKEAAQLEEAKTRIMETQEHEPTNRQLAIALGTKLGSIDRILCRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL
Sbjct: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAE NNHLG+KLSRPPT+KEVAESLKV +ST+RLV ERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEANNHLGLKLSRPPTHKEVAESLKVRVSTVRLVTERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDR CLTLQEIMPGPDNLTPENMVMRKLMKQE+KRLLNTLSKREA ILSLYF
Sbjct: 361 PISINQPVNDRGCLTLQEIMPGPDNLTPENMVMRKLMKQEVKRLLNTLSKREAHILSLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNGEIP+SFEEIGKSLNLSRETIRQ N+ATLSKLK TD+LDYLK+YLV
Sbjct: 421 GLNGEIPRSFEEIGKSLNLSRETIRQINVATLSKLKNTDILDYLKEYLV 436

[Close]

BLAST of CSPI03G29520 vs. NCBI nr
Match: XP_023528248.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 724.9 bits (1870), Expect = 4.3e-205
Identity = 377/469 (80.38%), Postives = 404/469 (86.14%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN I+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPPEAAGVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSED 120
           PP EAA V                                +AVEAA EHVLVEA   S+D
Sbjct: 61  PPSEAAAV--------------------------------LAVEAAREHVLVEAGWLSKD 120

Query: 121 WSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAE 180
           W  KN+EKME+SC GDG VAWKK+RRKRRKEVG  AEENW+ALS+GPLRPG+LS KEEAE
Sbjct: 121 WRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAE 180

Query: 181 LCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCY 240
           LCLCLKEA  +E +KTRIMETQ+HEPTNKQLAIAMGTK G IDR+L RARESRDRLIRCY
Sbjct: 181 LCLCLKEAAQIEKIKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCY 240

Query: 241 SKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRAL 300
           SKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ II+AL
Sbjct: 241 SKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQAL 300

Query: 301 DKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKR 360
           DKKSRLVRLPGHMGQMVARIAE NNHLGIKLSR PT+KEVA+ LKV +ST+RLV ERSKR
Sbjct: 301 DKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKR 360

Query: 361 PISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYF 420
           PISINQPVNDR CLTLQEIMPGPDNLTPENMV+RKLMKQELK+LLNTLSKREA IL+LYF
Sbjct: 361 PISINQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYF 420

Query: 421 GLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           GLNG+IPQSFEEIGKSLNLSRETIRQTNIATL+KLKK+++LDYLKDYLV
Sbjct: 421 GLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 437

[Close]

BLAST of CSPI03G29520 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-87
Identity = 171/345 (49.57%), Postives = 238/345 (68.99%), Query Frame = 0


Query: 137 GTVAWKKKRRKRRKEV-------------GVKAEENWIALS-SGPLRPGYLSPKEEAELC 196
           G  + K+++R+RR+ V             GV+AE   I++   G  R G+LS  EE +LC
Sbjct: 73  GIQSEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLC 132

Query: 197 LCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSK 256
           L LKE   LEN+ T +   +E+E  +  LA   G K    + ILCR +E+R+++ RCY +
Sbjct: 133 LYLKEGAKLENLGTSV---EENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRR 192

Query: 257 LVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDK 316
           LV+SIA  YQGKGL+LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+QAI+RA+  
Sbjct: 193 LVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAH 252

Query: 317 KSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPI 376
           KSRLV+LPG M ++ A++AE +N L  KL R P+ +E+AE L +++S +RL +ERS+ P+
Sbjct: 253 KSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPV 312

Query: 377 SINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGL 436
           S+++  +    +TLQEI+ GPD   PE MV R+ MK E+++LL +L+ RE+R+L LYFGL
Sbjct: 313 SLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGL 372

Query: 437 NGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDY 468
           NGE P SFEEIGKSL LSRE +RQ N   L KL+    ++ LK Y
Sbjct: 373 NGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of CSPI03G29520 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-49
Identity = 120/390 (30.77%), Postives = 212/390 (54.36%), Query Frame = 0


Query: 80  EAKGFSEDWSSKNVEKMEESCVAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTV 139
           E+ G  E    + VE +EE      A       E K       +K +EK         T 
Sbjct: 186 ESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA----RRAKGLEKTASGIPSVKTG 245

Query: 140 AWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIM 199
           +  KK+R   +EV       ++ +++   +   L+ +EE EL   +++ + LE ++T + 
Sbjct: 246 SSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDLLKLERLQTELT 305

Query: 200 ETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQ 259
           E    +PT  Q A A G     + + +      +D++I+   +LVISIA  YQG G++LQ
Sbjct: 306 ERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 365

Query: 260 DLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVAR 319
           DL QEG  GL++GAE+F+  +G K STYA+WWI+QA+ ++L  +SR++RLP HM +   R
Sbjct: 366 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 425

Query: 320 IAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEI 379
           + E    L  +  + P N+E+AE+  + +  +  V+   K P S++Q +     L   E+
Sbjct: 426 VKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV 485

Query: 380 MPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNL 439
           +  P+ +T E++++++ M+Q+L ++L++L  RE +++   FG+     ++ +EIG+ + +
Sbjct: 486 IADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 545

Query: 440 SRETIRQTNIATLSKLKKTDVLDYLKDYLV 470
           SRE +RQ   +   KLK     ++L+ YLV
Sbjct: 546 SRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CSPI03G29520 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-49
Identity = 114/335 (34.03%), Postives = 187/335 (55.82%), Query Frame = 0


Query: 123 SKNVEKMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELC 182
           +KN    + + V D     +K   K++ + G   ++       GP     L+ KEEAEL 
Sbjct: 198 AKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELI 257

Query: 183 LCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSK 242
             ++  + LE VKT++      EPT  + A AMG  S  +   + R R SR++LI    +
Sbjct: 258 SHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLR 317

Query: 243 LVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDK 302
           LV+ IA  YQ +GL+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ +
Sbjct: 318 LVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQ 377

Query: 303 KSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPI 362
            SR +RLP ++  ++ +++E       + +  P+ +E+A  + V    +  ++  ++ P+
Sbjct: 378 NSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPL 437

Query: 363 SINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGL 422
           S+ QP+      T QEI P     TP   V ++LM+  ++ LLN LS +E RI+ L FG+
Sbjct: 438 SMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGI 497

Query: 423 NGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKK 458
           +G   +S  EIG+   LS+E +RQ     L +LK+
Sbjct: 498 DGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of CSPI03G29520 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-35
Identity = 118/417 (28.30%), Postives = 195/417 (46.76%), Query Frame = 0


Query: 79  VEAKGFSEDWSSKNVEK-MEESCVAVEAAGEH-----VLVEAKGFSEDWSSKNVEKMEES 138
           V+     + W     +K +EE C   +    H     +L++     + W+    + +   
Sbjct: 78  VDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSE 137

Query: 139 CVGDGTVAWKK-------KRRKRRKEVGVKAEENWI------ALSSGPLRPGY------- 198
             G GT+  KK           R++ +G K + N         +SSG    GY       
Sbjct: 138 YPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISE 197

Query: 199 --LSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRAR 258
             LS  E   L   +K  + L++ K+R+ +    EP+++QLA+++      +   L    
Sbjct: 198 DVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECH 257

Query: 259 ESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYW 318
            +R++L     +LV+SIA  Y   G  + DL Q G IGLL+G E+F+ ++G ++STY YW
Sbjct: 258 LAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYW 317

Query: 319 WIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLST 378
           WIRQ + RAL   SR +RLP H+ + +  I      L  K   P  ++ +AESL +    
Sbjct: 318 WIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDR-IAESLNMSQKK 377

Query: 379 IRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLT----------PENMVMRKLMKQE 438
           +R   E   +  S+     DR        +PG  + +          P +      +K+E
Sbjct: 378 VRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEE 437

Query: 439 LKRLLN-TLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLK 457
           + +L++ TL +RE  I+ LY+GL+ E   ++E+I K + LSRE +RQ  +  L KLK
Sbjct: 438 VSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLK 487

[Close]

BLAST of CSPI03G29520 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-31
Identity = 93/306 (30.39%), Postives = 157/306 (51.31%), Query Frame = 0


Query: 170 PGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCRA 229
           P  LS  E A L   ++    L  VK  + ++   EP   ++A  +   +G + + +   
Sbjct: 217 PPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIG 276

Query: 230 RESRDRLIRCYSKLVISIAAPYQGK---GLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 289
           R +R++LI+   +LV+ +   Y  +   G   QDL Q G  GL+   +RFEP R  +LST
Sbjct: 277 RAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLST 336

Query: 290 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKV 349
           Y  +WIR AIIR++   S   R+P  +  +   I +    L  ++ RPPT  EV E LK+
Sbjct: 337 YGLFWIRHAIIRSM-TTSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKI 396

Query: 350 HLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPG---PDNLTPENMVMRKLMKQELKR 409
                R V+  +K  +S+    N +  +T +E + G    D +   N     L++  L  
Sbjct: 397 TPERYREVLRAAKPVLSL----NSKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDD 456

Query: 410 LLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDY 469
           +L++L  +E+ ++   +GL+G+  ++  EI  +LN+SRE +R+  +  L KLK    +DY
Sbjct: 457 VLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDY 516

The following BLAST results are available for this feature:

BLAST of CSPI03G29520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZSL6	1.9e-86	49.57	RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P38023	6.4e-50	34.12	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P26683	9.2e-49	32.74	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
O22056	2.0e-48	30.77	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
Q9LD95	2.7e-48	34.03	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CSPI03G29520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9T0	3.2e-238	92.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1	[more]
A0A5D3BP27	1.8e-228	88.49	RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFL7	7.2e-222	88.16	RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1J3P0	4.7e-205	80.60	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FAN3	1.0e-204	80.17	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CSPI03G29520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149725.1	6.6e-238	92.54	RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hy...	[more]
KAA0048391.1	3.6e-228	88.49	RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA poly...	[more]
XP_008461821.1	1.5e-221	88.16	PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo]	[more]
XP_038906215.1	1.7e-217	84.22	RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida]	[more]
XP_023528248.1	4.3e-205	80.38	RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI03G29520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13730.1	1.3e-87	49.57	sigma factor 4	[more]
AT1G08540.1	1.5e-49	30.77	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.9e-49	34.03	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	5.9e-35	28.30	sigma factor A	[more]
AT5G24120.1	1.0e-31	30.39	sigma factor E	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 394..414
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 188..308 e-value: 3.1E-35 score: 124.3
None	No IPR available	PANTHER	PTHR30603:SF47	RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC	coord: 4..468
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 4..468
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 398..456 e-value: 2.24287E-7 score: 45.5582
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 408..420 score: 37.87 coord: 444..455 score: 41.29 coord: 284..292 score: 74.91 coord: 429..444 score: 39.64 coord: 260..273 score: 58.71
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 404..457 e-value: 3.6E-11 score: 42.4
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 236..305 e-value: 2.1E-20 score: 72.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 309..384 e-value: 1.7E-8 score: 36.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 387..465 e-value: 2.5E-19 score: 70.9
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 232..457 e-value: 6.5E-31 score: 105.2
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 319..391 e-value: 1.6E-10 score: 41.0
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 309..380
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 367..458
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 170..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G29520.1	CSPI03G29520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity