CSPI03G28980 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G28980
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionABC transporter G family member 41
LocationChr3: 26517980 .. 26519561 (+)
RNA-Seq ExpressionCSPI03G28980
SyntenyCSPI03G28980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGGACGGGCGGTTGATGTCAATGATCCTTGAGAACTTTCTTCCAAAATGCTAAATAAGTCAGTCTAAATGGTTTATGAAATCTTTCATTTGCACAAACACTCTACTTTCCACTTGACCTTTTAAATTCGGAAGTACAAAGAAGGGGACTTAGCTAAAATCTCTTTTTTCTTGACGAATGATATAATAGAACAATCAAAAGCTTAAATTGATAAATAATGGTAAAATTTGTATGTATATACATATATATATTTGTATTCATCACTAAACTAAAAAACTTAAGTTGACTAATTAAGATGGAATCATTTCATTTCTTGTAATTCTTTAAACTAAGACAAGGAAACTTTTCTTCATTTCAAAGTTAGAGAAGCAAAAGACTGAACATGGACTAAAGTTTTGTTTTTCTCCTGCTTAATTACTTTATCAAGAAATATTACTTGTAAAGACCATGAAGTAAGATGCTATCATTTGCTAGATATCTATGAACAAATCGATGTACATTCTTCACAAATAACTGTTGAAGAATCTCTGTTCTTCTCTGCTTGGCTCTGTTTGTCACCTGAAATTGACTCAAAAACAAAAGCAGTATGTTTTCCTGTTGTTTTCTTCAAATGATAAAATTTAAATGGCCATTGATTAACTCACCAAGGATAACTTGTAATTTAGATTGACATTAGTTTCTTGTTTTATAGCAATCTGTAAATGAAGTCCTTGAGACCACTGAACTTAATAGCATAATGGATTCCTTAGTTGGGATACCTGGTGTCAGTGGCCTATCAACTTAGCAACGTAAACTTTTAATCATAGTTGTGGAGCTTGTTTCCAACCCTTCTATCATTTTCATGGATGAGCCTACCACTGGTTTAGATTGCAAGGCAGCTGCAATTGTCATGCGAGCCATCAAGAATGTGGCTGATACTGGAAGAACAATAGTTTGTACCATCCATCAGCCAAGTATTGACATCTTTGAATTTTTTGATTAGGTAAAACTTTTACTCTTTGCTGTAATGCTTAGTTCTGACATGAGGCATTTCTAGAAATTTAAAACTATGGTAAATGACAAACAAATTTGTTTAGTTTATGTTGACAAGATGGGAAGCACAATATTTTTTTTTAATTTTCTTTTACAATCTTGTGGATTATTTCTGAGTTTGTTTACAAAAATGATTTATGTTTTTGTTTCGAAATTGTTTACAACAATTATTATCAAGTAACATGATTTTATTCAATGAATGAAGTGTCTTATCGGTAAACAAAATGGAAAGAAAAAAAGAAGAAAGGATCTGAAAATCTTTCTGTTCAGAAATTAATTTAGTAGATGCACATACTTATGATTTAAGTTTGATCTCTGTTAAATGGTTCGTCTCTAGACATACATTTAGAAACACTGATCAAATGGCCCCTTCTCATATGCTTAAATTTGTTCTTCGGTAGGCATACAACCACAATGGAATGTACAAGGCCATTAGAGATTCTCAAGAAGTTTATATTTATCCCACTTCAGTGTTATTCCACTTCAGTTTTATTCAGGTTAGTTCCAAC

mRNA sequence

ATGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGGACGGGCGATATCTATGAACAAATCGATGTACATTCTTCACAAATAACTGTTGAAGAATCTCTGTTCTTCTCTGCTTGGCTCTGTTTGTCACCTGAAATTGACTCAAAAACAAAAGCAGTATGTTTTCCTGTTGTTTTCTTCAAATGATAAAATTTAAATGGCCATTGATTAACTCACCAAGGATAACTTGTAATTTAGATTGACATTAGTTTCTTGTTTTATAGCAATCTGTAAATGAAGTCCTTGAGACCACTGAACTTAATAGCATAATGGATTCCTTAGTTGGGATACCTGGTGTCAGTGGCCTATCAACTTAGCAACGTAAACTTTTAATCATAGTTGTGGAGCTTGTTTCCAACCCTTCTATCATTTTCATGGATGAGCCTACCACTGGTTTAGATTGCAAGGCAGCTGCAATTGTCATGCGAGCCATCAAGAATGTGGCTGATACTGGAAGAACAATAGTTTGTACCATCCATCAGCCAAGTATTGACATCTTTGAATTTTTTGATTAGGCATACAACCACAATGGAATGTACAAGGCCATTAGAGATTCTCAAGAAGTTTATATTTATCCCACTTCAGTGTTATTCCACTTCAGTTTTATTCAGGTTAGTTCCAAC

Coding sequence (CDS)

ATGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGGACGGGCGATATCTATGAACAAATCGATGTACATTCTTCACAAATAACTGTTGAAGAATCTCTGTTCTTCTCTGCTTGGCTCTGTTTGTCACCTGAAATTGACTCAAAAACAAAAGCAGTATGTTTTCCTGTTGTTTTCTTCAAATGA

Protein sequence

MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKAVCFPVVFFK*
Homology
[Close]
BLAST of CSPI03G28980 vs. ExPASy Swiss-Prot
Match: Q5W274 (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-07
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS QITVEES+ FSAWL L P+IDSKTK
Sbjct: 938 EQTDIHSPQITVEESVIFSAWLRLHPQIDSKTK 970

[Close]
BLAST of CSPI03G28980 vs. ExPASy Swiss-Prot
Match: Q9LFH0 (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEES+ +SAWL L+PEID+ TK
Sbjct: 941 EQTDIHSPNITVEESVIYSAWLRLAPEIDATTK 973

[Close]
BLAST of CSPI03G28980 vs. ExPASy Swiss-Prot
Match: Q9ZUT8 (ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-05
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 8   LKANESIGTGDIY-EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           LK  E+      Y EQ D+HS  ITVEESL +SAWL L PEI+ +TK
Sbjct: 890 LKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTK 936

[Close]
BLAST of CSPI03G28980 vs. ExPASy Swiss-Prot
Match: Q8GU83 (ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG41 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-05
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ DVHS QITVEES+ +SAWL L  E+DSKT+
Sbjct: 929 EQTDVHSPQITVEESVAYSAWLRLPTEVDSKTR 961

[Close]
BLAST of CSPI03G28980 vs. ExPASy Swiss-Prot
Match: Q8GZ52 (ABC transporter G family member 30 OS=Arabidopsis thaliana OX=3702 GN=ABCG30 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-05
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEESL +SAWL L   IDSKTK
Sbjct: 891 EQFDIHSPNITVEESLKYSAWLRLPYNIDSKTK 923

[Close]
BLAST of CSPI03G28980 vs. ExPASy TrEMBL
Match: A0A0A0LCW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653390 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
          MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA
Sbjct: 1  MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 54

[Close]
BLAST of CSPI03G28980 vs. ExPASy TrEMBL
Match: A0A5D3DPP0 (Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006010 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 882 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 915

[Close]
BLAST of CSPI03G28980 vs. ExPASy TrEMBL
Match: A0A5A7TNN3 (Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00010 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 939 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 972

[Close]
BLAST of CSPI03G28980 vs. ExPASy TrEMBL
Match: A0A0A0LEL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813820 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 919 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 952

[Close]
BLAST of CSPI03G28980 vs. ExPASy TrEMBL
Match: A0A1S3B7F0 (pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486827 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 925 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 958

[Close]
BLAST of CSPI03G28980 vs. NCBI nr
Match: XP_031738520.1 (pleiotropic drug resistance protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 918 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 951

[Close]
BLAST of CSPI03G28980 vs. NCBI nr
Match: XP_004136753.2 (pleiotropic drug resistance protein 3 isoform X1 [Cucumis sativus] >KGN59364.1 hypothetical protein Csa_001402 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 919 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 952

[Close]
BLAST of CSPI03G28980 vs. NCBI nr
Match: XP_008443153.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 925 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 958

[Close]
BLAST of CSPI03G28980 vs. NCBI nr
Match: KAA0043676.1 (pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 939 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 972

[Close]
BLAST of CSPI03G28980 vs. NCBI nr
Match: XP_031738521.1 (pleiotropic drug resistance protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 771 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 804

[Close]
BLAST of CSPI03G28980 vs. TAIR 10
Match: AT3G53480.1 (pleiotropic drug resistance 9 )

HSP 1 Score: 50.1 bits (118), Expect = 7.9e-07
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEES+ +SAWL L+PEID+ TK
Sbjct: 941 EQTDIHSPNITVEESVIYSAWLRLAPEIDATTK 973

[Close]
BLAST of CSPI03G28980 vs. TAIR 10
Match: AT2G37280.1 (pleiotropic drug resistance 5 )

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 8   LKANESIGTGDIY-EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           LK  E+      Y EQ D+HS  ITVEESL +SAWL L PEI+ +TK
Sbjct: 890 LKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTK 936

[Close]
BLAST of CSPI03G28980 vs. TAIR 10
Match: AT4G15230.1 (pleiotropic drug resistance 2 )

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-06
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEESL +SAWL L   IDSKTK
Sbjct: 891 EQFDIHSPNITVEESLKYSAWLRLPYNIDSKTK 923

[Close]
BLAST of CSPI03G28980 vs. TAIR 10
Match: AT4G15215.1 (pleiotropic drug resistance 13 )

HSP 1 Score: 46.2 bits (108), Expect = 1.1e-05
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEESL +SAWL L   ID+KTK
Sbjct: 881 EQFDIHSPNITVEESLKYSAWLRLPYNIDAKTK 913

[Close]
BLAST of CSPI03G28980 vs. TAIR 10
Match: AT2G36380.1 (pleiotropic drug resistance 6 )

HSP 1 Score: 45.4 bits (106), Expect = 1.9e-05
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  +TV ESL +SAWL LS +ID+KT+
Sbjct: 943 EQNDIHSPHVTVYESLIYSAWLRLSADIDTKTR 975

The following BLAST results are available for this feature:
BLAST of CSPI03G28980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5W2744.5e-0775.76Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 ... [more]
Q9LFH01.1e-0566.67ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=... [more]
Q9ZUT81.4e-0555.32ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=... [more]
Q8GU831.4e-0569.70ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=A... [more]
Q8GZ527.2e-0569.70ABC transporter G family member 30 OS=Arabidopsis thaliana OX=3702 GN=ABCG30 PE=... [more]
BLAST of CSPI03G28980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCW72.0e-21100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653390 PE=4 SV=1[more]
A0A5D3DPP02.1e-0791.18Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuw... [more]
A0A5A7TNN32.1e-0791.18Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuw... [more]
A0A0A0LEL92.1e-0791.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813820 PE=3 SV=1[more]
A0A1S3B7F02.1e-0791.18pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
BLAST of CSPI03G28980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031738520.14.3e-0791.18pleiotropic drug resistance protein 3 isoform X2 [Cucumis sativus][more]
XP_004136753.24.3e-0791.18pleiotropic drug resistance protein 3 isoform X1 [Cucumis sativus] >KGN59364.1 h... [more]
XP_008443153.14.3e-0791.18PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo][more]
KAA0043676.14.3e-0791.18pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa][more]
XP_031738521.14.3e-0791.18pleiotropic drug resistance protein 3 isoform X3 [Cucumis sativus][more]
BLAST of CSPI03G28980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53480.17.9e-0766.67pleiotropic drug resistance 9 [more]
AT2G37280.11.0e-0655.32pleiotropic drug resistance 5 [more]
AT4G15230.15.1e-0669.70pleiotropic drug resistance 2 [more]
AT4G15215.11.1e-0566.67pleiotropic drug resistance 13 [more]
AT2G36380.11.9e-0560.61pleiotropic drug resistance 6 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G28980.1CSPI03G28980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0140359 ABC-type transporter activity
molecular_function GO:0005524 ATP binding