CSPI03G28420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G28420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr3: 26014879 .. 26015894 (-)
RNA-Seq Expression	CSPI03G28420
Synteny	CSPI03G28420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCATAAACAATTCCTTTGGAGATTCTTTCCTTTCTCCACTCCCTTAATGTTTCACATGCTTCCTTTTTCCAGTAGACAATCCATAGAGTCTTTTGCCACTTTGGGATCGGTCTCATTGAGCTCATCACAAGTTTTGCCAGCATATTCTTCGAATTTTCTTTTAGAATCTGTAGACTATGTTAAACTGGTTCAATCAGCTACTAAAACTGGGAAGTTGAACCATGGCAAACTCGTTCATTCCCATATGATTAGAACTTCTTTCAGGCTCTGTCTATTTTTGCAGAACAATCTTCTTAACGTGTACTGCAAATGTGGGGATACACGTTCTGCTGACAAATTGTTTGATAAAATGTCAAAATCAAACATTGTAACTTACAACTCTTTGATTTCTGGCCCTTGACAAGGTCATGATTTTGTTTGATAAAGCAAGAAGACTTGGTTTGAAACTTGATAAGTACAATTGTGCAGGAGCTCTTACAGCATGTAGTCAAAGGAGACTGACTTGATTATTTGAAAGAGTTCTTATTCAATCAAATCTATCCATGCATAAAGAGGACTAGAAAATTAGTGGTGACAATGCATAATATCATCTTTCATTAGTCGATCAGTAGTTAATTATACTAATCCAAATCCAAAAATTAGCTTCTAGATTTATGTAATTCAAAAGCAAAAGAAATAGAAATAATTAGACAATGAATTAAACCGATAAAATTGATAATTGATTCAAACATATTGCAATGTTTTTAATTCTCAACTTTTGTAAATTCGATTTTAAATAGGAAGCAAACGTAAACCGAAGCGTTCTAATAATATATTATTTATTTACTCTAAAAGTTAAAAGGGAATTCTCCTTCCTTTTGATTTTAGGTTACACAGCTTGGTGAAGACTCATATTGGGGAGCCATTTGTGAAACTGAGAATTCCTATTTCTTTCACTTCTCTCGGAATTCCATTGATTTGTGCACCAGTAAAGTCCTCCAGATCAGTCTCGCCACTATATTAGGCTAA

mRNA sequence

ATGTTGCCTCATAAACAATTCCTTTGGAGATTCTTTCCTTTCTCCACTCCCTTAATGTTTCACATGCTTCCTTTTTCCAGTAGACAATCCATAGAGTCTTTTGCCACTTTGGGATCGGTCTCATTGAGCTCATCACAAGTTTTGCCAGCATATTCTTCGAATTTTCTTTTAGAATCTGTAGACTATGTTAAACTGGTTCAATCAGCTACTAAAACTGGGAAGTTGAACCATGGCAAACTCGTTCATTCCCATATGATTAGAACTTCTTTCAGGCTCTGTCTATTTTTGCAGAACAATCTTCTTAACGTGTACTGCAAATGTGGGGATACACGTTCTGCTGACAAATTGTTTGATAAAATGTCAAAATCAAACATTGTTACACAGCTTGGTGAAGACTCATATTGGGGAGCCATTTGTGAAACTGAGAATTCCTATTTCTTTCACTTCTCTCGGAATTCCATTGATTTGTGCACCAGTAAAGTCCTCCAGATCAGTCTCGCCACTATATTAGGCTAA

Coding sequence (CDS)

ATGTTGCCTCATAAACAATTCCTTTGGAGATTCTTTCCTTTCTCCACTCCCTTAATGTTTCACATGCTTCCTTTTTCCAGTAGACAATCCATAGAGTCTTTTGCCACTTTGGGATCGGTCTCATTGAGCTCATCACAAGTTTTGCCAGCATATTCTTCGAATTTTCTTTTAGAATCTGTAGACTATGTTAAACTGGTTCAATCAGCTACTAAAACTGGGAAGTTGAACCATGGCAAACTCGTTCATTCCCATATGATTAGAACTTCTTTCAGGCTCTGTCTATTTTTGCAGAACAATCTTCTTAACGTGTACTGCAAATGTGGGGATACACGTTCTGCTGACAAATTGTTTGATAAAATGTCAAAATCAAACATTGTTACACAGCTTGGTGAAGACTCATATTGGGGAGCCATTTGTGAAACTGAGAATTCCTATTTCTTTCACTTCTCTCGGAATTCCATTGATTTGTGCACCAGTAAAGTCCTCCAGATCAGTCTCGCCACTATATTAGGCTAA

Protein sequence

MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVTQLGEDSYWGAICETENSYFFHFSRNSIDLCTSKVLQISLATILG*

Homology

[Close]

BLAST of CSPI03G28420 vs. ExPASy Swiss-Prot
Match: Q9LRV9 (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E89 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-12
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAY--------SSNFLLESVDYVKLVQSATKTG 81
           +L F ++    + A    V+L + +V   Y          N  L+S  Y  L Q+A K+G
Sbjct: 2   LLQFRAKTFFNNIAQDSLVTLITKRVGLGYRFLSSLCQPKNTALDSEGYKILFQTAAKSG 61

Query: 82  KLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
            +  GKL H HMI++S   CL+L NNLLN+YCKC +   A +LFD+M + NI++
Sbjct: 62  SVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIIS 115

[Close]

BLAST of CSPI03G28420 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.4e-07
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           Y  L  + + TG L  GK VH++MI++  +L  F  N LL++Y K G    A K+FD+++
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324

Query: 122 KSNIVT 128
           K ++V+
Sbjct: 325 KRDVVS 330

[Close]

BLAST of CSPI03G28420 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 7.1e-07
Identity = 32/98 (32.65%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 31  IESFATLGSVSLSSSQVLPAYSSNFLLE--SVDYVKLVQSATKTGKLNHGKLVHSHMIRT 90
           I  +A +G+ S+S+  +      + L+E  +  Y  L+++ T    +  G+ +HS +IR+
Sbjct: 92  IRGYAEIGN-SISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 151

Query: 91  SFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIV 127
            F   +++QN+LL++Y  CGD  SA K+FDKM + ++V
Sbjct: 152 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

[Close]

BLAST of CSPI03G28420 vs. ExPASy Swiss-Prot
Match: Q9ZUT4 (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 21/66 (31.82%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           +  L+ + T +G L  G+ VH   +    +  L + N+L+++YCKCGD + A ++FD+ S
Sbjct: 224 FTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFS 283

Query: 122 KSNIVT 128
             ++V+
Sbjct: 284 NKDVVS 289

[Close]

BLAST of CSPI03G28420 vs. ExPASy Swiss-Prot
Match: Q9LYU9 (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKL 116
           + S  Y  L ++  +   L+HG+L+H  M        + LQN +L +YC+C     ADKL
Sbjct: 81  VSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKL 140

Query: 117 FDKMSKSNIVTQ 129
           FD+MS+ N V++
Sbjct: 141 FDEMSELNAVSR 152

[Close]

BLAST of CSPI03G28420 vs. ExPASy TrEMBL
Match: A0A0A0LBY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645920 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.0e-60
Identity = 128/163 (78.53%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV
Sbjct: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKL                                NNLLNVYCKCGDTRSA KLFD M
Sbjct: 61  DYVKL--------------------------------NNLLNVYCKCGDTRSAGKLFDTM 120

Query: 121 SKSNIVTQLGEDSYWGAICETENSYFFHFSRNSIDLCTSKVLQ 164
           SKSNIVTQLG DSYWGAICETENSYFFHFSRNSIDLCTSKVLQ
Sbjct: 121 SKSNIVTQLGGDSYWGAICETENSYFFHFSRNSIDLCTSKVLQ 131

[Close]

BLAST of CSPI03G28420 vs. ExPASy TrEMBL
Match: A0A0A0KSU3 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G648690 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.4e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP KQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTGKLNHGKLVHSHMI+TSFR CLFLQNNLLN+YCKCGDTRSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. ExPASy TrEMBL
Match: A0A1S3CAH5 (pentatricopeptide repeat-containing protein At3g13880 OS=Cucumis melo OX=3656 GN=LOC103498661 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.6e-54
Identity = 112/127 (88.19%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP K+FLWRF P STPLMFHMLPF SR+SIESFATL SVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKRFLWRFIPLSTPLMFHMLPFFSRESIESFATLESVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTG LN GKLVHSHMI+TSFR CLFLQNNLLN+YCKCGD RSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGNLNQGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDIRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. ExPASy TrEMBL
Match: A0A5D3BP01 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00900 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.7e-43
Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESVDYVKLVQSATKTGKLNHGKLV 81
           MLPF SR+SIESFATL SVSLSSSQV PAYSS FLLESVDYVKLVQSATKTG LN GKLV
Sbjct: 1   MLPFFSRESIESFATLESVSLSSSQVFPAYSSTFLLESVDYVKLVQSATKTGNLNQGKLV 60

Query: 82  HSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
           HSHMI+TSFR CLFLQNNLLN+YCKCGD RSADKLFDKMSKSNIVT
Sbjct: 61  HSHMIKTSFRPCLFLQNNLLNMYCKCGDIRSADKLFDKMSKSNIVT 106

[Close]

BLAST of CSPI03G28420 vs. ExPASy TrEMBL
Match: A0A6J1I7D1 (pentatricopeptide repeat-containing protein At3g13880 OS=Cucurbita maxima OX=3661 GN=LOC111471935 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 90/127 (70.87%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP K F+WRF   S   MF MLP  SRQ IESFAT    SL  SQV P YS  FLLES 
Sbjct: 1   MLPQKPFVWRFSFLSCTSMFPMLPVFSRQRIESFATSELNSLGPSQVCPPYSLTFLLESA 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTG LNHGKLVH+HMI+T F+ CLFLQNNLLN+YCKCGD  SADKLF+KM
Sbjct: 61  DYVKLVQSATKTGNLNHGKLVHAHMIKTFFKPCLFLQNNLLNMYCKCGDIHSADKLFNKM 120

Query: 121 SKSNIVT 128
            K NI+T
Sbjct: 121 PKPNIIT 127

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: XP_031741772.1 (pentatricopeptide repeat-containing protein At3g13880 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 7.0e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP KQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTGKLNHGKLVHSHMI+TSFR CLFLQNNLLN+YCKCGDTRSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: XP_008459568.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g13880 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 7.5e-54
Identity = 112/127 (88.19%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP K+FLWRF P STPLMFHMLPF SR+SIESFATL SVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKRFLWRFIPLSTPLMFHMLPFFSRESIESFATLESVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTG LN GKLVHSHMI+TSFR CLFLQNNLLN+YCKCGD RSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGNLNQGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDIRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: XP_038889992.1 (pentatricopeptide repeat-containing protein At3g13880 [Benincasa hispida] >XP_038889993.1 pentatricopeptide repeat-containing protein At3g13880 [Benincasa hispida] >XP_038889994.1 pentatricopeptide repeat-containing protein At3g13880 [Benincasa hispida] >XP_038889995.1 pentatricopeptide repeat-containing protein At3g13880 [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 4.0e-47
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP K FLWRF P STP +F MLP SSRQ IESFATL  +SLSSSQV P++S  FLLES 
Sbjct: 17  MLPQKPFLWRFNPLSTPFVFPMLPVSSRQPIESFATLELISLSSSQVSPSHSLAFLLESA 76

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSA KTG LNHGKLVHSHMI+TSFR CLFLQNNLLN+YCKCGDT SADKLFDKM
Sbjct: 77  DYVKLVQSAIKTGNLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTHSADKLFDKM 136

Query: 121 SKSNIVT 128
           SK NI+T
Sbjct: 137 SKPNIIT 143

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: KAE8648993.1 (hypothetical protein Csa_009190 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 5.2e-47
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESVDYVKLVQSATKTGKLNHGKLV 81
           MLPFSSRQSIESFATLGSVSLSSSQV PAYSS FLLESVDYVKLVQSATKTGKLNHGKLV
Sbjct: 1   MLPFSSRQSIESFATLGSVSLSSSQVFPAYSSTFLLESVDYVKLVQSATKTGKLNHGKLV 60

Query: 82  HSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
           HSHMI+TSFR CLFLQNNLLN+YCKCGDTRSADKLFDKMSKSNIVT
Sbjct: 61  HSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVT 106

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: KAA0039298.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK00482.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-43
Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESVDYVKLVQSATKTGKLNHGKLV 81
           MLPF SR+SIESFATL SVSLSSSQV PAYSS FLLESVDYVKLVQSATKTG LN GKLV
Sbjct: 1   MLPFFSRESIESFATLESVSLSSSQVFPAYSSTFLLESVDYVKLVQSATKTGNLNQGKLV 60

Query: 82  HSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
           HSHMI+TSFR CLFLQNNLLN+YCKCGD RSADKLFDKMSKSNIVT
Sbjct: 61  HSHMIKTSFRPCLFLQNNLLNMYCKCGDIRSADKLFDKMSKSNIVT 106

[Close]

BLAST of CSPI03G28420 vs. TAIR 10
Match: AT3G13880.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-13
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAY--------SSNFLLESVDYVKLVQSATKTG 81
           +L F ++    + A    V+L + +V   Y          N  L+S  Y  L Q+A K+G
Sbjct: 2   LLQFRAKTFFNNIAQDSLVTLITKRVGLGYRFLSSLCQPKNTALDSEGYKILFQTAAKSG 61

Query: 82  KLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
            +  GKL H HMI++S   CL+L NNLLN+YCKC +   A +LFD+M + NI++
Sbjct: 62  SVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIIS 115

[Close]

BLAST of CSPI03G28420 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           Y  L  + + TG L  GK VH++MI++  +L  F  N LL++Y K G    A K+FD+++
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324

Query: 122 KSNIVT 128
           K ++V+
Sbjct: 325 KRDVVS 330

[Close]

BLAST of CSPI03G28420 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-08
Identity = 32/98 (32.65%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 31  IESFATLGSVSLSSSQVLPAYSSNFLLE--SVDYVKLVQSATKTGKLNHGKLVHSHMIRT 90
           I  +A +G+ S+S+  +      + L+E  +  Y  L+++ T    +  G+ +HS +IR+
Sbjct: 92  IRGYAEIGN-SISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 151

Query: 91  SFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIV 127
            F   +++QN+LL++Y  CGD  SA K+FDKM + ++V
Sbjct: 152 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

[Close]

BLAST of CSPI03G28420 vs. TAIR 10
Match: AT2G37320.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-08
Identity = 21/66 (31.82%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           +  L+ + T +G L  G+ VH   +    +  L + N+L+++YCKCGD + A ++FD+ S
Sbjct: 224 FTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFS 283

Query: 122 KSNIVT 128
             ++V+
Sbjct: 284 NKDVVS 289

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BLAST of CSPI03G28420 vs. TAIR 10
Match: AT5G13270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKL 116
           + S  Y  L ++  +   L+HG+L+H  M        + LQN +L +YC+C     ADKL
Sbjct: 81  VSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKL 140

Query: 117 FDKMSKSNIVTQ 129
           FD+MS+ N V++
Sbjct: 141 FDEMSELNAVSR 152

The following BLAST results are available for this feature:

BLAST of CSPI03G28420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRV9	2.5e-12	37.72	Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana OX...	[more]
Q9LIQ7	5.4e-07	37.88	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
A8MQA3	7.1e-07	32.65	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9ZUT4	1.2e-06	31.82	Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX...	[more]
Q9LYU9	3.5e-06	36.11	Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidop...	[more]

BLAST of CSPI03G28420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBY6	2.0e-60	78.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645920 PE=4 SV=1	[more]
A0A0A0KSU3	3.4e-60	95.28	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6486...	[more]
A0A1S3CAH5	3.6e-54	88.19	pentatricopeptide repeat-containing protein At3g13880 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3BP01	3.7e-43	89.62	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1I7D1	1.5e-39	70.87	pentatricopeptide repeat-containing protein At3g13880 OS=Cucurbita maxima OX=366...	[more]

BLAST of CSPI03G28420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741772.1	7.0e-60	95.28	pentatricopeptide repeat-containing protein At3g13880 [Cucumis sativus]	[more]
XP_008459568.1	7.5e-54	88.19	PREDICTED: pentatricopeptide repeat-containing protein At3g13880 [Cucumis melo]	[more]
XP_038889992.1	4.0e-47	79.53	pentatricopeptide repeat-containing protein At3g13880 [Benincasa hispida] >XP_03...	[more]
KAE8648993.1	5.2e-47	95.28	hypothetical protein Csa_009190 [Cucumis sativus]	[more]
KAA0039298.1	7.7e-43	89.62	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK00482...	[more]

BLAST of CSPI03G28420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13880.1	1.8e-13	37.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	3.9e-08	37.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	5.0e-08	32.65	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G37320.1	8.6e-08	31.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G13270.1	2.5e-07	36.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 98..125 e-value: 5.0E-6 score: 26.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 98..126 e-value: 3.0E-6 score: 25.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 93..127 score: 9.273317
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 29..137 e-value: 3.9E-9 score: 38.1
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 52..127
None	No IPR available	PANTHER	PTHR24015:SF811	OS01G0959600 PROTEIN	coord: 52..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28420.1	CSPI03G28420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding