CSPI03G28410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G28410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Complex1_LYR domain-containing protein
Location	Chr3: 26012812 .. 26013250 (-)
RNA-Seq Expression	CSPI03G28410
Synteny	CSPI03G28410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTCAACAGTGTGCACCATCAAAAGGCAATAGTACTTCACTCTCAGCTCAGATCACAAAGAAACAAACTTTTCTTTCTTCCTCATTTGATCTTTGTTTTCAATTGTAATTGACATGGGCTGTGATGCACAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCCTGA

mRNA sequence

ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTCAACAGTGTGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCCTGA

Coding sequence (CDS)

ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTCAACAGTGTGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCCTGA

Protein sequence

MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP*

Homology

[Close]

BLAST of CSPI03G28410 vs. ExPASy TrEMBL
Match: A0A0A0L9E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.8e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. ExPASy TrEMBL
Match: A0A6J1EY92 (uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC111439884 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 101/110 (91.82%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVKKH+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. ExPASy TrEMBL
Match: A0A6J1HS51 (uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.6e-49
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. ExPASy TrEMBL
Match: A0A5D3BQE5 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00940 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.3e-44
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAK YRQLLKAVKKH+GKEESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLAR
Sbjct: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEV 108
           DYTFLLNS     DLLFSYNIAVDRSDEMKR+LGKSAASVGLSLPE+
Sbjct: 61  DYTFLLNS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEI 102

[Close]

BLAST of CSPI03G28410 vs. ExPASy TrEMBL
Match: A0A6J1C0V5 (uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006395 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.3e-44
Identity = 91/110 (82.73%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+SEALQVA+VYR+LLKAVK H+GKEESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA 
Sbjct: 1   MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLAH 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DY  LLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASVGL LPE YQP
Sbjct: 61  DYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQP 110

[Close]

BLAST of CSPI03G28410 vs. NCBI nr
Match: XP_004144434.1 (uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharacterized protein LOC101204721 [Cucumis sativus] >KGN58453.1 hypothetical protein Csa_001238 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. NCBI nr
Match: XP_022933120.1 (uncharacterized protein LOC111439884 [Cucurbita moschata] >XP_022933121.1 uncharacterized protein LOC111439884 [Cucurbita moschata])

HSP 1 Score: 204.9 bits (520), Expect = 3.6e-49
Identity = 101/110 (91.82%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVKKH+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. NCBI nr
Match: XP_022967927.1 (uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharacterized protein LOC111467294 [Cucurbita maxima] >KAG6603158.1 hypothetical protein SDJN03_03767, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. NCBI nr
Match: XP_038889144.1 (uncharacterized protein LOC120079034 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVK H+GKEESKKHFVDYVAQKFRDK+ILSKPHS+QQEIKLA 
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEESKKHFVDYVAQKFRDKTILSKPHSVQQEIKLAL 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIAVDRS+EMKR+LGKSAASVGL LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSEEMKRILGKSAASVGLKLPEPYQP 110

[Close]

BLAST of CSPI03G28410 vs. NCBI nr
Match: XP_023544932.1 (uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo] >XP_023544933.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-47
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+ S +SKPHS+QQ+IKLAR
Sbjct: 1   MNSEASQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of CSPI03G28410 vs. TAIR 10
Match: AT5G51960.1 (CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-32
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+ E +  A+VYR LLKAV KHVGKE+ K HF+D+V Q+FR        ++  ++I LAR
Sbjct: 1   MSGEVVLAARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFR-------KNANSEKINLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           +YT+LLNS+H  KDLLFSYNIAVDR++EMKRVL KSAASVGL LPEVY+P
Sbjct: 61  NYTYLLNSIHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYEP 103

The following BLAST results are available for this feature:

BLAST of CSPI03G28410 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G28410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9E2	2.8e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1	[more]
A0A6J1EY92	1.7e-49	91.82	uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC1114398...	[more]
A0A6J1HS51	6.6e-49	90.91	uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294...	[more]
A0A5D3BQE5	8.3e-44	90.65	Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1C0V5	8.3e-44	82.73	uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of CSPI03G28410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144434.1	5.9e-52	100.00	uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharact...	[more]
XP_022933120.1	3.6e-49	91.82	uncharacterized protein LOC111439884 [Cucurbita moschata] >XP_022933121.1 unchar...	[more]
XP_022967927.1	1.4e-48	90.91	uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharac...	[more]
XP_038889144.1	3.0e-48	91.82	uncharacterized protein LOC120079034 [Benincasa hispida]	[more]
XP_023544932.1	5.7e-47	89.09	uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo] >XP_023544933....	[more]

BLAST of CSPI03G28410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51960.1	5.5e-32	62.73	CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 B...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13233	Complex1_LYR_2	coord: 9..102 e-value: 4.1E-8 score: 33.9
None	No IPR available	PANTHER	PTHR35763	COMPLEX 1 LYR-LIKE PROTEIN	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28410.1	CSPI03G28410.1	mRNA