CSPI03G28290 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G28290
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
LocationChr3: 25901807 .. 25902052 (-)
RNA-Seq ExpressionCSPI03G28290
SyntenyCSPI03G28290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATATGTGAATGACCAGTCGGAGGCCATTGTAGAATGGCCGAATGTACAACATCAATCGGAGGACGCCTTCTATGCAGAAGTCATGAAACAGTTGCAGGCAATCCCTGAAATGAGCACTCGCGATAGAAGGTGTCTTATGTGGGCATTAATGTGCAATGTCCATGATATGAAAGCACTTTGGGAGATATCCAACAAGCTTAAATTGGACTACCGCTTAATCATGCTCGAAGATAATGCTTGA

mRNA sequence

ATGAAATATGTGAATGACCAGTCGGAGGCCATTGTAGAATGGCCGAATGTACAACATCAATCGGAGGACGCCTTCTATGCAGAAGTCATGAAACAGTTGCAGGCAATCCCTGAAATGAGCACTCGCGATAGAAGGTGTCTTATGTGGGCATTAATGTGCAATGTCCATGATATGAAAGCACTTTGGGAGATATCCAACAAGCTTAAATTGGACTACCGCTTAATCATGCTCGAAGATAATGCTTGA

Coding sequence (CDS)

ATGAAATATGTGAATGACCAGTCGGAGGCCATTGTAGAATGGCCGAATGTACAACATCAATCGGAGGACGCCTTCTATGCAGAAGTCATGAAACAGTTGCAGGCAATCCCTGAAATGAGCACTCGCGATAGAAGGTGTCTTATGTGGGCATTAATGTGCAATGTCCATGATATGAAAGCACTTTGGGAGATATCCAACAAGCTTAAATTGGACTACCGCTTAATCATGCTCGAAGATAATGCTTGA

Protein sequence

MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA*
Homology
[Close]
BLAST of CSPI03G28290 vs. ExPASy TrEMBL
Match: A0A0A0LEB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.9e-35
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           MKYVNDQSEAIVEWP+VQHQS+DAFYAEVMKQLQAIPE+ST DRRCLMW LMCNVHDMKA
Sbjct: 26  MKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLMWTLMCNVHDMKA 85

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
           LWEISN+LKLDY  +MLEDNA
Sbjct: 86  LWEISNELKLDYCTVMLEDNA 106

[Close]
BLAST of CSPI03G28290 vs. ExPASy TrEMBL
Match: A0A5D3BQR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00530 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.1e-16
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 1  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
          M+Y N+Q + I E PN+Q Q E +  AEV++QLQ +PE+STRDR  LMW +M N+ DMKA
Sbjct: 1  MEYANNQLKVIAEEPNLQRQDERSSRAEVVRQLQEVPELSTRDRVRLMWKIMRNIDDMKA 60

Query: 61 LWEISNKLKLDYRLIMLEDNA 82
            E+ NKLKLDY + +L+DNA
Sbjct: 61 FLEVPNKLKLDYCMGILKDNA 81

[Close]
BLAST of CSPI03G28290 vs. ExPASy TrEMBL
Match: A0A5A7VIQ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00470 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A
Sbjct: 75  IEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLSTRDRVRLLWIIMHNVHNMRA 134

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
             E+ ++LKLDY   MLEDNA
Sbjct: 135 FLEVPDELKLDYCTTMLEDNA 155

[Close]
BLAST of CSPI03G28290 vs. ExPASy TrEMBL
Match: A0A5D3C5I7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00500 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A
Sbjct: 75  IEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLSTRDRVRLLWIIMHNVHNMRA 134

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
             E+ ++LKLDY   MLEDNA
Sbjct: 135 FLEVPDELKLDYCTTMLEDNA 155

[Close]
BLAST of CSPI03G28290 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           M++ ND+ +AIVEW NVQ Q   A   EV++QLQ IPE+S  DR   M  LMCNV DMKA
Sbjct: 84  MEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKA 143

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
             +I ++LKLDY  I+ +DNA
Sbjct: 144 FLDILDELKLDYCTIIFQDNA 164

[Close]
BLAST of CSPI03G28290 vs. NCBI nr
Match: KGN58436.1 (hypothetical protein Csa_000900 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           MKYVNDQSEAIVEWP+VQHQS+DAFYAEVMKQLQAIPE+ST DRRCLMW LMCNVHDMKA
Sbjct: 26  MKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLMWTLMCNVHDMKA 85

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
           LWEISN+LKLDY  +MLEDNA
Sbjct: 86  LWEISNELKLDYCTVMLEDNA 106

[Close]
BLAST of CSPI03G28290 vs. NCBI nr
Match: KAA0039263.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00449.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 1  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
          M+Y N+Q + I E PN+Q Q E +  AEV++QLQ +PE+STRDR  LMW +M N+ DMKA
Sbjct: 1  MEYANNQLKVIAEEPNLQRQDERSSRAEVVRQLQEVPELSTRDRVRLMWKIMRNIDDMKA 60

Query: 61 LWEISNKLKLDYRLIMLEDNA 82
            E+ NKLKLDY + +L+DNA
Sbjct: 61 FLEVPNKLKLDYCMGILKDNA 81

[Close]
BLAST of CSPI03G28290 vs. NCBI nr
Match: KAA0065601.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A
Sbjct: 75  IEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLSTRDRVRLLWIIMHNVHNMRA 134

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
             E+ ++LKLDY   MLEDNA
Sbjct: 135 FLEVPDELKLDYCTTMLEDNA 155

[Close]
BLAST of CSPI03G28290 vs. NCBI nr
Match: TYK07171.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A
Sbjct: 75  IEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLSTRDRVRLLWIIMHNVHNMRA 134

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
             E+ ++LKLDY   MLEDNA
Sbjct: 135 FLEVPDELKLDYCTTMLEDNA 155

[Close]
BLAST of CSPI03G28290 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 5.2e-13
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 1   MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKA 60
           M++ ND+ +AIVEW NVQ Q   A   EV++QLQ IPE+S  DR   M  LMCNV DMKA
Sbjct: 84  MEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKA 143

Query: 61  LWEISNKLKLDYRLIMLEDNA 82
             +I ++LKLDY  I+ +DNA
Sbjct: 144 FLDILDELKLDYCTIIFQDNA 164

The following BLAST results are available for this feature:
BLAST of CSPI03G28290 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G28290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEB98.9e-3588.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1[more]
A0A5D3BQR57.1e-1655.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VIQ22.1e-1555.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C5I72.1e-1555.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4692.5e-1354.32Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI03G28290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58436.11.8e-3488.89hypothetical protein Csa_000900 [Cucumis sativus][more]
KAA0039263.11.5e-1555.56retrotransposon protein [Cucumis melo var. makuwa] >TYK00449.1 retrotransposon p... [more]
KAA0065601.14.2e-1555.56retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07171.14.2e-1555.56retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060529.15.2e-1354.32retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
BLAST of CSPI03G28290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G28290.1CSPI03G28290.1mRNA