CSPI03G28110 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTAATTTCGGTTCAAGAACTATCTTACTATTAATGTTCCATAGTATGTAACTGATGGGCATATTATTTCAAATATTTGAATAGCTTGCTTAAGTGGACTTCGATCCTCATCATCATTAATGAGTGTTTCCAATTCCTTTGTTCTTATAATGATGATACGCACTGTACTATCTCTTCTGGTGGTAAATGTAGGAGGAAGTGCTGCAAGTGGTGAAGAGCCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACTGAGGAGGGGAAGGTTCCTCACTATGATGATCATCTAACACCGGCGGAAAGACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGACTGGCTAAGAAAGCTAATAAATCTCATCGCGACCGAATCCAGGACTTTAATCAATATCTAGCAAACATGAGTGAGCATTATGACATTCCCAAAGTTGGTCCTGGCTGATTCTTTTTCTTAGTTTCAAATTTGTGGATGGGATGTATTGAGTAGTGGCCAGACCCTACTTGAACCGAATTGTATTAATGTTTGCAGAAGGAACAAACTGCTGTTTATTAGTGGATGATGTGTACTTGTTGGTATAGATATGGCTATTGAAACTTCAGACTTCAGTTGAAATCTACATCTAAACTGCTTCCTAGTTCCCACCCAGGTTTTGTGGTCTTTCCAATTACATGATTGCATGG ATTTAATTTCGGTTCAAGAACTATCTTACTATTAATGTTCCATAGTATGTAACTGATGGGCATATTATTTCAAATATTTGAATAGCTTGCTTAAGTGGACTTCGATCCTCATCATCATTAATGAGTGTTTCCAATTCCTTTGTTCTTATAATGATGATACGCACTGTACTATCTCTTCTGGTGGTAAATGTAGGAGGAAGTGCTGCAAGTGGTGAAGAGCCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACTGAGGAGGGGAAGGTTCCTCACTATGATGATCATCTAACACCGGCGGAAAGACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGACTGGCTAAGAAAGCTAATAAATCTCATCGCGACCGAATCCAGGACTTTAATCAATATCTAGCAAACATGAGTGAGCATTATGACATTCCCAAAGTTGGTCCTGGCTGATTCTTTTTCTTAGTTTCAAATTTGTGGATGGGATGTATTGAGTAGTGGCCAGACCCTACTTGAACCGAATTGTATTAATGTTTGCAGAAGGAACAAACTGCTGTTTATTAGTGGATGATGTGTACTTGTTGGTATAGATATGGCTATTGAAACTTCAGACTTCAGTTGAAATCTACATCTAAACTGCTTCCTAGTTCCCACCCAGGTTTTGTGGTCTTTCCAATTACATGATTGCATGG ATGAGTGTTTCCAATTCCTTTGTTCTTATAATGATGATACGCACTGTACTATCTCTTCTGGTGGTAAATGTAGGAGGAAGTGCTGCAAGTGGTGAAGAGCCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACTGAGGAGGGGAAGGTTCCTCACTATGATGATCATCTAACACCGGCGGAAAGACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGACTGGCTAAGAAAGCTAATAAATCTCATCGCGACCGAATCCAGGACTTTAATCAATATCTAGCAAACATGAGTGAGCATTATGACATTCCCAAAGTTGGTCCTGGCTGA MSVSNSFVLIMMIRTVLSLLVVNVGGSAASGEEPSDANEEEIDEANKSTEEGKVPHYDDHLTPAERRYIEQKERIDVHRLAKKANKSHRDRIQDFNQYLANMSEHYDIPKVGPG* Homology
BLAST of CSPI03G28110 vs. ExPASy Swiss-Prot
Match: B0JZ89 (Protein FAM32A OS=Xenopus tropicalis OX=8364 GN=fam32a PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 8.7e-09 Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy Swiss-Prot
Match: Q6GQN4 (Protein FAM32A-like OS=Danio rerio OX=7955 GN=fam32al PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.3e-08 Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy Swiss-Prot
Match: B2RYG1 (Protein FAM32A OS=Rattus norvegicus OX=10116 GN=Fam32a PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 7.3e-08 Identity = 24/53 (45.28%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy Swiss-Prot
Match: Q9CR80 (Protein FAM32A OS=Mus musculus OX=10090 GN=Fam32a PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.6e-07 Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy Swiss-Prot
Match: A6QR31 (Protein FAM32A OS=Bos taurus OX=9913 GN=FAM32A PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06 Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy TrEMBL
Match: A0A0A0LE92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G640580 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 4.0e-49 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy TrEMBL
Match: A0A5D3DC76 (Protein FAM32A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00800 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy TrEMBL
Match: A0A1S3CN03 (protein FAM32A OS=Cucumis melo OX=3656 GN=LOC103502791 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42 Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy TrEMBL
Match: A0A6J1IS50 (protein FAM32A-like OS=Cucurbita maxima OX=3661 GN=LOC111480025 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 3.7e-39 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of CSPI03G28110 vs. ExPASy TrEMBL
Match: A0A6J1GVE6 (protein FAM32A OS=Cucurbita moschata OX=3662 GN=LOC111457896 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 4.9e-39 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of CSPI03G28110 vs. NCBI nr
Match: KAA0068186.1 (protein FAM32A [Cucumis melo var. makuwa] >TYK21108.1 protein FAM32A [Cucumis melo var. makuwa]) HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of CSPI03G28110 vs. NCBI nr
Match: XP_004144416.1 (protein FAM32A [Cucumis sativus] >XP_004144417.1 protein FAM32A [Cucumis sativus] >KGN58576.2 hypothetical protein Csa_001967 [Cucumis sativus]) HSP 1 Score: 181.8 bits (460), Expect = 3.4e-42 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CSPI03G28110 vs. NCBI nr
Match: XP_008465099.1 (PREDICTED: protein FAM32A [Cucumis melo]) HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41 Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CSPI03G28110 vs. NCBI nr
Match: XP_022980751.1 (protein FAM32A-like [Cucurbita maxima] >XP_022980752.1 protein FAM32A-like [Cucurbita maxima]) HSP 1 Score: 170.6 bits (431), Expect = 7.7e-39 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of CSPI03G28110 vs. NCBI nr
Match: XP_023527034.1 (protein FAM32A [Cucurbita pepo subsp. pepo] >XP_023527035.1 protein FAM32A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 170.6 bits (431), Expect = 7.7e-39 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of CSPI03G28110 vs. TAIR 10
Match: AT1G16810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 395 Blast hits to 394 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 91; Plants - 65; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). ) HSP 1 Score: 114.4 bits (285), Expect = 6.1e-26 Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of CSPI03G28110 vs. TAIR 10
Match: AT1G16810.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 114.4 bits (285), Expect = 6.1e-26 Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|