CSPI03G27700 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G27700
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Spc97 / Spc98 family of spindle pole body (SBP) component
Location	Chr3: 25222523 .. 25224791 (+)
RNA-Seq Expression	CSPI03G27700
Synteny	CSPI03G27700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTCTTCTTATTTTGATGTATGAGAAATTTTTACTATCATTTTTATTGACACAGTATTATGATGTATTTGGCAGGACCTGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGTATGTTGCATTTATTCCAATTTTATTACCTCTAGTTATGCCTTTTGTCTATTAAGTCATTATCTTAAGCATAGCTAGGTGGACAAGACACACATTGTCATCTCAAAAGTCAACAATTCAATTCTTCACCCACCCTATTGAGCTAAAACAAAAATATGAATCTCGCTCACTATTTTGGTGTTTTCTACTATATTAGTTGTTGAACCAGTTACCATTCAATCCAAATGTCAATATATTTGATCTCCCACTCTTACACTGTTGAACTAGGGAAAATAAGTGTCTAGAAAGCAGGTGTAAATTCTCTCTTGGCATCATTATCATACATCCACTCTGTTAGCTATCTTTCATATTAGTTACTGAACTAATTTTGTATTTCTCACACTATAAATCTAGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTTGGTACCATTTTCAAGTTGTTGTGTTTGTATTGTTCAAGACCACATTTTGGAAAGAATAGTGAAATGTCATGTTAATTATTGCTTTGTTATTTTAATATTCCATATTAACAGGGAAAAAAAACTTTCGACGACTACATTAACCTTTTGGTATTCGTAAAGCCTTCTATTCATATGAATTTTCACGATAGCGCTTATGCATTGGATAGATAAGTAGTAGATTAGTTTGATCATTTCCGTTCCTAGTATTTTTGCTCAGTACTCTGGAGTGGTGGTTGTTTCCATTGTGTTTTCTTATAATGGCACTAGATAGGTGTTTAGAATCACGTTGGAAAGATGTGAGGCCTCATGATCATAAGATACATGAGTTACTTCTCTCGTAGTCAATTGGTATAGAGATGAAGGTATTCATGTTTATCTTATATGATATCAAATATATGAAGTCCCCTCAAGTATTTGTTCCAAAAAAGAAAAAAGAAAGACAAAATTTGACCCAAGAAAGGTGAACCCAAAGAGATCTTGAGAGAGGAGGTATACAGAGGATCTTGCATTAGAAAAACTTACCATGATACTCTACTCGTTATCAACTATTTAGATGGATACCATTTTTATCTATTAATTGGAAGTTTGGAGAAGTACTTTCTTTCTCACCCCCTACATTCTCTCGTTTTCTGCCTTCCTCGAGTGGTCAGATTCGTTCGTTCTATTTACATTTGTAGATTTACTAATTCAAATGAATGGTATCATTGGAGATCGTCTCAATAAATAATGGTTAAGAGGTCAAAGTTTCAATTGATGGTGTCTACCTACCTATAAATTAGTTTCCTACGAGTTTTCTTGACATTCAAATGTTGTAGGCTAGACAAGTTGTTTGGTGAGATTAGTCGAGCTGCGCGTAGGCTAGTCTAGACACTCACAGATATAAAAAAAACGCATAGTATCATTTGAATTGAACCTTATTATAATTTCGTGTAGGGAACTGTTCTTAATGACTTGCACATAATGTTGTGCTTCTGAATTTGCATTCCCAACTTTTGAACTTATATTTCTCGTCTTCTTTTCCCTCTCTCCTTTGTCTTTCTAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGAATACTAGAAGTTCATCTGATTCATGGAAGTTGTCTTTGCCAACCTGTCGGCATCATGCACAGCTTCCCACATTGCAAAACTTGGCAGGAATCATTCTAACAGCCATGGTGGTCGCCAACATTTTTGTTAGTTATAAATATAATAGTGCAGGAAGCGAAAGGAATATGTATTAATGGTTTGAGCTATATCTTATTGAGCCATATCAGATGACAGGGAAAATTTTGTAGTTCCACTCCATTCATTTATTGTCACAAAACGAAGCATTTGAGAACAAATTCTCAAGTTTAGTCTTTATTCTTCTATTTGGTAAAATATAGTCTAATCTGTCATGATTAATTTTGTATCATACCTCTCTTTATAATATAAATTAATTTAAATTAGATGTTAA

mRNA sequence

GTTTTTCTTCTTATTTTGATGTATGAGAAATTTTTACTATCATTTTTATTGACACAGTATTATGATGTATTTGGCAGGACCTGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGAATACTAGAAGTTCATCTGATTCATGGAAGTTGTCTTTGCCAACCTGTCGGCATCATGCACAGCTTCCCACATTGCAAAACTTGGCAGGAATCATTCTAACAGCCATGGTGGTCGCCAACATTTTTGTTAGTTATAAATATAATAGTGCAGGAAGCGAAAGGAATATGTATTAATGGTTTGAGCTATATCTTATTGAGCCATATCAGATGACAGGGAAAATTTTGTAGTTCCACTCCATTCATTTATTGTCACAAAACGAAGCATTTGAGAACAAATTCTCAAGTTTAGTCTTTATTCTTCTATTTGGTAAAATATAGTCTAATCTGTCATGATTAATTTTGTATCATACCTCTCTTTATAATATAAATTAATTTAAATTAGATGTTAA

Coding sequence (CDS)

ATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGA

Protein sequence

MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS*

Homology

[Close]

BLAST of CSPI03G27700 vs. ExPASy TrEMBL
Match: A0A0A0LBP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G633280 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.8e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS
Sbjct: 93  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 152

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 102
           NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS
Sbjct: 153 NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 193

[Close]

BLAST of CSPI03G27700 vs. ExPASy TrEMBL
Match: A0A0A0KW48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166940 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.3e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDS
Sbjct: 214 MLVLQRAKAVGHENLAEKFDLKMQRAIGFVLMEHLKGELRTSDVSDLSQSALNACNLLDS 273

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK 101
           NLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Sbjct: 274 NLEKILSIDEIMASICSDRRKKPGKRPQEKVDSRYKKNDK 313

[Close]

BLAST of CSPI03G27700 vs. ExPASy TrEMBL
Match: A0A1S3CBX7 (uncharacterized protein LOC103499220 OS=Cucumis melo OX=3656 GN=LOC103499220 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDL+TLR IGFVLMEHLKG+LRTSDV+DLSQS  NACNLLDS
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLKTLRTIGFVLMEHLKGELRTSDVTDLSQSALNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK 98
           NLEK L IDEIM SIC DRRKKPGKR REKVD   ++
Sbjct: 95  NLEKSLPIDEIMTSICLDRRKKPGKRPREKVDFEIQE 131

[Close]

BLAST of CSPI03G27700 vs. ExPASy TrEMBL
Match: A0A1S3BQH9 (uncharacterized protein LOC103492413 OS=Cucumis melo OX=3656 GN=LOC103492413 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLD 60
           MLVLQRAKAIGHENLAEKFDL+TLRAIGFVLMEHLKG+LRTSDVSDLSQS T NACNLLD
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLKTLRAIGFVLMEHLKGELRTSDVSDLSQSATLNACNLLD 94

Query: 61  SNLEKILSIDEIMASICSDRRKKPGKRSRE 90
           SN+EKILSIDEIMASICSDRRKKPGKR R+
Sbjct: 95  SNVEKILSIDEIMASICSDRRKKPGKRPRK 124

[Close]

BLAST of CSPI03G27700 vs. ExPASy TrEMBL
Match: A0A5A7UQA1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001160 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.8e-35
Identity = 82/90 (91.11%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLD 60
           MLVLQRAKAIGHENLAEKFDL+TLRAIGFVLMEHLKG+LRTSDVSDLSQS T NACNLLD
Sbjct: 94  MLVLQRAKAIGHENLAEKFDLKTLRAIGFVLMEHLKGELRTSDVSDLSQSATLNACNLLD 153

Query: 61  SNLEKILSIDEIMASICSDRRKKPGKRSRE 90
           SN+EKILSIDEIMASICSDRRKKPGKR ++
Sbjct: 154 SNVEKILSIDEIMASICSDRRKKPGKRGKK 183

[Close]

BLAST of CSPI03G27700 vs. NCBI nr
Match: XP_011651663.2 (uncharacterized protein LOC101210446 [Cucumis sativus] >XP_011651665.2 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_011651666.2 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_011651667.2 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738444.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738445.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738446.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738447.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738449.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738450.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738451.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738452.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738453.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738454.1 uncharacterized protein LOC101210446 [Cucumis sativus] >XP_031738455.1 uncharacterized protein LOC101210446 [Cucumis sativus] >KAE8650857.1 hypothetical protein Csa_002034 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 5.8e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 102
           NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS
Sbjct: 95  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS 135

[Close]

BLAST of CSPI03G27700 vs. NCBI nr
Match: KGN53863.2 (hypothetical protein Csa_019174 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDS
Sbjct: 169 MLVLQRAKAVGHENLAEKFDLKMQRAIGFVLMEHLKGELRTSDVSDLSQSALNACNLLDS 228

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK 101
           NLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Sbjct: 229 NLEKILSIDEIMASICSDRRKKPGKRPQEKVDSRYKKNDK 268

[Close]

BLAST of CSPI03G27700 vs. NCBI nr
Match: XP_011653427.1 (uncharacterized protein LOC105435221 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDS
Sbjct: 35  MLVLQRAKAVGHENLAEKFDLKMQRAIGFVLMEHLKGELRTSDVSDLSQSALNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK 101
           NLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Sbjct: 95  NLEKILSIDEIMASICSDRRKKPGKRPQEKVDSRYKKNDK 134

[Close]

BLAST of CSPI03G27700 vs. NCBI nr
Match: XP_008450999.1 (PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 4.6e-35
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLD 60
           MLVLQRAKAIGHENLAEKFDL+TLRAIGFVLMEHLKG+LRTSDVSDLSQS T NACNLLD
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLKTLRAIGFVLMEHLKGELRTSDVSDLSQSATLNACNLLD 94

Query: 61  SNLEKILSIDEIMASICSDRRKKPGKRSRE 90
           SN+EKILSIDEIMASICSDRRKKPGKR R+
Sbjct: 95  SNVEKILSIDEIMASICSDRRKKPGKRPRK 124

[Close]

BLAST of CSPI03G27700 vs. NCBI nr
Match: XP_008460383.1 (PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460384.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460385.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460387.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460388.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460389.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460390.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_016902549.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 4.6e-35
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1   MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDS 60
           MLVLQRAKAIGHENLAEKFDL+TLR IGFVLMEHLKG+LRTSDV+DLSQS  NACNLLDS
Sbjct: 35  MLVLQRAKAIGHENLAEKFDLKTLRTIGFVLMEHLKGELRTSDVTDLSQSALNACNLLDS 94

Query: 61  NLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK 98
           NLEK L IDEIM SIC DRRKKPGKR REKVD   ++
Sbjct: 95  NLEKSLPIDEIMTSICLDRRKKPGKRPREKVDFEIQE 131

[Close]

BLAST of CSPI03G27700 vs. TAIR 10
Match: AT1G80245.1 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-12
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 2   LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNAC 61
           L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + C
Sbjct: 36  LAIQRAKISGHQELADKFDLKLLRSLGLVLMEH--ARKRVQNDTSLAPSVVHQLRLLDNC 95

Query: 62  NLLDSNLEKILSIDEIMASICSDRRKKPGKRSR 89
           NLL ++++  + I+EI+  IC ++ KK  ++ R
Sbjct: 96  NLLKTHVDDAVDIEEILTQICDNKSKKKARKRR 126

[Close]

BLAST of CSPI03G27700 vs. TAIR 10
Match: AT1G80245.2 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-12
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 2   LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNAC 61
           L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + C
Sbjct: 36  LAIQRAKISGHQELADKFDLKLLRSLGLVLMEH--ARKRVQNDTSLAPSVVHQLRLLDNC 95

Query: 62  NLLDSNLEKILSIDEIMASICSDRRKKPGKRSR 89
           NLL ++++  + I+EI+  IC ++ KK  ++ R
Sbjct: 96  NLLKTHVDDAVDIEEILTQICDNKSKKKARKRR 126

[Close]

BLAST of CSPI03G27700 vs. TAIR 10
Match: AT1G80245.3 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-12
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 2   LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNAC 61
           L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + C
Sbjct: 36  LAIQRAKISGHQELADKFDLKLLRSLGLVLMEH--ARKRVQNDTSLAPSVVHQLRLLDNC 95

Query: 62  NLLDSNLEKILSIDEIMASICSDRRKKPGKRSR 89
           NLL ++++  + I+EI+  IC ++ KK  ++ R
Sbjct: 96  NLLKTHVDDAVDIEEILTQICDNKSKKKARKRR 126

[Close]

BLAST of CSPI03G27700 vs. TAIR 10
Match: AT4G00695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-10
Identity = 40/95 (42.11%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2   LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGK------LRTSDVSDLSQSTFNA 61
           LV++RAK  G E+L A+KFDL+ LR++G VLME+++ +      L  S V +L  S  ++
Sbjct: 36  LVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVRKRVEDDTSLAPSVVQEL--SLLDS 95

Query: 62  CNLLDSNLEKILSIDEIMASICSDR-RKKPGKRSR 89
           CNLL ++++  + I+EI+  IC+ + +KK  KRSR
Sbjct: 96  CNLLKTHVDDTVDIEEILTDICNKKSKKKTRKRSR 128

[Close]

BLAST of CSPI03G27700 vs. TAIR 10
Match: AT4G00695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-10
Identity = 40/95 (42.11%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2   LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGK------LRTSDVSDLSQSTFNA 61
           LV++RAK  G E+L A+KFDL+ LR++G VLME+++ +      L  S V +L  S  ++
Sbjct: 36  LVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVRKRVEDDTSLAPSVVQEL--SLLDS 95

Query: 62  CNLLDSNLEKILSIDEIMASICSDR-RKKPGKRSR 89
           CNLL ++++  + I+EI+  IC+ + +KK  KRSR
Sbjct: 96  CNLLKTHVDDTVDIEEILTDICNKKSKKKTRKRSR 128

The following BLAST results are available for this feature:

BLAST of CSPI03G27700 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G27700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBP9	2.8e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G633280 PE=4 SV=1	[more]
A0A0A0KW48	4.3e-39	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166940 PE=3 SV=1	[more]
A0A1S3CBX7	2.2e-35	83.51	uncharacterized protein LOC103499220 OS=Cucumis melo OX=3656 GN=LOC103499220 PE=...	[more]
A0A1S3BQH9	2.2e-35	92.22	uncharacterized protein LOC103492413 OS=Cucumis melo OX=3656 GN=LOC103492413 PE=...	[more]
A0A5A7UQA1	3.8e-35	91.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI03G27700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651663.2	5.8e-46	100.00	uncharacterized protein LOC101210446 [Cucumis sativus] >XP_011651665.2 uncharact...	[more]
KGN53863.2	8.9e-39	88.00	hypothetical protein Csa_019174 [Cucumis sativus]	[more]
XP_011653427.1	8.9e-39	88.00	uncharacterized protein LOC105435221 [Cucumis sativus]	[more]
XP_008450999.1	4.6e-35	92.22	PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo]	[more]
XP_008460383.1	4.6e-35	83.51	PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo] >XP_008460384.1 P...	[more]

BLAST of CSPI03G27700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80245.1	4.5e-12	38.71	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]
AT1G80245.2	4.5e-12	38.71	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]
AT1G80245.3	4.5e-12	38.71	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]
AT4G00695.1	3.2e-10	42.11	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton ...	[more]
AT4G00695.2	3.2e-10	42.11	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..101
None	No IPR available	PANTHER	PTHR48237	GAMMA-TUBULIN COMPLEX COMPONENT	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G27700.1	CSPI03G27700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005319	lipid transporter activity