CSPI03G26960 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G26960
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontetratricopeptide repeat protein 4 homolog
LocationChr3: 24390704 .. 24391338 (+)
RNA-Seq ExpressionCSPI03G26960
SyntenyCSPI03G26960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTATTTGCACTATTTTTTTCAGATAAAGGGTCTTCTAAATGGATCAAAGTTCATGAAAGGAGAACGCTTCACGACGTTCTAAAGGAGCCGAACTACATTATACCAGGAATACCAGGTGTGATGTTACCCCATTCAATTTCCAACATCATAACTACTTTTTGCATCTTAATTAACGAAAATGACTTTATATTTTCTATATTTGTCTCTTTTGGATGCAGTCTTTTATGTTGTTTCAAGAAACTCAAAATTTTATAAAGATTTCAAAGCTGGGAGATGGGTTCCTCCCTCATAAGTTTATTGGATCAAGCAGAGCATATGCTGTACCATTGTAAGTTCCATAGCAACTTTTTGCTTAGGTCAATGCTGGTTCTCTCAATCTTCTGTTATTTTTCAAATTTTGTTTTCATGATTGACTTAGGGTAGGTTAGGTTATAGTACTTGTTCTTGTGCAATCTAAAGCATTTTACCATTATTATCATATTTATTTATTTTTTCCAAGATTCTCTTTTTTTCTTAGTTGATTGAAAAGTCATTTTGATTGAAATATTTGGTCGGAAGCTAACCTAAACGTAGGTCTTTAGACAAATGCGTATGGGCGGATCAAATCCTCCCACTTCACCGGTCTTAATGAC

mRNA sequence

GATTTATTTGCACTATTTTTTTCAGATAAAGGGTCTTCTAAATGGATCAAAGTTCATGAAAGGAGAACGCTTCACGACGTTCTAAAGGAGCCGAACTACATTATACCAGGAATACCAGTCTTTTATGTTGTTTCAAGAAACTCAAAATTTTATAAAGATTTCAAAGCTGGGAGATGGGTTCCTCCCTCATAAGTTTATTGGATCAAGCAGAGCATATGCTGTACCATTGTAAGTTCCATAGCAACTTTTTGCTTAGGTCAATGCTGGTTCTCTCAATCTTCTGTTATTTTTCAAATTTTGTTTTCATGATTGACTTAGGGTAGGTTAGGTTATAGTACTTGTTCTTGTGCAATCTAAAGCATTTTACCATTATTATCATATTTATTTATTTTTTCCAAGATTCTCTTTTTTTCTTAGTTGATTGAAAAGTCATTTTGATTGAAATATTTGGTCGGAAGCTAACCTAAACGTAGGTCTTTAGACAAATGCGTATGGGCGGATCAAATCCTCCCACTTCACCGGTCTTAATGAC

Coding sequence (CDS)

GATTTATTTGCACTATTTTTTTCAGATAAAGGGTCTTCTAAATGGATCAAAGTTCATGAAAGGAGAACGCTTCACGACGTTCTAAAGGAGCCGAACTACATTATACCAGGAATACCAGTCTTTTATGTTGTTTCAAGAAACTCAAAATTTTATAAAGATTTCAAAGCTGGGAGATGGGTTCCTCCCTCATAA

Protein sequence

DLFALFFSDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS*
Homology
BLAST of CSPI03G26960 vs. ExPASy Swiss-Prot
Match: Q54M20 (Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum OX=44689 GN=ttc4 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 14  KWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDF 55
           KWI+V     +  V+  P YIIP IP+FY+VSR + FYK F
Sbjct: 352 KWIRVKHTTDIAKVISHPTYIIPEIPIFYIVSRGNLFYKKF 392

BLAST of CSPI03G26960 vs. ExPASy TrEMBL
Match: A0A0A0LC81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G611370 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  DLFALFFSDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWV 60
          DLFALFFSDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWV
Sbjct: 4  DLFALFFSDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWV 63

Query: 61 PPS 64
          PPS
Sbjct: 64 PPS 66

BLAST of CSPI03G26960 vs. ExPASy TrEMBL
Match: A0A1S3BHV4 (tetratricopeptide repeat protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103489830 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           ++KGSSKWIKVHERRTLH+VLKEPNYIIPGIPVFY+VSRNSKFYKDFKAGRWVPPS
Sbjct: 309 ANKGSSKWIKVHERRTLHNVLKEPNYIIPGIPVFYLVSRNSKFYKDFKAGRWVPPS 364

BLAST of CSPI03G26960 vs. ExPASy TrEMBL
Match: A0A6J1DZY6 (tetratricopeptide repeat protein 4 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026147 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           +++GSSKWIKV+E+RTLHDVLK PN +IPGIPVFYVV RNSKFYKDFKAGRW PPS
Sbjct: 309 ANEGSSKWIKVNEKRTLHDVLKAPNCLIPGIPVFYVVWRNSKFYKDFKAGRWGPPS 364

BLAST of CSPI03G26960 vs. ExPASy TrEMBL
Match: A0A6J1E576 (tetratricopeptide repeat protein 4 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026147 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           +++GSSKWIKV+E+RTLHDVLK PN +IPGIPVFYVV RNSKFYKDFKAGRW PPS
Sbjct: 295 ANEGSSKWIKVNEKRTLHDVLKAPNCLIPGIPVFYVVWRNSKFYKDFKAGRWGPPS 350

BLAST of CSPI03G26960 vs. ExPASy TrEMBL
Match: A0A5N5FGL6 (Tetratricopeptide repeat protein 4-like protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_003028 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 10  KGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           KGSSKW+KV+E+RTLHDVLKEPN+I+PGIPVFYVVS+ S FYK+FKAG W PPS
Sbjct: 311 KGSSKWVKVNEKRTLHDVLKEPNFIVPGIPVFYVVSKRSSFYKEFKAGNWAPPS 364

BLAST of CSPI03G26960 vs. NCBI nr
Match: XP_011651622.1 (tetratricopeptide repeat protein 4 homolog [Cucumis sativus] >KGN58403.2 hypothetical protein Csa_017563 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 7.9e-25
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           ++KGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS
Sbjct: 307 ANKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 362

BLAST of CSPI03G26960 vs. NCBI nr
Match: XP_008447360.1 (PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 6.7e-24
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           ++KGSSKWIKVHERRTLH+VLKEPNYIIPGIPVFY+VSRNSKFYKDFKAGRWVPPS
Sbjct: 309 ANKGSSKWIKVHERRTLHNVLKEPNYIIPGIPVFYLVSRNSKFYKDFKAGRWVPPS 364

BLAST of CSPI03G26960 vs. NCBI nr
Match: XP_022159856.1 (tetratricopeptide repeat protein 4 homolog isoform X2 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           +++GSSKWIKV+E+RTLHDVLK PN +IPGIPVFYVV RNSKFYKDFKAGRW PPS
Sbjct: 295 ANEGSSKWIKVNEKRTLHDVLKAPNCLIPGIPVFYVVWRNSKFYKDFKAGRWGPPS 350

BLAST of CSPI03G26960 vs. NCBI nr
Match: KAB2602023.1 (tetratricopeptide repeat protein 4-like protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 10  KGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           KGSSKW+KV+E+RTLHDVLKEPN+I+PGIPVFYVVS+ S FYK+FKAG W PPS
Sbjct: 311 KGSSKWVKVNEKRTLHDVLKEPNFIVPGIPVFYVVSKRSSFYKEFKAGNWAPPS 364

BLAST of CSPI03G26960 vs. NCBI nr
Match: XP_022159855.1 (tetratricopeptide repeat protein 4 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 8   SDKGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           +++GSSKWIKV+E+RTLHDVLK PN +IPGIPVFYVV RNSKFYKDFKAGRW PPS
Sbjct: 309 ANEGSSKWIKVNEKRTLHDVLKAPNCLIPGIPVFYVVWRNSKFYKDFKAGRWGPPS 364

BLAST of CSPI03G26960 vs. TAIR 10
Match: AT1G04130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-20
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 10  KGSSKWIKVHERRTLHDVLKEPNYIIPGIPVFYVVSRNSKFYKDFKAGRWVPPS 64
           KGSS  +KV+ERRTLHDVLKEP ++IP IPVFY+VS+ SKFYKDF AG+W PP+
Sbjct: 307 KGSSGMVKVNERRTLHDVLKEPKFVIPEIPVFYIVSKRSKFYKDFTAGKWTPPN 360

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q54M202.2e-0651.22Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum OX=44689 ... [more]
Match NameE-valueIdentityDescription
A0A0A0LC813.0e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G611370 PE=4 SV=1[more]
A0A1S3BHV43.2e-2492.86tetratricopeptide repeat protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC1034898... [more]
A0A6J1DZY66.3e-2082.14tetratricopeptide repeat protein 4 homolog isoform X1 OS=Momordica charantia OX=... [more]
A0A6J1E5766.3e-2082.14tetratricopeptide repeat protein 4 homolog isoform X2 OS=Momordica charantia OX=... [more]
A0A5N5FGL66.3e-2079.63Tetratricopeptide repeat protein 4-like protein OS=Pyrus ussuriensis x Pyrus com... [more]
Match NameE-valueIdentityDescription
XP_011651622.17.9e-2596.43tetratricopeptide repeat protein 4 homolog [Cucumis sativus] >KGN58403.2 hypothe... [more]
XP_008447360.16.7e-2492.86PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis melo][more]
XP_022159856.11.3e-1982.14tetratricopeptide repeat protein 4 homolog isoform X2 [Momordica charantia][more]
KAB2602023.11.3e-1979.63tetratricopeptide repeat protein 4-like protein [Pyrus ussuriensis x Pyrus commu... [more]
XP_022159855.11.3e-1982.14tetratricopeptide repeat protein 4 homolog isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G04130.12.8e-2072.22Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G26960.1CSPI03G26960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051879 Hsp90 protein binding