|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. TGAAAATGCTAATGAAAAATTGGAAGAAAAAAAAGGCGCCTTGTCCTTTTTTATAACTTTTAGTTTCTAGACTGAAAGTGAGGTTTTTTTTCACAATTATGGCCGCTTCTCTTACGAGTGGATGTAGCAATGTAGCAGCTCTGGCTGATTTGTGAAGGGTTGTAAGGGAGATGTTTGATCGGAGTTTAAATGTTCATGACTCTGGAGGCGACAGGTGGACGGGGCAGAGGAGGAATGGCGAAATCTTAGATGGTTTTGGTGAAGTTTATTGATTTTGCTTAATATGCTGAGACCACCAAGCCTTCCTCTACATTTCTTCCCTCCAGAATTCAAAATTGCGTAATCTTAGTCTCTCTCTCTCTCTTTCTGTACTTATTTGCTAAAAAACGTAATTGTTAAAGTTTCTTGCTCTATACAGATTTGGATACAGAGGATTCAGGACAATGCTAATCAAAGGTACATAAGATGGTGAATTAGAGTTCATAAGTTTTGTTGACTATTTTCTTTTAGAACATGGGGATTGATTTACTCTGTTTGGGAAATATTGTCAGAGATGTGGAAGAATATGAGGGTTTAAAAGCTAAATCTCAAGATGAGATCTGA mRNA sequence TGAAAATGCTAATGAAAAATTGGAAGAAAAAAAAGGCGCCTTGTCCTTTTTTATAACTTTTAGTTTCTAGACTGAAAGTGAGGTTTTTTTTCACAATTATGGCCGCTTCTCTTACGAGTGGATGTAGCAATGTAGCAGCTCTGGCTGATTTGTGAAGGGTTGTAAGGGAGATGTTTGATCGGAGTTTAAATGTTCATGACTCTGGAGGCGACAGGTGGACGGGGCAGAGGAGGAATGGCGAAATCTTAGATGGTTTTGGTGAAATTTGGATACAGAGGATTCAGGACAATGCTAATCAAAGAGATGTGGAAGAATATGAGGGTTTAAAAGCTAAATCTCAAGATGAGATCTGA Coding sequence (CDS) ATGTTTGATCGGAGTTTAAATGTTCATGACTCTGGAGGCGACAGGTGGACGGGGCAGAGGAGGAATGGCGAAATCTTAGATGGTTTTGGTGAAATTTGGATACAGAGGATTCAGGACAATGCTAATCAAAGAGATGTGGAAGAATATGAGGGTTTAAAAGCTAAATCTCAAGATGAGATCTGA Protein sequence MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI*
Homology
BLAST of CSPI03G26850 vs. ExPASy TrEMBL
Match: A0A0A0LC70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G610780 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
Query: 1 MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI 60
MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI
Sbjct: 1 MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI 60
BLAST of CSPI03G26850 vs. NCBI nr
Match: KGN58302.1 (hypothetical protein Csa_017525 [Cucumis sativus]) HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
Query: 1 MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI 60
MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI
Sbjct: 1 MFDRSLNVHDSGGDRWTGQRRNGEILDGFGEIWIQRIQDNANQRDVEEYEGLKAKSQDEI 60
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LC70 | 1.9e-26 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G610780 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN58302.1 | 4.0e-26 | 100.00 | hypothetical protein Csa_017525 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..21 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
