CSPI03G26420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G26420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transposase
Location	Chr3: 23822186 .. 23822636 (+)
RNA-Seq Expression	CSPI03G26420
Synteny	CSPI03G26420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGGGTGTGGAAAACTTCATCAAATTTGGATTTTCTAATACAACTAGCTCCTATATTCGTTGTCCTTGTTTGAAATGTGGGAATTGTGAAAAACATAGTAGAAAGGGTGTTAGAGATCACTTGTATGTTAATGGTATTGATGAAAGTTATAAAATTTGGTTTTAGCATGGGGAAGAACTTCCTAACTCTTCCTTCTATGATGAATCTTCAAAGTTTGACATCCATACATGTGAAAATCAAGATGTTGGAAGTGTAAAAGAAATAATTGAAGTTGCTCATGAGGAGTATTCAAAAGACCCAACTGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTGTACGAAAGATGCAAAAAGTACACAAAGTTGTCTACTCTAGTGAAATTGTATAATTTAAAAGTTAGGTATGGATGGAGTGATACTAGTTTTTCAGAATTACTTGA

mRNA sequence

ATGAGTTGGGTGTGGAAAACTTCATCAAATTTGGATTTTCTAATACAACTAGCTCCTATATTCGTTGTCCTTCATGGGGAAGAACTTCCTAACTCTTCCTTCTATGATGAATCTTCAAAGTTTGACATCCATACATGTGAAAATCAAGATGTTGGAAGTGTAAAAGAAATAATTGAAGTTGCTCATGAGGAGTATTCAAAAGACCCAACTGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTAATTACTTGA

Coding sequence (CDS)

ATGAGTTGGGTGTGGAAAACTTCATCAAATTTGGATTTTCTAATACAACTAGCTCCTATATTCGTTGTCCTTCATGGGGAAGAACTTCCTAACTCTTCCTTCTATGATGAATCTTCAAAGTTTGACATCCATACATGTGAAAATCAAGATGTTGGAAGTGTAAAAGAAATAATTGAAGTTGCTCATGAGGAGTATTCAAAAGACCCAACTGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTAATTACTTGA

Protein sequence

MSWVWKTSSNLDFLIQLAPIFVVLHGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPLIT*

Homology

[Close]

BLAST of CSPI03G26420 vs. ExPASy TrEMBL
Match: A0A5D3CA82 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00610 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGE LPNSSFY E SKFD HTCE  DVGSVKE+IEVAHEEYSKDP GFEKLLIDAEKPL
Sbjct: 114 HGEALPNSSFYGECSKFDTHTCEENDVGSVKEMIEVAHEEYSKDPNGFEKLLIDAEKPL 172

[Close]

BLAST of CSPI03G26420 vs. ExPASy TrEMBL
Match: A0A5D3BLQ2 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00290 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 25 HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
          HGEELPNSSFY+ESSKFD HTCE  DVGSVKE+IEVAHEEY KDP GFEKL IDA+KPL
Sbjct: 7  HGEELPNSSFYEESSKFDTHTCEENDVGSVKEMIEVAHEEYLKDPNGFEKLFIDAKKPL 65

[Close]

BLAST of CSPI03G26420 vs. ExPASy TrEMBL
Match: A0A5A7UIX6 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00780 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.8e-20
Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 20 IFVVLHGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDA 79
          +F + H   LPNSSFY ESSKFD HTCE  DVGSVKEIIEVAHEEYSKDP GFEKLLIDA
Sbjct: 10 VFTITH--SLPNSSFYGESSKFDTHTCEENDVGSVKEIIEVAHEEYSKDPNGFEKLLIDA 69

Query: 80 EKPL 84
          EKPL
Sbjct: 70 EKPL 71

[Close]

BLAST of CSPI03G26420 vs. ExPASy TrEMBL
Match: A0A5A7UEC8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001850 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.5e-19
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 26  GEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           G +LPNSSFY ESSKFD HTCE  DVGS+KE+IEV HEEYSKDP GFEKLLID+EKPL
Sbjct: 54  GHKLPNSSFYGESSKFDTHTCEENDVGSIKEMIEVTHEEYSKDPNGFEKLLIDSEKPL 111

[Close]

BLAST of CSPI03G26420 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-18
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 27  EELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           + LPNS FY ESSKFD HTCE  DVGSVKE+IEVAHEEYSKDP GFEKLLIDAEKPL
Sbjct: 84  DALPNSYFYGESSKFDTHTCEENDVGSVKEMIEVAHEEYSKDPNGFEKLLIDAEKPL 140

[Close]

BLAST of CSPI03G26420 vs. NCBI nr
Match: XP_031741715.1 (uncharacterized protein LOC116403911 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFDIHTCE+QDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL
Sbjct: 71  HGEELPNSSFYDESSKFDIHTCEDQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 129

[Close]

BLAST of CSPI03G26420 vs. NCBI nr
Match: XP_031742381.1 (uncharacterized protein LOC116404332 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFDIHTCE+QDVGSVKE+IEVAHEEYSKDPTGFEKLLIDAEKPL
Sbjct: 72  HGEELPNSSFYDESSKFDIHTCEDQDVGSVKEMIEVAHEEYSKDPTGFEKLLIDAEKPL 130

[Close]

BLAST of CSPI03G26420 vs. NCBI nr
Match: XP_031742313.1 (uncharacterized protein LOC116404153 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 25 HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
          HGEELPNSSFYDESSKFDIHTCE+QDVGSVKE+IEVAHEEYSKDPTGFEKLLIDAEKPL
Sbjct: 13 HGEELPNSSFYDESSKFDIHTCEDQDVGSVKEMIEVAHEEYSKDPTGFEKLLIDAEKPL 71

[Close]

BLAST of CSPI03G26420 vs. NCBI nr
Match: XP_031742172.1 (uncharacterized protein LOC116404095 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-23
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFDIHTCE+ DVGSVKE+IEVAHEEYSKDPTGFEKLLIDAEKPL
Sbjct: 72  HGEELPNSSFYDESSKFDIHTCEDDDVGSVKEMIEVAHEEYSKDPTGFEKLLIDAEKPL 130

[Close]

BLAST of CSPI03G26420 vs. NCBI nr
Match: XP_031741731.1 (uncharacterized protein LOC116403926 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 5.8e-23
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFD HTCE++DVGSVKE+IEVAHEEYSKDPTGFEKLLIDAEKPL
Sbjct: 72  HGEELPNSSFYDESSKFDNHTCEDRDVGSVKEMIEVAHEEYSKDPTGFEKLLIDAEKPL 130

The following BLAST results are available for this feature:

BLAST of CSPI03G26420 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G26420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA82	1.3e-20	86.44	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00610 PE...	[more]
A0A5D3BLQ2	1.3e-20	84.75	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00290 PE...	[more]
A0A5A7UIX6	3.8e-20	81.25	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00780 PE...	[more]
A0A5A7UEC8	5.5e-19	81.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CKP0	1.6e-18	84.21	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE...	[more]

BLAST of CSPI03G26420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741715.1	1.4e-24	98.31	uncharacterized protein LOC116403911 [Cucumis sativus]	[more]
XP_031742381.1	3.1e-24	96.61	uncharacterized protein LOC116404332 [Cucumis sativus]	[more]
XP_031742313.1	3.1e-24	96.61	uncharacterized protein LOC116404153 [Cucumis sativus]	[more]
XP_031742172.1	1.2e-23	94.92	uncharacterized protein LOC116404095 [Cucumis sativus]	[more]
XP_031741731.1	5.8e-23	93.22	uncharacterized protein LOC116403926 [Cucumis sativus]	[more]

BLAST of CSPI03G26420 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G26420.1	CSPI03G26420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity