CSPI03G26400 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G26400
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 23809666 .. 23810043 (-)
RNA-Seq Expression	CSPI03G26400
Synteny	CSPI03G26400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATGAAAAAGAAATGAAAGGTCAAAGGAAAGGTGAGGGAGGAAAGAAAGAGATCACATCTCATGAGGGGGAGGGAGGAAAAAAAGGAAGGAAGGAGGGAGATGATGTTGGGTATTTGAAAAAGAGGGAGACGCTGGTTTTTGGCACTAAGGGAATAATGGAAGTAGAGGAGGCAAATCAAAAGGAGGAATCAAAGCCTAAGGAATCTGAGATTAACAAGCAATGGGGTTTTAGGAAACTTGCAAATCCTCCAACCAAAACGGAGGGTAGTGTGTTGGTCTCCATAAAAGGCGAACGAAAAATAGAGAATGATGCGTTGTATGAAAATCCTGCACTAGCCATTAAGCCAAAAGAAGCAGAAAAGTTTAATTAA

mRNA sequence

ATGAATAATGAAAAAGAAATGAAAGGTCAAAGGAAAGGTGAGGGAGGAAAGAAAGAGATCACATCTCATGAGGGGGAGGGAGGAAAAAAAGGAAGGAAGGAGGGAGATGATGTTGGGTATTTGAAAAAGAGGGAGACGCTGGTTTTTGGCACTAAGGGAATAATGGAAGTAGAGGAGGCAAATCAAAAGGAGGAATCAAAGCCTAAGGAATCTGAGATTAACAAGCAATGGGGTTTTAGGAAACTTGCAAATCCTCCAACCAAAACGGAGGGTAGTGTGTTGGTCTCCATAAAAGGCGAACGAAAAATAGAGAATGATGCGTTGTATGAAAATCCTGCACTAGCCATTAAGCCAAAAGAAGCAGAAAAGTTTAATTAA

Coding sequence (CDS)

ATGAATAATGAAAAAGAAATGAAAGGTCAAAGGAAAGGTGAGGGAGGAAAGAAAGAGATCACATCTCATGAGGGGGAGGGAGGAAAAAAAGGAAGGAAGGAGGGAGATGATGTTGGGTATTTGAAAAAGAGGGAGACGCTGGTTTTTGGCACTAAGGGAATAATGGAAGTAGAGGAGGCAAATCAAAAGGAGGAATCAAAGCCTAAGGAATCTGAGATTAACAAGCAATGGGGTTTTAGGAAACTTGCAAATCCTCCAACCAAAACGGAGGGTAGTGTGTTGGTCTCCATAAAAGGCGAACGAAAAATAGAGAATGATGCGTTGTATGAAAATCCTGCACTAGCCATTAAGCCAAAAGAAGCAGAAAAGTTTAATTAA

Protein sequence

MNNEKEMKGQRKGEGGKKEITSHEGEGGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEESKPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN*

Homology

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BLAST of CSPI03G26400 vs. NCBI nr
Match: KAE8650803.1 (hypothetical protein Csa_017586 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 7   MKGQRKGEGGKKEITSHEGEGGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEES 66
           MKGQRKGEGGKKEITSHEGE GKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEES
Sbjct: 1   MKGQRKGEGGKKEITSHEGERGKKGRKEGDDVGYLKKRETLVFGTKGIMEVEEANQKEES 60

Query: 67  KPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN 126
           KPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN
Sbjct: 61  KPKESEINKQWGFRKLANPPTKTEGSVLVSIKGERKIENDALYENPALAIKPKEAEKFN 119

The following BLAST results are available for this feature:

BLAST of CSPI03G26400 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G26400 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G26400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650803.1	3.4e-56	99.16	hypothetical protein Csa_017586 [Cucumis sativus]	[more]

BLAST of CSPI03G26400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G26400.1	CSPI03G26400.1	mRNA