CSPI03G26350 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G26350
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 23699725 .. 23700080 (+)
RNA-Seq ExpressionCSPI03G26350
SyntenyCSPI03G26350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGCGGTGTGAGCAGCTGATTCAAAGACAGTTGATCAGAGCTGTAACTTTGACGTGGACGAAGCAGTTCACAAATTAGAGAAGTTGGGGATCGTTGTCTGAGTGAGAACTTAACGAGCACAAGATAATTTCTATTCATGTTGTTTAATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGATACCATAATTATACATAAACTTTATGTACTATTCTGCTTTCCATTCTCAC

mRNA sequence

CATGCGGTGTGAGCAGCTGATTCAAAGACAGTTGATCAGAGCTGTAACTTTGACGTGGACGAAGCAGTTCACAAATTAGAGAAGTTGGGGATCGTTGTCTGAGTGAGAACTTAACGAGCACAAGATAATTTCTATTCATGTTGTTTAATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGATACCATAATTATACATAAACTTTATGTACTATTCTGCTTTCCATTCTCAC

Coding sequence (CDS)

ATGTCTTCTTATGCCTTCTTTAACTTGGAAAAGAAAGGAAGAGAGGATGCGGATGGGGCATTCTCCTGTGTAGATTTGGGGAGTGCCAACAAGATCGTAGGCATCACCACAGAGGAGATAGTATCCAAAACTAAAGAAGGCGATGCTACCACCACTTGA

Protein sequence

MSSYAFFNLEKKGREDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT*
Homology
[Close]
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match: A0A6J1D2Z1 (uncharacterized protein LOC111016855 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 470 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 519

[Close]
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match: A0A6J1D4B7 (uncharacterized protein LOC111016855 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 465 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 514

[Close]
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match: A0A6J1D1Z1 (uncharacterized protein LOC111016855 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016855 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 469 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 518

[Close]
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match: A0A6J1J295 (uncharacterized protein LOC111482053 OS=Cucurbita maxima OX=3661 GN=LOC111482053 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
           A   LEK G    DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 438 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 481

[Close]
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match: A0A6J1F2F4 (uncharacterized protein LOC111441529 OS=Cucurbita moschata OX=3662 GN=LOC111441529 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
           A   LEK G    DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 458 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 501

[Close]
BLAST of CSPI03G26350 vs. NCBI nr
Match: XP_038892952.1 (uncharacterized protein LOC120081846 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 17  ADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           ADGA+SCVDL SANKI+GITTEEIVSK KEGDA+TT
Sbjct: 486 ADGAYSCVDLRSANKIIGITTEEIVSKAKEGDASTT 521

[Close]
BLAST of CSPI03G26350 vs. NCBI nr
Match: XP_022148091.1 (uncharacterized protein LOC111016855 isoform X3 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 465 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 514

[Close]
BLAST of CSPI03G26350 vs. NCBI nr
Match: XP_022148089.1 (uncharacterized protein LOC111016855 isoform X1 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 470 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 519

[Close]
BLAST of CSPI03G26350 vs. NCBI nr
Match: XP_022148090.1 (uncharacterized protein LOC111016855 isoform X2 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKEGDATTT 53
           A   LEK G    DADGA+SCVDL SANKI+G TTEEI+SK KE DA+ T
Sbjct: 469 AVHKLEKLGIVVRDADGAYSCVDLRSANKIIGTTTEEIISKAKEADASAT 518

[Close]
BLAST of CSPI03G26350 vs. NCBI nr
Match: XP_022934332.1 (uncharacterized protein LOC111441529 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 5   AFFNLEKKG--REDADGAFSCVDLGSANKIVGITTEEIVSKTKE 47
           A   LEK G    DADGA+SCVDL SAN I+GITTEEIV+K KE
Sbjct: 458 AVHKLEKLGILIRDADGAYSCVDLRSANDIIGITTEEIVNKAKE 501

The following BLAST results are available for this feature:
BLAST of CSPI03G26350 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G26350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D2Z11.1e-0666.00uncharacterized protein LOC111016855 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D4B71.1e-0666.00uncharacterized protein LOC111016855 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D1Z11.1e-0666.00uncharacterized protein LOC111016855 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1J2951.1e-0468.18uncharacterized protein LOC111482053 OS=Cucurbita maxima OX=3661 GN=LOC111482053... [more]
A0A6J1F2F41.1e-0468.18uncharacterized protein LOC111441529 OS=Cucurbita moschata OX=3662 GN=LOC1114415... [more]
BLAST of CSPI03G26350 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892952.14.7e-0786.11uncharacterized protein LOC120081846 [Benincasa hispida][more]
XP_022148091.12.3e-0666.00uncharacterized protein LOC111016855 isoform X3 [Momordica charantia][more]
XP_022148089.12.3e-0666.00uncharacterized protein LOC111016855 isoform X1 [Momordica charantia][more]
XP_022148090.12.3e-0666.00uncharacterized protein LOC111016855 isoform X2 [Momordica charantia][more]
XP_022934332.12.2e-0468.18uncharacterized protein LOC111441529 [Cucurbita moschata][more]
BLAST of CSPI03G26350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G26350.1CSPI03G26350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane