CSPI03G25620 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G25620
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	Chr3: 22995201 .. 22997391 (+)
RNA-Seq Expression	CSPI03G25620
Synteny	CSPI03G25620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAACTATTGGAATGGGAAACTTATCCACAAACAAAAAGAGATAGAGTGATAATCTCATCGTCAAGAGAGGTCTTCAATTTACAAACTTGAGAGCGAGAGAAGGACTGTGGGTTATTCGGAAGAAGAAAAAGGTAAAGTTCCATCAAAACTCAAATACAAGCAACAGATAAGACTGAACTCCAAGCACAGCCATCCATGGCTTCCCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCCAAGCCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGTCCAATCACGCCGCCCCTCAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAACCCTCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATTTGTCCCTCCCTAGCCTACGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGGTTGTGGATGATAATGAACCCGAGGAGCGCCTTCTTAACAGATTCCGGCGAGAGGTTATGCGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGTCTCTTTCTACAATTTCTCTTTGGGACTTATCTTCTTACTTGTCAAACTCTTTGACACCTTTTTTTGTCCAGATTTTGATTGATTATGATTCTTCTCCCCTTCAAGCTGTTTTGTATTCGTGTCTGTTTGAATTTGATTGCTGGGAAGAAATTGATACCTTGTCAACAGTTGGCTTCGGAATTTTAAGATTTCATAGAGATTTACAGGGGCTTATCTTTTTACTCTTCCGAGCAACTTAGGTTAAGGTCATAGAGAGTGAAAAAACAGTATCTAAGTGGACTAGAGAGAAAATCTCCTTGGACAACCTACGGCATCTTATAATATCTTAGAATGTTTGAATGTCAAGGAAACTGGTAGGTCACTGAATCATTGATATTAACACTTGTTAGATGCATGATAAAGAAGTATCTCAAATTAATGTAGTGGTCATTTGGGAGATGTAGTTTGAGTTTGCATCCAATAGTAATAGTTATTGTGAGGTAGCTGAGTTGTGGTATTCCCAATGAACAATTTGTTCGAAACTAAAGCAGACTCTTGAAACAGTGTATATTTTTTCAATCCAAACATAGCATTGTAGATAAAGGTACCTATTCCCATCTCAAAGGTTACAAAGGTCTATAGTCAATACATGCACAAAAGTCCATTTTTTCCATTGTTTTTCTTATTATTACAGTGGAACTTGTAGAATTTACAGAAGACTTAAAACAGGATAACTGTGTTTAAAAAGATTATAAATCTTTGTGTTGTGTAATTTTATTTCCTTGCGTCCTTTTGTTTTTTCGTTTTAGTTATTATATGTAACACTTCAGATCCTGCAGAACCTTCAAATTCCTAACATCTTTATCATAAAAGCAAATACCACTATGAAGCTTCTACACAAGTTGGAAGATTGTTGTAGAGAATGTCTTATTAGAGATTTTTATTGCCCAATTAAGTGAATTCTTGAGGCCCCAGTTAGCTAATTACAATGTTTTGTCGAAGGAAAATGTATGAGATTTATGTGATAAGTTTGTATCATGAAACTAAGTTACGATTTGGTTGATGACCAGGCGGCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGATGAGGACATTCCTAGTTAACCTGATCCAAAAGTTTGCCCTCACCAAAATGTTTAATGTTTTCTGATCAACTTTTGATTTTGGGAAGCTGTTAATTCTCTGTAATGTAAGTTATTTTCCATGTAGTATCTTCTTTAGTTGAGAAGTTTTTGCAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTACATATAATACCTGGCAAACACCTTAGAAAGATAATCTCCTAGATCCAGACAGTAAGAAATCTTTGTAGCTTATGAATTTGGAAGAGCTACATAATCCACCAGTATGTAGGCAATGCAGTTTGAGGATTCTGGTTCATGGACTGTTTGGTCCAAGGGATTTGGAAGGAGTTGGGGGAAGTGAAGTTGTGAATGGAAATTTGTACAGGGCCCAAAAATGCC

mRNA sequence

ACAAACTATTGGAATGGGAAACTTATCCACAAACAAAAAGAGATAGAGTGATAATCTCATCGTCAAGAGAGGTCTTCAATTTACAAACTTGAGAGCGAGAGAAGGACTGTGGGTTATTCGGAAGAAGAAAAAGGTAAAGTTCCATCAAAACTCAAATACAAGCAACAGATAAGACTGAACTCCAAGCACAGCCATCCATGGCTTCCCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCCAAGCCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGTCCAATCACGCCGCCCCTCAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAACCCTCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATTTGTCCCTCCCTAGCCTACGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGGTTGTGGATGATAATGAACCCGAGGAGCGCCTTCTTAACAGATTCCGGCGAGAGGTTATGCGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGCGGCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGATGAGGACATTCCTAGTTAACCTGATCCAAAAGTTTGCCCTCACCAAAATGTTTAATGTTTTCTGATCAACTTTTGATTTTGGGAAGCTGTTAATTCTCTGTAATGTAAGTTATTTTCCATGTAGTATCTTCTTTAGTTGAGAAGTTTTTGCAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTACATATAATACCTGGCAAACACCTTAGAAAGATAATCTCCTAGATCCAGACAGTAAGAAATCTTTGTAGCTTATGAATTTGGAAGAGCTACATAATCCACCAGTATGTAGGCAATGCAGTTTGAGGATTCTGGTTCATGGACTGTTTGGTCCAAGGGATTTGGAAGGAGTTGGGGGAAGTGAAGTTGTGAATGGAAATTTGTACAGGGCCCAAAAATGCC

Coding sequence (CDS)

ATGGCTTCCCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCCAAGCCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGTCCAATCACGCCGCCCCTCAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAACCCTCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATTTGTCCCTCCCTAGCCTACGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGGTTGTGGATGATAATGAACCCGAGGAGCGCCTTCTTAACAGATTCCGGCGAGAGGTTATGCGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGCGGCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGATGAGGACATTCCTAGTTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDEDIPS*

Homology

[Close]

BLAST of CSPI03G25620 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-36
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPN- 60
           MAS SS  +FL P  P           S P  SN   P   +L S+  S++++ ++  N 
Sbjct: 1   MASTSSLLNFLSPLFPSN--------TSLPPSSNPKFPNPNSLSSQQNSISISSKKHENA 60

Query: 61  ---HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGV 120
                E    +L +V+CPSLA++NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGV
Sbjct: 61  AIAKKEEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGV 120

Query: 121 IQECKRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWD 178
           IQECKRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNWD
Sbjct: 121 IQECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWD 175

[Close]

BLAST of CSPI03G25620 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 91  QVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 149
           QVVV  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of CSPI03G25620 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 92  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 148
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of CSPI03G25620 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 92  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 148
           V V +NEP E  L RF+R   +AGV+ E +RR ++E    VRKRK   A KR+ +R
Sbjct: 4   VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREYYEKPTQVRKRKQAAAVKRHMKR 59

[Close]

BLAST of CSPI03G25620 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.5e-94
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

Query: 181 IPS 184
           IPS
Sbjct: 188 IPS 190

[Close]

BLAST of CSPI03G25620 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.5e-94
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

Query: 181 IPS 184
           IPS
Sbjct: 181 IPS 183

[Close]

BLAST of CSPI03G25620 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 182

[Close]

BLAST of CSPI03G25620 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 174/182 (95.60%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ D
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IP 183
           IP
Sbjct: 229 IP 230

[Close]

BLAST of CSPI03G25620 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.2e-78
Identity = 161/182 (88.46%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSP+N AA QFQTLKSRDGSVAL+PQQ P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 180

[Close]

BLAST of CSPI03G25620 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

Query: 181 IPS 184
           IPS
Sbjct: 188 IPS 190

[Close]

BLAST of CSPI03G25620 vs. NCBI nr
Match: XP_004145671.1 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_017561 [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

Query: 181 IPS 184
           IPS
Sbjct: 181 IPS 183

[Close]

BLAST of CSPI03G25620 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 182

[Close]

BLAST of CSPI03G25620 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 174/182 (95.60%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ D
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IP 183
           IP
Sbjct: 229 IP 230

[Close]

BLAST of CSPI03G25620 vs. NCBI nr
Match: XP_038900112.1 (30S ribosomal protein S21, chloroplastic [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 6.7e-85
Identity = 170/184 (92.39%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH--AAPQFQTLKSRDGSVALNPQQGP 60
           MASLSSFFSFLLPSKPPPPKPHQP I SSPSP+NH  AA Q QTLKS+DGSV+L PQQGP
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIVSSPSPANHAAAAAQCQTLKSKDGSVSLKPQQGP 60

Query: 61  NHSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQ 120
           NHSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVLVDDNEPEERLLNRFRREVMRAGVIQ 120

Query: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPED 180
           ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+
Sbjct: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180

Query: 181 EDIP 183
           E+IP
Sbjct: 181 ENIP 184

[Close]

BLAST of CSPI03G25620 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39
Identity = 97/185 (52.43%), Postives = 131/185 (70.81%), Query Frame = 0


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSE 62
           SL+SF SF+ P K    KP  P   + PSP+       Q  ++     ++  ++  + + 
Sbjct: 6   SLTSFISFISPFK-SQTKPTPPPNLTLPSPTIS-----QRRRNDLAIESMAVEETSSTAS 65

Query: 63  PLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKR 122
            LS+ELASVICPSLAY+NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQECKR
Sbjct: 66  SLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKR 125

Query: 123 RRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLPED 182
           RR+FEN QD +KR+TR+AAKRN++RRPQARFT + +++  A     K++ ++DNW++P  
Sbjct: 126 RRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMP-G 183

Query: 183 EDIPS 184
            D+PS
Sbjct: 186 GDVPS 183

[Close]

BLAST of CSPI03G25620 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-21
Identity = 75/189 (39.68%), Postives = 110/189 (58.20%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           + SLS   S LL SKPP P   +P       PS+ +A   Q L      +         H
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITL----PSSVSARTSQHLSMTTKILT------AEH 65

Query: 61  SEPLSAELASVICPSLAYANTMFFRSA-YNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120
            + ++     V  PSLA AN +FF+S+ YNV+VV  D E EE+L+N F+R   RAGV+QE
Sbjct: 66  DDVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQE 125

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDV-----PATKQEADDDNWD 180
            +RRRFFE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  DD+W+
Sbjct: 126 SRRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWE 180

Query: 181 L-PEDEDIP 183
           L PED +IP
Sbjct: 186 LPPEDIEIP 180

[Close]

BLAST of CSPI03G25620 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-16
Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60
           + SLS   S LL SKPP P   +P       PS+ +A   Q L      +         H
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITL----PSSVSARTSQHLSMTTKILT------AEH 65

Query: 61  SEPLSAELASVICPSLAYANTMFFRSA-YNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120
            + ++     V  PSLA AN +FF+S+ YNV+VV  D E EE+L+N F+R   RAGV+QE
Sbjct: 66  DDVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQE 125

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRR 148
            +RRRFFE++ + + RKT+EAAK+ R+R
Sbjct: 126 SRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of CSPI03G25620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	7.8e-36	51.91	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	2.1e-04	48.28	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B8GPU0	4.6e-04	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]
A1WW12	7.9e-04	46.43	30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=...	[more]

BLAST of CSPI03G25620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q8VWX5	6.5e-94	100.00	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]
A0A0A0LDL7	6.5e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]
A0A5D3C287	2.2e-89	96.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	1.1e-88	95.60	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
A0A6J1J5C2	2.2e-78	88.46	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CSPI03G25620 vs. NCBI nr


Match Name	E-value	Identity	Description
AAL35983.1	1.3e-93	100.00	ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Pr...	[more]
XP_004145671.1	1.3e-93	100.00	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypotheti...	[more]
KAA0042889.1	4.5e-89	96.15	hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK0529...	[more]
XP_008450090.2	2.2e-88	95.60	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
XP_038900112.1	6.7e-85	92.39	30S ribosomal protein S21, chloroplastic [Benincasa hispida]	[more]

BLAST of CSPI03G25620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	1.2e-39	52.43	Ribosomal protein S21 family protein	[more]
AT5G63300.1	9.5e-21	39.68	Ribosomal protein S21 family protein	[more]
AT5G63300.2	3.2e-16	41.89	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 93..101 score: 43.52 coord: 101..110 score: 43.33 coord: 125..135 score: 37.88 coord: 113..123 score: 38.64
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 91..145 e-value: 1.7E-19 score: 69.3
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 90..147 e-value: 4.2E-13 score: 46.9
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..179
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 89..145 score: 14.068398
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 104..142 e-value: 2.3E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..183
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G25620.1	CSPI03G25620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome