CSPI03G24930 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G24930
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionmalic domain-containing protein
LocationChr3: 22113306 .. 22117294 (+)
RNA-Seq ExpressionCSPI03G24930
SyntenyCSPI03G24930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTTTCTTACATTTTTTATTAATAAACGTCAAGAAAGGAAAACTGGAAACGTCAAGAGAGCCTGTTTTTGTAGTAGTGTAAGTTTCAACTAATACTCTCAGTATTTATCTTTGTGCTTATGTGATAGATTTGTTATGCACTGTAGTGATGTGGGGTGTTTCCTTATTTTCTGCATCTTAACTACCTTATTTTCTGCATCTTAAATATCTTATATTCTGCATCTTAATTATCTTATATTCTGCATCTTAATTGGTACTGAAATTTGGTTTGTTTCAGTGAAAGAGGCACTATCAGCATTGACATGTACATGTGATTTTAAGCAAGAACCAGGAGAGTGAGAGTTTTAGTGTGCCGTGTTTAGAATTTGCCGTTATCTTTTTCCCGCTTCAGCAAGTATTCCTGATAGCGGGGTAACTCTCAAGTCTGTTGTCTTTTCTTCATGAAATTTGTAGACTATCTAAGAATACTAATATCATTTAATGGTGACATATTTTTAGCAACTTTTCTTAACCTCACTTTCTGAATTCCATTAAGTTTACTCTTGTTGAATTGACAGATTCTTCCAGTAATGCTAGATATTGGTTCTCACAACGAGAAGTCACTTAATGATCCTCTTTTTAGGTGAAAGGGAAACCTTCATGTCTTTTATCTCCATATTTTCCTTGTACTGTATTGTGCTTATATTGCTCTGTTTCTGCTGTCAATGGCGATATATTTGGGCTTTTTGTTGTTGTTGTAGTGGTTGTGGTGAAATATTTTATTTAAGCCTCTAGTTAATATTTATGTTTACTTAACAGAAAATTTGTTGCTTGAGCATAATGAAGTTAGCTCATACCCTGTCCCAGTTTCTAAACTTCCGTTCAATTAGCATCACGTGAGAGTTGTAACCTTTACGAGTTTGGTTGAAATTGAAGCTTATTTGATGTGCAGGAAACAGATAGGAGGTACTCTTTAGAAATTGAGATGGTTTTAATAGAGTTATGATTTAAATTAAAATTTCACTTTAGACTATGTACTTCTTAGGAGATATAGTTCTTATCAATGTTTTGATCAAATCTCACTGTGGCTGCTTGTGATGTTGGTCTTCCTGTCACAGGAGATAAAGTTGGAACGGGGCAAGGGCTTAGCTAAAAGACGAGAAGCAAAAGCTGAACTTATGGAGTTAGAACTCGAGAAAGATAGACCATTGGCACGGTCAAGGTAAAACTGAGCACTCTTGGTTTTCAATTTTATTTATACTTCTAGAATATCAAATAAATTAATCGGAAGGATACAAACATTATTTTACTCTTACCGGTGTGCCACTCTATTAGCTACACGTTGAATGGTTTAGGAAATGATACTCTCCAGTTTTATGTTTATTATCTTCTTTATCCTCTTTCCTTTTAGCATTGAAGAACTTTTGGACTACTGTTTTTAGCCATACAGACAATTTCCCACAAAATTTTGTTGTTTTTATTTGTTGAGTGATGCTACTTTTTCAAACTTTTATTATTTTATCATGGATTAGATTTGAGGATGCTTATAATATAATTTGTGTCCATTTTTCATCCTGATTGGTGGTTAACCTCAAATCCCATTTAGTCCTCGAAGCACCACAAACATTCTTGCTAAAGCAACCTTCTTTGTTACCCATTTTCATATTTGTTCTCATTTAGGTAGTTGGTCACTATGAATGGAATTTTATTCAATTTAGGAATTGATTTTATGGAGTACATGTACTTGCATTTTTCTGGAGTTGGGTTCATTTGTGAATGAGACTTGAATTATTGAAGTGTAGACTTAAATTATTCCTTACTGTGTCAATCTATATTTATGTTACTTTGTGGATAAATTTCTAAAGGAAATTTGGTTTGTTTTAGTGAATGAGGCACTATCAGTATTGACATGTACATGTGATTTTAAGCAAGGACCAAGAGAGTGAGAGTTTTAGTGTGTCGTGTTTCGAATTTGTCGGTATCTTTTTCCCGTTCCAGCAAGTATTCCTGATAGTGGGGGAAACCTTCAAGTCTGCCATTTTTTCTTCATGAAATTTGTAGATTATCTAAGAATACTAATAACATTTTTTTAGCAACTTTTCTTAACCCCACTTTCTGAATTTCATTAAGTTTACTCTTGTTTAATTGACATATTCTTCCAGTAATGCTAGATATTGGTTCTAACAACGAGAAGTTACTTAATGATCCTCTTTGTAAGTGAAAGGAAAACCTTCAGGTCTTTTATCTCCATACTTTCCTTGTAATGTATTGTGCTTATATTGCTCTGATTCTGTTGTCAATGGCGATATATCTAAGCTTTTTGTTGTTGTGGTGGTGGTGGTGGTGGTGGTGAAATATTTTATTTAAGCCTCTAGTTAACATTTATGTTTACTTAACAGAAAATTTGTTGCTTGACCTTGCTTCATTTCATCCTTTTACTTGTTTAAGTCCTCCTCTAACTAATTATACATTTCGTCCTTTTACTTGTTTAAGTCCTCCCGAAAGTATTCACTACTTCAATAAATTCCCTCACCAGCATCACCTCTTAGTCAACAAACTGTTTTTTCCCAAAATCAAAAAAGAAAAAGAAAAGAAAAAGATAAAAATAATCAGGAAATATCTTTCAAGTAATTGTGCTGAAATATCCTAAGATTACCTTCTTAGCTGACTTAGATCTTTTATAAAAATCATGACTGGCAACCCTTGACCACTCAGCTTGGGTTTGTGAGTGAGGTAAAAATCTGATTATTGATGAGTATACGTGCTGAAATTTGAGAATAAGCTGCTGTCTTTTATAGTTTAAGCCCCTTTTTAGCGATATCTTATTGAGACGCGAATGCATGATTGAGAAAATAATGTGTGTTGTGAATGCTTGATTGCATGTATATAATAAATAAGTGCATGGATACTTTTCTAGCTTTGTCTTCCTTTATTACTTTGCTGTGAGTTACCTATGATGCACTTGGTCCAAACCTAGCCTAGATAGAGTTAAAAAAGGATAGGAAATACTCTTTAGAAATTGAGATGGTTTTGACAAATTTGTCTTGTCAGGCAGGGTTTCTTTTTACGTGTTTTTTTTTTTTTTTTTGTGTCAAGTGTTATTTATGGGTAGTGCTCTTTAATTACTCAAACATTGTTCTTATTGGCACTTTACAGAGGATGCCTTTTAACTGTACATTTTGAGAGTGCTTTAAAATGTATTTATTTATTATTTATTATTGCTTATTCCTTTCAACCCCTTGACAAATTTTCTCTCAAATTTTTTAAATTGTCTGCATCTCTGTTATTTTTAGATGTTAAACAAAGAGCATTTCCACAGATCGGGGAGCATTCCTTAAAGGCGTTCAAATCAAAGGTTTAATGATATGATGCTCAACAAAGCTTTACACCTCTTTTTTTCACCAATGTGACATTTGGTGAGTAGGCTGGCACAGTGACCAAATTTAGAATTTAGTCTATGGATTGGATGGTTTTATCAAACCATAATCTATGGATTAGATGGTTTTATCAAGCCATAATCTATGGATTAGATGGTTTTATCAAACCATAAGGATTATTTAGAGATTTATCAAACCATAAGGATTATTTACAGATTTATCAAACCATAAGGATTATTTACACATTTATAAAACCATAAGGATAAAGTTCTAACTTTTACAACCAAATGGAATAAATTTATAGTGACCAAATTTGTAATTCATCTATTTCTTCTCCTTTATTCTTTTAGGTGAGAAATTTTTCTTATAATGGATGATTCTTCATACAACTTTTTAGCCATTTCAATTATCTCCACTTACCGACCTCTATAGGAATGGAGCTTGCATTTTGATTTTTGATAGTTGTTGTTCAGATATTGAAGATTATTTTTTATCTTATTAACCAAGACTGTTTTAAAATTTTCACGTGGATGTGCTAATTAGAGATTTGTGTACCTTTCAGGCCTCAAGTAATAATTGCAAGTGCCACGATGTTGTGCCGTCGGTTCTATATGCGTCAATCCCATGC

mRNA sequence

ATGAAATCTTTCTTACATTTTTTATTAATAAACGTCAAGAAAGGAAAACTGGAAACGTCAAGAGAGCCTGTTTTTGTAGTAGTCAAGAACCAGGAGAGTGAGAGTTTTAGTGTGCCGTGTTTAGAATTTGCCGTTATCTTTTTCCCGCTTCAGCAAGTATTCCTGATAGCGGGAGTTTTAGTGTTAATGCTAGATATTGGTTCTAACAACGAGAAGTTACTTAATGATCCTCTTTATGTTAAACAAAGAGCATTTCCACAGATCGGGGAGCATTCCTTAAAGGCGTTCAAATCAAAGGCCTCAAGTAATAATTGCAAGTGCCACGATGTTGTGCCGTCGGTTCTATATGCGTCAATCCCATGC

Coding sequence (CDS)

ATGAAATCTTTCTTACATTTTTTATTAATAAACGTCAAGAAAGGAAAACTGGAAACGTCAAGAGAGCCTGTTTTTGTAGTAGTCAAGAACCAGGAGAGTGAGAGTTTTAGTGTGCCGTGTTTAGAATTTGCCGTTATCTTTTTCCCGCTTCAGCAAGTATTCCTGATAGCGGGAGTTTTAGTGTTAATGCTAGATATTGGTTCTAACAACGAGAAGTTACTTAATGATCCTCTTTATGTTAAACAAAGAGCATTTCCACAGATCGGGGAGCATTCCTTAAAGGCGTTCAAATCAAAGGCCTCAAGTAATAATTGCAAGTGCCACGATGTTGTGCCGTCGGTTCTATATGCGTCAATCCCATGC

Protein sequence

MKSFLHFLLINVKKGKLETSREPVFVVVKNQESESFSVPCLEFAVIFFPLQQVFLIAGVLVLMLDIGSNNEKLLNDPLYVKQRAFPQIGEHSLKAFKSKASSNNCKCHDVVPSVLYASIPC
Homology
[Close]
BLAST of CSPI03G24930 vs. ExPASy TrEMBL
Match: A0A0A0KTS3 (malic domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G454720 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 29 KNQESESFSVPCLEFAVIFFPLQQVFLIAGVLVLMLDIGSNNEKLL 75
          +NQESESFSVPCLEFA IFFP QQVFLI G+L +MLDIGSNNE LL
Sbjct: 41 RNQESESFSVPCLEFADIFFPFQQVFLIVGILRVMLDIGSNNEMLL 86

[Close]
BLAST of CSPI03G24930 vs. NCBI nr
Match: XP_031740369.1 (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-11
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 30 NQESESFSVPCLEFAVIFFPLQQVFLIAGVLVLMLDIGSNNEKLLNDPL 79
          NQESESFSV CLEF  IFFP QQVFLI G+L  MLDIG+NNEKLLND L
Sbjct: 2  NQESESFSVSCLEFTDIFFPFQQVFLIVGILPAMLDIGTNNEKLLNDSL 50

[Close]
BLAST of CSPI03G24930 vs. NCBI nr
Match: XP_031740370.1 (uncharacterized protein LOC116403388 isoform X2 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-11
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 30 NQESESFSVPCLEFAVIFFPLQQVFLIAGVLVLMLDIGSNNEKLLNDPL 79
          NQESESFSV CLEF  IFFP QQVFLI G+L  MLDIG+NNEKLLND L
Sbjct: 2  NQESESFSVSCLEFTDIFFPFQQVFLIVGILPAMLDIGTNNEKLLNDSL 50

The following BLAST results are available for this feature:
BLAST of CSPI03G24930 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G24930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTS31.0e-1082.61malic domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G454720 PE=4 ... [more]
BLAST of CSPI03G24930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031740369.19.4e-1179.59NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform X1 [Cucumi... [more]
XP_031740370.19.4e-1179.59uncharacterized protein LOC116403388 isoform X2 [Cucumis sativus][more]
BLAST of CSPI03G24930 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G24930.1CSPI03G24930.1mRNA