CSPI03G24620 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCAGTTATTTAAGAGCTAAAAAAGCTCTTTCCCAACCAAAAAAGGCATAATGAACTACTAGAATACGACCCAAGCAAGCCAACCTATTGTCCACGAATGCAGTTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTAGCTTTTGAAGACACATAAGTTTTGTAGTTTAAGCAAAAGCTTAGTTCATTCACTCATTAATCTCAAAAATAATAAAAGATTCTCCATTCTCAATTCAATAAGGAATAAAAAGAAGAAAAGACGATAAAGGAGCTAGGTAATAAAAAGAAGAGAAGACGAGTCAAGAGGTTTTGATGATTGTAAAGACTATTACAAAGACCTGCAGAAACCTAAAAAGTACCAATGCTAAGAGAAAGAAGAGTATAGAATGAACGAGTCAATTCAATATGAACCTAGAAAAGTAGGCGTTTAAGATGAACCGAAAATCTTCAACAATATCCCTGGAGGGCATATCTGTGGAGAGGTAAGACGGAGGGTAGAGGTGGTGCTTAAGTTGCCTGGGATGAGGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTGGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAAGGGAGATCGCTCTTGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAATGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGCTTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAGGATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGGTGGGGGAAATATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTATTCTTTGTGGAGGGAACTATGAGTCTCGTGACCATTTGTTTTTTCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATACGGTATTGGGGGGTTGAGTTATCTTAGATTTGCAATTAGGGTATTGGGAAGGGTGTGAGGAGAAAATTGTGGCGCCTTCTCTGGTGTGCTACAATTTATTTCATTTGGCAGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCCAATTGAGTTCATGGTCTTATTTAGTGTGCTTTTCTTTTGCATGTCCTCGGGCTGTGGGGTTTTTTTTCTCTTTTTTGTCTTTGTTGTCTTTCTCTTTTCTTCTTGTCCTTTTATTGTTTGATACACTAGTTGGTTTCTTTTGGTTTTGGTTCTTGTCCCCGAGATGTGGGGTTGTTTTGGGTACTTATGGGTTGTTTTGTCTAGTTACTTGTTCTATGAGTGTTGTTCGCTCTTGTGCCTTGACCTCAGGCTGTGA ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCATTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTGGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAAGGGAGATCGCTCTTGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAATGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGCTTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAGGATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGGTGGGGGAAATATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTATTCTTTGTGGAGGGAACTATGAGTCTCGTGACCATTTGTTTTTTCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATACGGTATTGGGGGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCCAATTGAGTTCATGATGTGGGGTTGTTTTGGGTACTTATGGGTTGTTTTGTCTAGTTACTTGTTCTATGAGTGTTGTTCGCTCTTGTGCCTTGACCTCAGGCTGTGA ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCATTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTGGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAAGGGAGATCGCTCTTGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAATGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGCTTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAGGATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGGTGGGGGAAATATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTATTCTTTGTGGAGGGAACTATGAGTCTCGTGACCATTTGTTTTTTCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATACGGTATTGGGGGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCCAATTGAGTTCATGATGTGGGGTTGTTTTGGGTACTTATGGGTTGTTTTGTCTAGTTACTTGTTCTATGAGTGTTGTTCGCTCTTGTGCCTTGACCTCAGGCTGTGA MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLVPSVCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWGERNLRLHGGAVWEPMVIFQLIRSCIKVVLLLGPIEFMMWGCFGYLWVVLSSYLFYECCSLLCLDLRL* Homology
BLAST of CSPI03G24620 vs. ExPASy TrEMBL
Match: A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 1.5e-106 Identity = 190/320 (59.38%), Postives = 223/320 (69.69%), Query Frame = 0
BLAST of CSPI03G24620 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 2.1e-97 Identity = 180/326 (55.21%), Postives = 210/326 (64.42%), Query Frame = 0
BLAST of CSPI03G24620 vs. ExPASy TrEMBL
Match: A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 3.6e-97 Identity = 191/367 (52.04%), Postives = 223/367 (60.76%), Query Frame = 0
BLAST of CSPI03G24620 vs. ExPASy TrEMBL
Match: A0A5D3D7P6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00080 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97 Identity = 179/326 (54.91%), Postives = 210/326 (64.42%), Query Frame = 0
BLAST of CSPI03G24620 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 3.4e-95 Identity = 181/331 (54.68%), Postives = 210/331 (63.44%), Query Frame = 0
BLAST of CSPI03G24620 vs. NCBI nr
Match: XP_031737556.1 (uncharacterized protein LOC116402448 [Cucumis sativus]) HSP 1 Score: 511.5 bits (1316), Expect = 6.5e-141 Identity = 235/237 (99.16%), Postives = 235/237 (99.16%), Query Frame = 0
BLAST of CSPI03G24620 vs. NCBI nr
Match: XP_031737043.1 (uncharacterized protein LOC116402131 [Cucumis sativus]) HSP 1 Score: 443.0 bits (1138), Expect = 2.8e-120 Identity = 228/324 (70.37%), Postives = 239/324 (73.77%), Query Frame = 0
BLAST of CSPI03G24620 vs. NCBI nr
Match: XP_031745730.1 (uncharacterized protein LOC116406187 [Cucumis sativus]) HSP 1 Score: 408.3 bits (1048), Expect = 7.7e-110 Identity = 193/227 (85.02%), Postives = 201/227 (88.55%), Query Frame = 0
BLAST of CSPI03G24620 vs. NCBI nr
Match: KAA0042317.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK15441.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 396.4 bits (1017), Expect = 3.0e-106 Identity = 190/320 (59.38%), Postives = 223/320 (69.69%), Query Frame = 0
BLAST of CSPI03G24620 vs. NCBI nr
Match: XP_031745548.1 (uncharacterized protein LOC116405965 [Cucumis sativus]) HSP 1 Score: 374.0 bits (959), Expect = 1.6e-99 Identity = 179/241 (74.27%), Postives = 186/241 (77.18%), Query Frame = 0
BLAST of CSPI03G24620 vs. TAIR 10
Match: AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 120.6 bits (301), Expect = 3.0e-27 Identity = 86/274 (31.39%), Postives = 129/274 (47.08%), Query Frame = 0
BLAST of CSPI03G24620 vs. TAIR 10
Match: AT5G16486.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-25 Identity = 71/205 (34.63%), Postives = 99/205 (48.29%), Query Frame = 0
BLAST of CSPI03G24620 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 111.7 bits (278), Expect = 1.4e-24 Identity = 98/340 (28.82%), Postives = 138/340 (40.59%), Query Frame = 0
BLAST of CSPI03G24620 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 99.4 bits (246), Expect = 7.1e-21 Identity = 57/191 (29.84%), Postives = 85/191 (44.50%), Query Frame = 0
BLAST of CSPI03G24620 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 99.0 bits (245), Expect = 9.3e-21 Identity = 59/194 (30.41%), Postives = 83/194 (42.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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