CSPI03G24420 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G24420
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 21481515 .. 21482310 (-)
RNA-Seq ExpressionCSPI03G24420
SyntenyCSPI03G24420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAAGTTTTTCTGATGCTGAGACTGAAGATAATTATTTGGAGTCAAAATTTGAATCTCCCCAAATTTCATCCTCCAATAACTCAAAATGTGGAAGACAACAAGATGAAAGTTGGAATCCGGAGATGGAAGATCAGGAGTTGGAAGTATCAAACAAGTTTTAAAAAAATCATTTTCATTGGAATTGGACCGACCAATGTACCATCTTGGAGAATCTTTATGAATTTGCCTGTATCATACACAATACCATACCAAATCTACTCTACATATATTGTTAATTATTTACTTCTATTTGTATTTTATGTACACTATGATTCAGGGGAAAATGGGAGCTATTCAAAGGAGTTATTCTACCATTTTGTGAAGGGGAAGTTGAGTGTTGAGGTATCCAATTCTCAATTGTCAGACAAAGTATATAGGTTGAAGAAACGATTCATATTGATGAAGGCCAATAAATCTTGTGATAATAATAAAATGAGAACATTTTCAGATAGTAATTACAAGAAGTTGTTTGAGTTGTCGAGCAATATTTGGGGAGACGAGGAAAACCCTAAATTAAGTGAAGACCCATCTGGTCGGGGGTTCTATAATGATGAGAAAGTGTTTCAAATGGCACTTGAAAAGTTGAAGGTTGACATCACCTTCATTCCACCTCATGATTTGCAAAACATTAGAAAAGAATGGGAAGATGTGATGAGTGCTAGAAATGGTTATGAGTTGAAGTATGCTAAGTTACTTGAAGAAATCTCTGATATTAGATGCACTCAGACTCAAAATATATATAACTGTTGA

mRNA sequence

ATGGCAACAAGTTTTTCTGATGCTGAGACTGAAGATAATTATTTGGAGTCAAAATTTGAATCTCCCCAAATTTCATCCTCCAATAACTCAAAATGTGGAAGACAACAAGATGAAAGTTGGAATCCGGAGATGGAAGATCAGGAGTTGGAAGGGAAGTTGAGTGTTGAGGTATCCAATTCTCAATTGTCAGACAAAGTATATAGGTTGAAGAAACGATTCATATTGATGAAGGCCAATAAATCTTGTGATAATAATAAAATGAGAACATTTTCAGATAGTAATTACAAGAAGTTGTTTGAGTTGTCGAGCAATATTTGGGGAGACGAGGAAAACCCTAAATTAAGTGAAGACCCATCTGGTCGGGGGTTCTATAATGATGAGAAAGTGTTTCAAATGGCACTTGAAAAGTTGAAGGTTGACATCACCTTCATTCCACCTCATGATTTGCAAAACATTAGAAAAGAATGGGAAGATGTGATGAGTGCTAGAAATGGTTATGAGTTGAAGTATGCTAAGTTACTTGAAGAAATCTCTGATATTAGATGCACTCAGACTCAAAATATATATAACTGTTGA

Coding sequence (CDS)

ATGGCAACAAGTTTTTCTGATGCTGAGACTGAAGATAATTATTTGGAGTCAAAATTTGAATCTCCCCAAATTTCATCCTCCAATAACTCAAAATGTGGAAGACAACAAGATGAAAGTTGGAATCCGGAGATGGAAGATCAGGAGTTGGAAGGGAAGTTGAGTGTTGAGGTATCCAATTCTCAATTGTCAGACAAAGTATATAGGTTGAAGAAACGATTCATATTGATGAAGGCCAATAAATCTTGTGATAATAATAAAATGAGAACATTTTCAGATAGTAATTACAAGAAGTTGTTTGAGTTGTCGAGCAATATTTGGGGAGACGAGGAAAACCCTAAATTAAGTGAAGACCCATCTGGTCGGGGGTTCTATAATGATGAGAAAGTGTTTCAAATGGCACTTGAAAAGTTGAAGGTTGACATCACCTTCATTCCACCTCATGATTTGCAAAACATTAGAAAAGAATGGGAAGATGTGATGAGTGCTAGAAATGGTTATGAGTTGAAGTATGCTAAGTTACTTGAAGAAATCTCTGATATTAGATGCACTCAGACTCAAAATATATATAACTGTTGA

Protein sequence

MATSFSDAETEDNYLESKFESPQISSSNNSKCGRQQDESWNPEMEDQELEGKLSVEVSNSQLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSNYKKLFELSSNIWGDEENPKLSEDPSGRGFYNDEKVFQMALEKLKVDITFIPPHDLQNIRKEWEDVMSARNGYELKYAKLLEEISDIRCTQTQNIYNC*
Homology
BLAST of CSPI03G24420 vs. ExPASy TrEMBL
Match: A0A0A0L833 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G498910 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.8e-93
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0

Query: 1   MATSFSDAETEDNYLESKFESPQISSSNNSKCGRQQDESWNPEMEDQELEGKLSVEVSNS 60
           MATSFSDAETEDNYLESKFESPQISSSNNSKCGRQ+DESWNPEMEDQELEGKLSVEVSNS
Sbjct: 1   MATSFSDAETEDNYLESKFESPQISSSNNSKCGRQEDESWNPEMEDQELEGKLSVEVSNS 60

Query: 61  QLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSNYKKLFELSSNIWGDEENPKLSEDPSG 120
           QLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSNYKKLFELSSNIWGDEENPKLSEDPS 
Sbjct: 61  QLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSNYKKLFELSSNIWGDEENPKLSEDPSA 120

Query: 121 RGFYNDEKVFQMALEKLKVDITFIPPHDLQNIRKEWEDVMSARNGYELKYAKLLEEIS 179
           RGFYNDEKVFQMALEKLKVDITFIPPHDLQNIRKEWEDVMSARNGYELKYAKLLEEIS
Sbjct: 121 RGFYNDEKVFQMALEKLKVDITFIPPHDLQNIRKEWEDVMSARNGYELKYAKLLEEIS 178

BLAST of CSPI03G24420 vs. ExPASy TrEMBL
Match: A0A6J1DXL5 (probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111025442 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 0

Query: 49  LEGKLSVEVSNSQLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSN-YKKLFELSSNIWG 108
           ++ KLSV+VSNSQLSDKVYRL+KRF+       C       FS  N  +KL+E+S+NIWG
Sbjct: 94  VKNKLSVDVSNSQLSDKVYRLRKRFL----KDECKGKIRMKFSKGNQLEKLYEMSNNIWG 153

Query: 109 DEENPKLSEDPSGRGFYNDEKV-------FQMALEKLKVDITFIPPHDLQNIRKEWEDVM 168
              N + ++  SG   +  E V       F+  +E +KVDI+ IPP+ L +IRK+WE + 
Sbjct: 154 SNSNTQNTQ--SGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLXDIRKDWEQMK 213

Query: 169 SARNGYELKYAKLLEEISDIRCTQ 185
            A++ YELK A LL +IS IRCTQ
Sbjct: 214 MAQDEYELKNANLLLQISHIRCTQ 231

BLAST of CSPI03G24420 vs. NCBI nr
Match: XP_038877618.1 (STOREKEEPER protein-like [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-28
Identity = 82/152 (53.95%), Postives = 100/152 (65.79%), Query Frame = 0

Query: 49  LEGKLSVEVSNSQLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSNYKKLFELSSNIWG- 108
           ++GKLS EVSNSQLS KVYRL+KRF+  K N + +NN    F D   +K+FELS NIWG 
Sbjct: 45  VKGKLSGEVSNSQLSTKVYRLRKRFMKNKRNDNNNNNMREKFPD---EKVFELSRNIWGD 104

Query: 109 DEENPKLS---EDPSGRGFYN------------DEKVFQMALEKLKVDITFIPPHDLQNI 168
           D+ENPK +     PS     N             EK F++ LE +K+D+T IP H L+++
Sbjct: 105 DQENPKSTIGGGGPSSSSSINIIQWKPEEVERFYEKRFKIFLENMKLDVTSIPTHVLEDV 164

Query: 169 RKEWEDVMSARNGYELKYAKLLEEISDIRCTQ 185
           RKEWEDV  ARN YELK A LLEEISDIRCTQ
Sbjct: 165 RKEWEDVRRARNDYELKNADLLEEISDIRCTQ 193

BLAST of CSPI03G24420 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-21
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 0

Query: 49  LEGKLSVEVSNSQLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSN-YKKLFELSSNIWG 108
           ++ KLSV+VSNSQLSDKVYRL+KRF+       C       FS  N  +KL+E+S+NIWG
Sbjct: 94  VKNKLSVDVSNSQLSDKVYRLRKRFL----KDECKGKIRMKFSKGNQLEKLYEMSNNIWG 153

Query: 109 DEENPKLSEDPSGRGFYNDEKV-------FQMALEKLKVDITFIPPHDLQNIRKEWEDVM 168
              N + ++  SG   +  E V       F+  +E +KVDI+ IPP+ L +IRK+WE + 
Sbjct: 154 SNSNTQNTQ--SGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLXDIRKDWEQMK 213

Query: 169 SARNGYELKYAKLLEEISDIRCTQ 185
            A++ YELK A LL +IS IRCTQ
Sbjct: 214 MAQDEYELKNANLLLQISHIRCTQ 231

BLAST of CSPI03G24420 vs. NCBI nr
Match: KAG6607617.1 (hypothetical protein SDJN03_00959, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-07
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 0

Query: 83  DNNKMRTFSDSNYKKLFELSSNIWGDEENPKLS----EDPSGRGFYNDEKVFQMALEKLK 142
           D+ + +  SDS+ +   E  +  W  ++  K S    +  +   +Y   K+F+M  + LK
Sbjct: 8   DDERTKLASDSSKRGREEEETLSWDTKKESKKSKKMWKSEAVHKWYG--KMFRMYFKHLK 67

Query: 143 VDITFIPPHDLQNIRKEWEDVMSARNGYELKYAKLLEEISDIRCTQTQNI 189
           +D++ I P+ LQ +RK+WED+++A++ Y+LK AKLL EISDIR  ++QNI
Sbjct: 68  MDMSCIQPNLLQTLRKDWEDMLTAKHEYQLKNAKLLVEISDIR--RSQNI 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8339.8e-9398.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G498910 PE=3 SV=1[more]
A0A6J1DXL52.0e-2146.53probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111... [more]
Match NameE-valueIdentityDescription
XP_038877618.11.2e-2853.95STOREKEEPER protein-like [Benincasa hispida][more]
XP_022158998.14.2e-2146.53probable transcription factor At4g01260 [Momordica charantia][more]
KAG6607617.12.0e-0737.27hypothetical protein SDJN03_00959, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007592GLABROUS1 enhancer-binding protein familyPFAMPF04504DUF573coord: 47..107
e-value: 1.1E-10
score: 42.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G24420.1CSPI03G24420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated