CSPI03G24370 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G24370
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	F-box domain-containing protein
Location	Chr3: 21452070 .. 21453721 (-)
RNA-Seq Expression	CSPI03G24370
Synteny	CSPI03G24370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCAAATTGGTTCCATGCAATAGCACACATAACTCCCACGTGTCACCAATAAAATCCCCCGCTCTATAAATAATCAAATTAATCCAATCCTCACCTAACCGATATCTTTCCCAGCGCTTCTTCATGGCACAACCTCTTCCCTCACTTTCTTCTTCACCACCGCCGTGGGAGGTGATTCTTCTCGTCGCCGAACGGCTCGACCCCAAAACCCTGGCCACCGCCTCCTGCGTTTGCAAGTCTTGGTCCCTTTCCATGGCCTCCGACCACCTTTGGGAGCCTATTTTCACCGCTAATTTCCCTTCTCTCTTTAACCTTGCAACCGCCCCGGCCACGTCACCACACGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCTACATTGCTGCCGCTCGCCGCCGTCCCGCTCAGTCGAAACCTTCTCTTTCCCTCTCCGACCTCGTCTTTGTTATTAGTATTTCCTTCACCAACAAAGATAGGTGTAGTATTGCTTGTGACGGAGTGAATAAAGAAGAAAAAGGTAATCTTTAGTGCTTTTAACACATTGAGAAGCTACGTTATATATAACATAGGGTCCGTTGGGTTGATTCTAAGACTTGGTAACCTTTATTTTTTTCTTTTAACTTAAGTAAAAATTATACAAAAAATCTAAAGATAGTTTTTAATTTAATTTTTTAAAAAGCAAACATCATCGATGCATCTCACCAACAATTTTCAATTATAACGTTGACACGTCTCGTACTGGGTGTGATGTCGCATGCACACATGTATTGCCCATTTTTTATTTCGGTTTGAGTGGGTCTACTCCTTATCTCAACCTGAACTAAACACTTTAGCAAAAACGATCGAACTGGTAAAATGATTATTTTCTTTCCTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTGCCATTTTTGCTTAATTGGTAAGTAAATGGGCATTTTGCTGTATACATGAAAAGAACTTTAGGAGTTATTATTTGCAAAATTTCACAGGTTTATAAAAAGTTAAGGGTAGTAAAAGACCTAAAGGCTAAAACATTCTCTCTCTTTTCCCGATAAAATCAATCCAAAAGTTTGGAAAGTAATAAACGTAACTTTTATTTTTATTTACTTATTTTGCTTATTACTAAAAAATTCTAGCTAGAATTCGAATGTATATATAATTCTTTATTACATGAAAACTTGTAGCTCCGAGGCCACAATCCAGCCTCACCATCGTGAAGCATGGCGAGGAGCTACCCGTAGATCGAAATGGACTATTCAAATTCGACATAAATCTCAACGAGAATGGGGACGGTGCTCCGGTGGTCATTGGAGCGAGAGAGGAGGTGGAGGTGGTATGGAACATAGTGTTAGAAGGGTGGAGGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCTAGAGCGGATGGGTGGTTCTCGGAGGAGCTTCCGGCAGCGGGGTGCTGCCCGAACGTCGTGAGTGGCGGCATTGTGGGGGATTTGAGACTAGGGTTGTGTGGAAATGGAGGAGGGAGTAATAAGGTTAGGATTGAAAGTGTGAGTGTAGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGCTTAGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCTAACGTCTAG

mRNA sequence

GTGGCAAATTGGTTCCATGCAATAGCACACATAACTCCCACGTGTCACCAATAAAATCCCCCGCTCTATAAATAATCAAATTAATCCAATCCTCACCTAACCGATATCTTTCCCAGCGCTTCTTCATGGCACAACCTCTTCCCTCACTTTCTTCTTCACCACCGCCGTGGGAGGTGATTCTTCTCGTCGCCGAACGGCTCGACCCCAAAACCCTGGCCACCGCCTCCTGCGTTTGCAAGTCTTGGTCCCTTTCCATGGCCTCCGACCACCTTTGGGAGCCTATTTTCACCGCTAATTTCCCTTCTCTCTTTAACCTTGCAACCGCCCCGGCCACGTCACCACACGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCTACATTGCTGCCGCTCGCCGCCGTCCCGCTCAGTCGAAACCTTCTCTTTCCCTCTCCGACCTCGTCTTTGTTATTAGTATTTCCTTCACCAACAAAGATAGGTGTAGTATTGCTTGTGACGGAGTGAATAAAGAAGAAAAAGCTCCGAGGCCACAATCCAGCCTCACCATCGTGAAGCATGGCGAGGAGCTACCCGTAGATCGAAATGGACTATTCAAATTCGACATAAATCTCAACGAGAATGGGGACGGTGCTCCGGTGGTCATTGGAGCGAGAGAGGAGGTGGAGGTGGTATGGAACATAGTGTTAGAAGGGTGGAGGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCTAGAGCGGATGGGTGGTTCTCGGAGGAGCTTCCGGCAGCGGGGTGCTGCCCGAACGTCGTGAGTGGCGGCATTGTGGGGGATTTGAGACTAGGGTTGTGTGGAAATGGAGGAGGGAGTAATAAGGTTAGGATTGAAAGTGTGAGTGTAGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGCTTAGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCTAACGTCTAG

Coding sequence (CDS)

ATGGCACAACCTCTTCCCTCACTTTCTTCTTCACCACCGCCGTGGGAGGTGATTCTTCTCGTCGCCGAACGGCTCGACCCCAAAACCCTGGCCACCGCCTCCTGCGTTTGCAAGTCTTGGTCCCTTTCCATGGCCTCCGACCACCTTTGGGAGCCTATTTTCACCGCTAATTTCCCTTCTCTCTTTAACCTTGCAACCGCCCCGGCCACGTCACCACACGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCTACATTGCTGCCGCTCGCCGCCGTCCCGCTCAGTCGAAACCTTCTCTTTCCCTCTCCGACCTCGTCTTTGTTATTAGTATTTCCTTCACCAACAAAGATAGGTGTAGTATTGCTTGTGACGGAGTGAATAAAGAAGAAAAAGCTCCGAGGCCACAATCCAGCCTCACCATCGTGAAGCATGGCGAGGAGCTACCCGTAGATCGAAATGGACTATTCAAATTCGACATAAATCTCAACGAGAATGGGGACGGTGCTCCGGTGGTCATTGGAGCGAGAGAGGAGGTGGAGGTGGTATGGAACATAGTGTTAGAAGGGTGGAGGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCTAGAGCGGATGGGTGGTTCTCGGAGGAGCTTCCGGCAGCGGGGTGCTGCCCGAACGTCGTGAGTGGCGGCATTGTGGGGGATTTGAGACTAGGGTTGTGTGGAAATGGAGGAGGGAGTAATAAGGTTAGGATTGAAAGTGTGAGTGTAGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGCTTAGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCTAACGTCTAG

Protein sequence

MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV*

Homology

[Close]

BLAST of CSPI03G24370 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.3e-23
Identity = 78/272 (28.68%), Postives = 130/272 (47.79%), Query Frame = 0


Query: 11  SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLATAPAT 70
           SPP WE++ LV   +DP++LA ASCV  +WS   +S+ LW+ +            T    
Sbjct: 51  SPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGA 110

Query: 71  SP-HVSFRRLFGLGYIAAARRRPAQ-SKPSLSLSDLVFVISISFTNKDRCSIACDGVNKE 130
            P  +S++RL      AA RRR  Q ++P +SLSDLVF++ +S  +K+            
Sbjct: 111 KPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE------------ 170

Query: 131 EKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEVVWNIVLEG 190
                      +VK G++L    N  F+ + ++ ++G  A +     ++V + WN+VL  
Sbjct: 171 ---------AVVVKQGKDLVFGSNERFQIEADVRDSGFTADM-----KDVSMSWNVVLRN 230

Query: 191 WRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSG-GIVGDLRLGLCGNGGGSNK 250
           +  +F M E    +       GWF++ELP  G       G  +VG+++          N+
Sbjct: 231 YERMFLMSET--VIKSLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF-------NE 285

Query: 251 VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFL 280
             ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 291 DVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

[Close]

BLAST of CSPI03G24370 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 5.1e-162
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120
           LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI
Sbjct: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120

Query: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180

Query: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
           VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 285
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 284

[Close]

BLAST of CSPI03G24370 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.1e-151
Identity = 269/284 (94.72%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120
           LFNLA+AP +SP VSFRRLFGLGYIAAARRRPAQ KP+LSLSDLVFVISISFT+KD+  I
Sbjct: 61  LFNLASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSII 120

Query: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLT+VKHGEELPV+RNGLFKFDINLNENG  APVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENG-AAPVVIGAREEVEV 180

Query: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
           VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 285
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

[Close]

BLAST of CSPI03G24370 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.1e-151
Identity = 269/284 (94.72%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120
           LFNLA+AP +SP VSFRRLFGLGYIAAARRRPAQ KP+LSLSDLVFVISISFT+KD+  I
Sbjct: 61  LFNLASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSII 120

Query: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLT+VKHGEELPV+RNGLFKFDINLNENG  APVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENG-AAPVVIGAREEVEV 180

Query: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
           VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 285
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

[Close]

BLAST of CSPI03G24370 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.9e-111
Identity = 217/284 (76.41%), Postives = 237/284 (83.45%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60

Query: 61  LFNLATAPA-TSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCS 120
           L NLA + A TSP VSFRRLFGLG+ AAARRRPA SKP LSLSDLVFVIS+S T+K    
Sbjct: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGC 120

Query: 121 IACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVE 180
           I   G  KEEK   P+   T+VKHG EL VDRN LFKFDIN++ NGD   VVIGA EEVE
Sbjct: 121 IVSGGTKKEEK-DVPEPMFTVVKHGGELAVDRNRLFKFDINVS-NGDEV-VVIGAGEEVE 180

Query: 181 VVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240
           VVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240

Query: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 282
             G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 KNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of CSPI03G24370 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.9e-109
Identity = 215/284 (75.70%), Postives = 237/284 (83.45%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS+HLWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPS 60

Query: 61  LFNLATAPAT-SPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCS 120
           L NLA + AT SP +SF RLFGLG+ AAARRRPA SKP LSLSDL+FVIS+S T+K    
Sbjct: 61  LTNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGC 120

Query: 121 IACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVE 180
           I   G  KEEK   P+   TIVKHG EL VDRNGLFKFDIN+++ GD A VVIGA  EVE
Sbjct: 121 IVGGGATKEEK-DVPELMFTIVKHGGELVVDRNGLFKFDINVSK-GDEA-VVIGAGGEVE 180

Query: 181 VVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240
           VVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240

Query: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 282
             G GG +++VRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 KNGEGGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of CSPI03G24370 vs. NCBI nr
Match: XP_031740421.1 (probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical protein Csa_018886 [Cucumis sativus])

HSP 1 Score: 580.1 bits (1494), Expect = 1.0e-161
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120
           LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI
Sbjct: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120

Query: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180

Query: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
           VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 285
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 284

[Close]

BLAST of CSPI03G24370 vs. NCBI nr
Match: XP_008449214.1 (PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putative F-box protein [Cucumis melo var. makuwa] >TYK21759.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 545.8 bits (1405), Expect = 2.2e-151
Identity = 269/284 (94.72%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120
           LFNLA+AP +SP VSFRRLFGLGYIAAARRRPAQ KP+LSLSDLVFVISISFT+KD+  I
Sbjct: 61  LFNLASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSII 120

Query: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLT+VKHGEELPV+RNGLFKFDINLNENG  APVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENG-AAPVVIGAREEVEV 180

Query: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
           VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 285
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

[Close]

BLAST of CSPI03G24370 vs. NCBI nr
Match: XP_038883618.1 (probable F-box protein At5g04010 [Benincasa hispida])

HSP 1 Score: 454.5 bits (1168), Expect = 6.6e-124
Identity = 236/288 (81.94%), Postives = 256/288 (88.89%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MA PLPSL SSPPPWEV+LLVAERLDPKTLATASCVCK WS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAPPLPSL-SSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPS 60

Query: 61  LFNLA--TAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRC 120
           L NLA  ++  TSP VSFRRLFGLG+ AAARRRPA SKP+LSLSDL+FVISIS T+KDR 
Sbjct: 61  LSNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRY 120

Query: 121 SIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLN-ENGD-GAPVVIGARE 180
            +  + V K +KAP PQS LT+VKHG EL VDRNGLFKFDINL+ +NG+ G PVVIG RE
Sbjct: 121 IVGHELVEK-DKAP-PQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGRE 180

Query: 181 EVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRL 240
           EVEVVWN+VLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCC NVVSGGIV DL+L
Sbjct: 181 EVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKL 240

Query: 241 GLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 285
           GL GN GG +KVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLFNA+V
Sbjct: 241 GLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 285

[Close]

BLAST of CSPI03G24370 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 410.2 bits (1053), Expect = 1.4e-110
Identity = 217/284 (76.41%), Postives = 237/284 (83.45%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60

Query: 61  LFNLATAPA-TSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCS 120
           L NLA + A TSP VSFRRLFGLG+ AAARRRPA SKP LSLSDLVFVIS+S T+K    
Sbjct: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGC 120

Query: 121 IACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVE 180
           I   G  KEEK   P+   T+VKHG EL VDRN LFKFDIN++ NGD   VVIGA EEVE
Sbjct: 121 IVSGGTKKEEK-DVPEPMFTVVKHGGELAVDRNRLFKFDINVS-NGDEV-VVIGAGEEVE 180

Query: 181 VVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240
           VVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240

Query: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 282
             G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 KNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of CSPI03G24370 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.5 bits (1046), Expect = 9.3e-110
Identity = 215/285 (75.44%), Postives = 238/285 (83.51%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60

Query: 61  LFNLATAPA-TSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNK-DRC 120
           L NLA + A TSP VSFRRLFGLG+ AAARRRPA SKP L LSDLVFVIS+S T+K DRC
Sbjct: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRC 120

Query: 121 SIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEV 180
            +   G  KEEK   P+   T+VKHG EL VDRNGLFKFDIN++ + +   VVIGA EEV
Sbjct: 121 IVGA-GAKKEEK-DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDE--VVVIGAGEEV 180

Query: 181 EVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGL 240
            VVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+
Sbjct: 181 GVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGV 240

Query: 241 C--GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 282
           C  G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 CKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of CSPI03G24370 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-24
Identity = 78/272 (28.68%), Postives = 130/272 (47.79%), Query Frame = 0


Query: 11  SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLATAPAT 70
           SPP WE++ LV   +DP++LA ASCV  +WS   +S+ LW+ +            T    
Sbjct: 51  SPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGA 110

Query: 71  SP-HVSFRRLFGLGYIAAARRRPAQ-SKPSLSLSDLVFVISISFTNKDRCSIACDGVNKE 130
            P  +S++RL      AA RRR  Q ++P +SLSDLVF++ +S  +K+            
Sbjct: 111 KPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE------------ 170

Query: 131 EKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEVVWNIVLEG 190
                      +VK G++L    N  F+ + ++ ++G  A +     ++V + WN+VL  
Sbjct: 171 ---------AVVVKQGKDLVFGSNERFQIEADVRDSGFTADM-----KDVSMSWNVVLRN 230

Query: 191 WRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSG-GIVGDLRLGLCGNGGGSNK 250
           +  +F M E    +       GWF++ELP  G       G  +VG+++          N+
Sbjct: 231 YERMFLMSET--VIKSLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF-------NE 285

Query: 251 VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFL 280
             ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 291 DVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

The following BLAST results are available for this feature:

BLAST of CSPI03G24370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	5.3e-23	28.68	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of CSPI03G24370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDE5	5.1e-162	100.00	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]
A0A5D3DEJ6	1.1e-151	94.72	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	1.1e-151	94.72	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A6J1EEG3	6.9e-111	76.41	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	2.9e-109	75.70	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]

BLAST of CSPI03G24370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740421.1	1.0e-161	100.00	probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical pr...	[more]
XP_008449214.1	2.2e-151	94.72	PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putativ...	[more]
XP_038883618.1	6.6e-124	81.94	probable F-box protein At5g04010 [Benincasa hispida]	[more]
XP_022925168.1	1.4e-110	76.41	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
XP_023518459.1	9.3e-110	75.44	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI03G24370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	3.7e-24	28.68	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 8..95 e-value: 9.9E-8 score: 33.8
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 9..268
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 14..52 e-value: 5.9E-5 score: 22.8
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 9..268
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 14..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G24370.1	CSPI03G24370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding