CSPI03G24220 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G24220
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionZinc-binding ribosomal protein family protein
LocationChr3: 21320099 .. 21323141 (+)
RNA-Seq ExpressionCSPI03G24220
SyntenyCSPI03G24220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGGAATATTCAATCACAAGATTCTCCTGGCCTTGAAGATGCCGGAGAAGGCGTGGGAACAGCTTGCTTTATGCTGCTGTCCTGTAGCGGACTGTGCTTCACTCGCAGAGCTGGGAACGCGCAAGAAGGCTACTGGGTCATTGCCGCTGTGGTAGGCAAAAACCAGGTGAGGAAGGGGGTCTGGCGGCTGTGAGATTAAGGGGAGGTGTAGACATTGGATTAATCTCCCAATGGCTGATGTTGGTGGTAGATATGCCGAGACTAAAATAGTAGCATCAGTAAAATTCATTGTTAAAAGTTGGTTCATTGGTGTTTGAAGAAAGAAATATCCTAGATTTACATTATTTCTTTGCAATTGGCACAAAGGGTATACATGGAGGGAAAATGACGCCAAATACAAACGATTATTATTGGGAGGTGTTACCTTTCCAGACGTCAATTTGGTCTAGCGTCAGACAATAGTTTTCTTTTTAAAGTAAATTTAAGTAAATCAATCAATTTTATAAAATATAGCAAAATAATAATAATAATAACAACAACAATAAAAAGAGTTATAGAAATTTTAATGAATTTTACTTTGTAAACAATTTAAATATTGATAACATCCCCTACCTTTAATTAATTTTCTTACGTGACATAGAACTTAGTTTCACGAAGTTAATTACAATTACAAAATATCCACGAAGCATAAATATACAGTTATATAATATCCAAAACATATATCTTAATTCTTCTCTACTTCTTTGTTTGAACATTTTGTTATATATATATATATATATAAAGAATTTAAATGGTATCACTACTACCAAATTTACCCCTGTAACAATAGCAACCACTTTAATCTCAAACTTAAATTTAGAAACTATACTTTTACAAATACATCAAAGTCACAATATCAAGTGCATTATAATTAAACTCAAGCTTGAACATAATTATACATTTCCATCTGAATCAAATTTCAAACTCAATATAAAACTTTAAATTAAACCTAATAACATTAATAACTTCAAATAATACTTGAAATGTGACTTTAATAGCAATTATGTAAATTTAGGGTATTAACGAGCCTTTAGAGTTTTAGAAAACTCTTTTCTAACGTCATTTGTAACATCAGGAAATTAGTTTCTTCCCACATTTTTTTAAAAACCAATATGGAAAGCTATGACAAGTTCTGATGAGGCTGTTTAGACTCAATATAGCTTAAAAAATGATGTTAGCAAATGTGACTTATCCCCAACATGTGTATAGTGTTGAGATAACTCTCAAATAAACAGTCTCTCACCTTATTTTTCTCCAACACCTACGAAAATTTGGTCGAGAATGCCACACTATTCCAATGGTAAAAAAAATGTGTTCTCCCTGCGCTTTTAAAACCATCTAGAAAAATTTGATAGTAAAAGACAAAATATTATTAGTGTTTCTAAATTAAATTACTATCAAACTTAAGAATAACAATAACCACAAAAACTAATAACTTATTCCACTTACTCCACGTTAGTTTTACTATCATATCTAATTACATTTTCAAGTGTTTAATTTAGAAAATAAATTTTTTAAAAGAAAACTAATTTGGAAAGGAGTATTTTAAACATTTTTTATCTAAAAGATTTTAAATAAGAAAGAGTTTTTGAAAAACAATTTTTTGTTTAAGTAAATCAAATCGTACTCTTTTGAGTTTTTTAGATGAGGTTGATACAAGATTACGTGAAAGCAGAAGTTATAATATAAAGACAAATATAAGTAAAATTTAAAATTTCTAGTTGGGCTTCTTCGTGTGCATTGGGAGGCCCATTCTCAGGCACAAAAGACCCAAATCTTTCCACACCAACCCGACCCACCAGAGAAGTCTCGGGTAGGTCAAAGCAAAACGGGTCCGGAATTTCTTGGAACCCTAAACCCTCGCAATATAAACTCTGCCGCCTACTTCCTCCTTCTCTTTGGACGGTACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGTAATCACTCTCTTCCCTTTCTACATCATTGCGCCTTGAATTCAAAATTTGAGTGCGCTAATCGTCTTGTTTGTTGATCGGTAATTAGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGTCGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATGTAAGTTCGCTTAATCACTTTGTATTTTGAGTTGTTTCATCATTGTACGATTAAATCCTTGTAACTCTAGATCTCCCAGAATCGACCCAGATAGTAGTAGATTCGTTCTGAGTGTCCTAATCTGTTTAAATGATTTTTTTTTTTTTTTTACTTTTGGGTCGTCAATTTTGGTTTAGTTTTTCGTTTCTCTTATGGTGGTTTTTGGATTTAGATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATATTTGCGCCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTAGAAGTTTAATTTGTGTAATTCTTGCAGTTTTACTTATTAATTAACGTGATTATTTTATTTTTTGTGGGATTTTTTTAATTTTAAGTTCGTTCGGTTCTGTGATTAGGTACTGAAGCAGCGCCAAGGAGCAAAGGAGCCTCATCATCAGCCTAAGACATTGAAGGTTAATTGTGGCACAACTTGGTACCTTATATAGCTTCTAGGAGGATTTTATCATTTTTGGGACTAGAGTTTATAAGAATTTTGTTTGATGATGTTATTGCCTGCAATACTGAAGCTTGTTTTTATTTCTTACTCTTTTGTTTATGGAATTTCTGATAATTGTTTTCAGACCACTTTCACCTTTGGTTAATCTATGTCTTGAGTTATATACTTCTAAGTTCCAACCATGTTAGAAGGTATTGCTGGTAGATATTGTTACTCTGAATGCCAGGGTGGAAACTATTAGTGAGAAATTTGCGTGTTGAGATCATGCGTTGATGTTTGAGTTGTTTCTTATTCTTGGTCGCAGC

mRNA sequence

ATGTGTTGGAATATTCAATCACAAGATTCTCCTGGCCTTGAAGATGCCGGAGAAGGCGTGGGAACAGCTTGCTTTATGCTGCTGTCCTGTAGCGGACTGTGCTTCACTCGCAGAGCTGGGAACGCGCAAGAAGGCTACTGGGTCATTGCCGCTGTGGTAGGCAAAAACCAGGCCCATTCTCAGGCACAAAAGACCCAAATCTTTCCACACCAACCCGACCCACCAGAGAAGTCTCGGGTAGGTCAAAGCAAAACGGGTCCGGAATTTCTTGGAACCCTAAACCCTCGCAATATAAACTCTGCCGCCTACTTCCTCCTTCTCTTTGGACGGTACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGTCGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATATTTGCGCCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTGAAGCAGCGCCAAGGAGCAAAGGAGCCTCATCATCAGCCTAAGACATTGAAGGTTAATTGTGGCACAACTTGGTACCTTATATAGCTTCTAGGAGGATTTTATCATTTTTGGGACTAGAGTTTATAAGAATTTTGTTTGATGATGTTATTGCCTGCAATACTGAAGCTTGTTTTTATTTCTTACTCTTTTGTTTATGGAATTTCTGATAATTGTTTTCAGACCACTTTCACCTTTGGTTAATCTATGTCTTGAGTTATATACTTCTAAGTTCCAACCATGTTAGAAGGTATTGCTGGTAGATATTGTTACTCTGAATGCCAGGGTGGAAACTATTAGTGAGAAATTTGCGTGTTGAGATCATGCGTTGATGTTTGAGTTGTTTCTTATTCTTGGTCGCAGC

Coding sequence (CDS)

ATGTGTTGGAATATTCAATCACAAGATTCTCCTGGCCTTGAAGATGCCGGAGAAGGCGTGGGAACAGCTTGCTTTATGCTGCTGTCCTGTAGCGGACTGTGCTTCACTCGCAGAGCTGGGAACGCGCAAGAAGGCTACTGGGTCATTGCCGCTGTGGTAGGCAAAAACCAGGCCCATTCTCAGGCACAAAAGACCCAAATCTTTCCACACCAACCCGACCCACCAGAGAAGTCTCGGGTAGGTCAAAGCAAAACGGGTCCGGAATTTCTTGGAACCCTAAACCCTCGCAATATAAACTCTGCCGCCTACTTCCTCCTTCTCTTTGGACGGTACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGTCGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGA

Protein sequence

MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQAHSQAQKTQIFPHQPDPPEKSRVGQSKTGPEFLGTLNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLELGG*
Homology
[Close]
BLAST of CSPI03G24220 vs. ExPASy TrEMBL
Match: A0A6A5ND91 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00003251 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 125 VREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLEL 184
           VRE+ VSV+GGTRPT SV GVA  AS  +RVDAP     L  S +ITG  R S  RP EL
Sbjct: 9   VREQVVSVRGGTRPTPSVYGVAAAASTFKRVDAPLALTPLHASENITGVLRPSVERPQEL 68

[Close]
BLAST of CSPI03G24220 vs. ExPASy TrEMBL
Match: A0A7J0G090 (Zinc-binding ribosomal protein family protein OS=Actinidia rufa OX=165716 GN=Acr_16g0007810 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.4e-04
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0 

Query: 93  LNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASIS 152
           LN ++++S+    LL    R   V S+++ +W +E+  SV+GGTRPT S  GVA  A IS
Sbjct: 18  LNLQSLHSSPVISLL----RRLGVLSASAQQWGKEQGASVRGGTRPTHSACGVAAAAFIS 77

Query: 153 RRVDAPPVHFQLLVSVHITGASRRSE 179
           RR DA  V F L    H  G  +  +
Sbjct: 78  RRADARLVLFPLPAKEHCEGDPKEDD 99

[Close]
BLAST of CSPI03G24220 vs. NCBI nr
Match: KAE8650732.1 (hypothetical protein Csa_023396 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 8.3e-99
Identity = 186/200 (93.00%), Postives = 186/200 (93.00%), Query Frame = 0 

Query: 1   MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQ--- 60
           MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQ   
Sbjct: 1   MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQNLV 60

Query: 61  -----------AHSQAQKTQIFPHQPDPPEKSRVGQSKTGPEFLGTLNPRNINSAAYFLL 120
                      AHSQAQKTQIFPHQPDPPEKSRVGQSKTGPEFLGTLNPRNINSAAYFLL
Sbjct: 61  SRIGLLRVHWEAHSQAQKTQIFPHQPDPPEKSRVGQSKTGPEFLGTLNPRNINSAAYFLL 120

Query: 121 LFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLV 180
           LFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLV
Sbjct: 121 LFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLV 180

Query: 181 SVHITGASRRSEGRPLELGG 187
           SVHITGASRRSEGRPLELGG
Sbjct: 181 SVHITGASRRSEGRPLELGG 200

[Close]
BLAST of CSPI03G24220 vs. NCBI nr
Match: KAF1883069.1 (hypothetical protein Lal_00003251 [Lupinus albus])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-05
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 125 VREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLEL 184
           VRE+ VSV+GGTRPT SV GVA  AS  +RVDAP     L  S +ITG  R S  RP EL
Sbjct: 9   VREQVVSVRGGTRPTPSVYGVAAAASTFKRVDAPLALTPLHASENITGVLRPSVERPQEL 68

[Close]
BLAST of CSPI03G24220 vs. NCBI nr
Match: PPD96169.1 (hypothetical protein GOBAR_DD06803 [Gossypium barbadense])

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-04
Identity = 34/51 (66.67%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 126 REREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRR 177
           RE  V VK GTRPTLS LGVA VASISRR  A PV   LLV  HI  A RR
Sbjct: 5   REHGVLVKEGTRPTLSALGVATVASISRRAIALPVLSLLLVRGHIVKAIRR 55

The following BLAST results are available for this feature:
BLAST of CSPI03G24220 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G24220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5ND911.2e-0558.33Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00003251 PE=4 SV=1[more]
A0A7J0G0906.4e-0439.53Zinc-binding ribosomal protein family protein OS=Actinidia rufa OX=165716 GN=Acr... [more]
BLAST of CSPI03G24220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650732.18.3e-9993.00hypothetical protein Csa_023396 [Cucumis sativus][more]
KAF1883069.12.4e-0558.33hypothetical protein Lal_00003251 [Lupinus albus][more]
PPD96169.14.5e-0466.67hypothetical protein GOBAR_DD06803 [Gossypium barbadense][more]
BLAST of CSPI03G24220 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G24220.1CSPI03G24220.1mRNA