|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGAGTCGTCTTTTCCTCTTCAAGGAGCAATACGTGCTATTAAACTCTCGGAGCAGTGAATTGGAACGGTACTTGGTGTTGTAGCGAAACAAAAACCGGTATACAGTGATGACGGCGATGGCGGAGACGCGGAGGCCGACGATGGAAAGGAAATAGAAAAGACAGAAATCACAGAGCCCTGGAACGCCATTGTTAACATCTCAATTGTGAGGTGTGGTTGGGCGGAGGAGAAGAAGAAAGCAAATAGCCACGTCGGAAGCGTAGACCGATGAATGGAGGTGCCAAATGGGTTGGGATGAGGACAAACAAGAAATAGAATCCGACGGTGATAATTTAAAATGCAGATGGGATTGGATTCCTTGGACGATGACGATTCCCTTTGGGGCAGATCCAAAAAGGTGTGA mRNA sequence ATGGCGAGTCGTCTTTTCCTCTTCAAGGAGCAATACGTGCTATTAAACTCTCGGAGCAGTGAATTGGAACGTGATGACGGCGATGGCGGAGACGCGGAGGCCGACGATGGAAAGGAAATAGAAAAGACAGAAATCACAGAGCCCTGGAACGCCATTGTTAACATCTCAATTGTGAGGTGTGGTTGGGCGGAGGAGAAGAAGAAAGCAAATAGCCACGTCGGAAGCATGGGATTGGATTCCTTGGACGATGACGATTCCCTTTGGGGCAGATCCAAAAAGGTGTGA Coding sequence (CDS) ATGGCGAGTCGTCTTTTCCTCTTCAAGGAGCAATACGTGCTATTAAACTCTCGGAGCAGTGAATTGGAACGTGATGACGGCGATGGCGGAGACGCGGAGGCCGACGATGGAAAGGAAATAGAAAAGACAGAAATCACAGAGCCCTGGAACGCCATTGTTAACATCTCAATTGTGAGGTGTGGTTGGGCGGAGGAGAAGAAGAAAGCAAATAGCCACGTCGGAAGCATGGGATTGGATTCCTTGGACGATGACGATTCCCTTTGGGGCAGATCCAAAAAGGTGTGA Protein sequence MASRLFLFKEQYVLLNSRSSELERDDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRCGWAEEKKKANSHVGSMGLDSLDDDDSLWGRSKKV*
Homology
BLAST of CSPI03G24180 vs. ExPASy TrEMBL
Match: A0A0A0LDD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483750 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 4.2e-44 Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0
Query: 1 MASRLFLFKEQYVLLNSRSSELERDDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRC 60
MASRLFLFKEQYV LNS SSELERDDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRC
Sbjct: 5 MASRLFLFKEQYVQLNSGSSELERDDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRC 64
Query: 61 GWAEEKKKANSHVGSMGLDSLDDDDSLWGRSKKV 95
GWAEEKKKANSHVGSMGLDSLDDDDSLWGRSKKV
Sbjct: 65 GWAEEKKKANSHVGSMGLDSLDDDDSLWGRSKKV 98
BLAST of CSPI03G24180 vs. NCBI nr
Match: KAE8650734.1 (hypothetical protein Csa_024010, partial [Cucumis sativus]) HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20 Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0
Query: 25 DDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRCGWAEEKKKANSHVGSM 77
DDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRCGWAEEKKKANSHVGS+
Sbjct: 8 DDGDGGDAEADDGKEIEKTEITEPWNAIVNISIVRCGWAEEKKKANSHVGSV 59
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LDD3 | 4.2e-44 | 97.87 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483750 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650734.1 | 2.3e-20 | 98.08 | hypothetical protein Csa_024010, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 70..94 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 19..43 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
