CSPI03G24030 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G24030
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase
Location	Chr3: 21103428 .. 21104591 (-)
RNA-Seq Expression	CSPI03G24030
Synteny	CSPI03G24030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGTCCTACCCAAGGTCAGTCTGTAGGGGAATCTAGTACCCCAAGAGTTCCACTAGGGGCAGGAAACGAGCAGTTTGCGAGAACTACACAAGAAATAGGAAGGCTGGAGAGAGCAGAGCCTAGTGATCTAGAAAAGGCATATGGAATTGAACGGCTAAAGAAGTTAGGGGCTACAGTGTTTGAGGGTTCCACAAATCAAGCTAAGGCAGAGAATTGGTTGAATATGCGCGAAATTTTTTTTGACGTGATGAATTGTCCTGAGGAGCGAAAGGTTACATTGGCCACATTTTTGTTGTAGAAGGAGGCTGAAGGATGGTGGAAATCTATATTAGCTAGGTGCAACGATGCATGTACTTTAGACTTGCAGACTTTTAGAGGCATGTTCGAAGATAAGTATTATCTCAGCACATACGGTGAGGCCAAGAGGGATGCGTTTCTGGGTTTGAAACAAGGATCACTTTCAGTGGCAGAGTATGAGAGAAAGTATACTGAGCTTTCACGGTATACTGATGTTATTGTGGCATTTGAAAGTGAAAGGTGTCGAAGCTTTGAAACAGGGTTGCATTTTGAAATACGTACCCTAGTTACATCCATTGCTAAGTGGACGAATTTTTCTCAGTTAGTTGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAAAAGAGAAATCAACAGTGGAGCTTAGTCGTGGAGCTTCAACAGTTAGTGGTTTTAGAGGTCGTGAGCAGTAGAGATTCACACCTAGGGTAAATATTTCAAGCAGTCAAGACTTTAAGAATCGGTTTGGAGGCCAAGCATCGAGAAACATGAGTTATGGTAGTGTTTTTTAGAGACAGAGCCAGAGCATACCGAGTCAATCCACTAGATCAACAGTAAGACCGCAACTAGGTAAGGAGTTCGTTGCTAGTACTAATACGCGAACCCCATGCACGAGTTGTGGTAAGAACCATCGAGGTCAATGTTTAGTGGGTGTCAGTGTGTGTTACCAGTGTGGATAGTCAGAACATTTCAAGAAAGATTGCCCACAGTTGAACATGACAGTTCAAAAAACTCAAGGAGTTGGGTCTCAAACAGTTGAGCAATCGAGAGTTTCAGTGGTTCCGACAGAGGGCACCAGTGGTGCAAAGCAAAAGGGAGTTGTTGGAAGACCTAGGCAATAG

mRNA sequence

ATGCAAGGTCCTACCCAAGGTCAGTCTGTAGGGGAATCTAGTACCCCAAGAGTTCCACTAGGGGCAGGAAACGAGCAGTTTGCGAGAACTACACAAGAAATAGGAAGGCTGGAGAGAGCAGAGCCTAGTGATCTAGAAAAGGCATATGGAATTGAACGGCTAAAGAAGTTAGGGGCTACAGTGTTTGAGGGTTCCACAAATCAAGCTAAGGCAGAGAATTGGTTGAATATGCGCGAAATTTTTTTTGACGTGATGAATTGTCCTGAGGAGCGAAAGAAGGAGGCTGAAGGATGGTGGAAATCTATATTAGCTAGGTGCAACGATGCATGTACTTTAGACTTGCAGACTTTTAGAGGCATGTTCGAAGATAAGTATTATCTCAGCACATACGGTGAGGCCAAGAGGGATGCGTTTCTGGGTTTGAAACAAGGATCACTTTCAGTGGCAGAGTATGAGAGAAAGTATACTGAGCTTTCACGGTATACTGATGTTATTGTGGCATTTGAAAGTGAAAGGTGTCGAAGCTTTGAAACAGGGTTGCATTTTGAAATACGTACCCTAGTTACATCCATTGCTAAGTGGACGAATTTTTCTCAGTTAGTTGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAAAAGAGAAATCAACAGTGGAGCTTAGTCGTGGAGCTTCAACAAGACAGAGCCAGAGCATACCGAGTCAATCCACTAGATCAACAGTAAGACCGCAACTAGGTAAGGAGTTCGTTGCTAGTACTAATACGCGAACCCCATGCACGAGTTGTGTTCAAAAAACTCAAGGAGTTGGGTCTCAAACAGTTGAGCAATCGAGAGTTTCAGTGGTTCCGACAGAGGGCACCAGTGGTGCAAAGCAAAAGGGAGTTGTTGGAAGACCTAGGCAATAG

Coding sequence (CDS)

ATGCAAGGTCCTACCCAAGGTCAGTCTGTAGGGGAATCTAGTACCCCAAGAGTTCCACTAGGGGCAGGAAACGAGCAGTTTGCGAGAACTACACAAGAAATAGGAAGGCTGGAGAGAGCAGAGCCTAGTGATCTAGAAAAGGCATATGGAATTGAACGGCTAAAGAAGTTAGGGGCTACAGTGTTTGAGGGTTCCACAAATCAAGCTAAGGCAGAGAATTGGTTGAATATGCGCGAAATTTTTTTTGACGTGATGAATTGTCCTGAGGAGCGAAAGAAGGAGGCTGAAGGATGGTGGAAATCTATATTAGCTAGGTGCAACGATGCATGTACTTTAGACTTGCAGACTTTTAGAGGCATGTTCGAAGATAAGTATTATCTCAGCACATACGGTGAGGCCAAGAGGGATGCGTTTCTGGGTTTGAAACAAGGATCACTTTCAGTGGCAGAGTATGAGAGAAAGTATACTGAGCTTTCACGGTATACTGATGTTATTGTGGCATTTGAAAGTGAAAGGTGTCGAAGCTTTGAAACAGGGTTGCATTTTGAAATACGTACCCTAGTTACATCCATTGCTAAGTGGACGAATTTTTCTCAGTTAGTTGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAAAAGAGAAATCAACAGTGGAGCTTAGTCGTGGAGCTTCAACAAGACAGAGCCAGAGCATACCGAGTCAATCCACTAGATCAACAGTAAGACCGCAACTAGGTAAGGAGTTCGTTGCTAGTACTAATACGCGAACCCCATGCACGAGTTGTGTTCAAAAAACTCAAGGAGTTGGGTCTCAAACAGTTGAGCAATCGAGAGTTTCAGTGGTTCCGACAGAGGGCACCAGTGGTGCAAAGCAAAAGGGAGTTGTTGGAAGACCTAGGCAATAG

Protein sequence

MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGATVFEGSTNQAKAENWLNMREIFFDVMNCPEERKKEAEGWWKSILARCNDACTLDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESERCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGASTRQSQSIPSQSTRSTVRPQLGKEFVASTNTRTPCTSCVQKTQGVGSQTVEQSRVSVVPTEGTSGAKQKGVVGRPRQ*

Homology

[Close]

BLAST of CSPI03G24030 vs. ExPASy TrEMBL
Match: A0A5D3E424 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold924G00130 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.6e-118
Identity = 249/358 (69.55%), Postives = 261/358 (72.91%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  G GNEQFARTTQEIGR +RAEPSD EKAYGIERLKK GAT
Sbjct: 16  MQGPTQGSSVGESSTLGVRGGVGNEQFARTTQEIGRSDRAEPSDPEKAYGIERLKKFGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDSADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVIVA ES 
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESN 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKW NFSQLVETALR+EQSITKEKS VELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWMNFSQLVETALRLEQSITKEKSAVELSRGTSTASGFR 255

Query: 241 ---------RQSQSIPSQSTRSTVRPQLGKEFVASTNTRTPCTSC--------------- 300
                    RQSQ IPSQ  RSTVR Q G+E +AST  +TPCTSC               
Sbjct: 256 GCEQRSVFQRQSQRIPSQPIRSTVRSQTGQESIASTVRQTPCTSCGRNHRGQCLVGVGVC 315

Query: 301 -------------------VQKTQGVGSQTVEQSRVSVVPTEGTSGAKQKGVVGRPRQ 302
                              VQ+ QGVGSQTVEQSRVSVVPTEGTSGA++KGVVGRPRQ
Sbjct: 316 YQYGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARKKGVVGRPRQ 373

[Close]

BLAST of CSPI03G24030 vs. ExPASy TrEMBL
Match: A0A5A7TLH7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00900 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 2.4e-117
Identity = 247/364 (67.86%), Postives = 263/364 (72.25%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  GAGNEQFARTTQEIGR +RAEPSD EKAYGIERLKKLGAT
Sbjct: 54  MQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYGIERLKKLGAT 113

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 114 VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 173

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYT+LSRY DVI+A+ES+
Sbjct: 174 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTKLSRYADVIIAYESD 233

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSI +EKS VELSRG ST     
Sbjct: 234 RCRRFERGLRFEIRTPVTTIAKWTNFSQLVETALRVEQSIAEEKSAVELSRGTSTASGFR 293

Query: 241 ---------------RQSQSIPSQSTRSTVRPQLGKEFVASTNTRTPCTSC--------- 300
                          RQSQ IPSQ  R+TVR Q G+E +AS   R PCTSC         
Sbjct: 294 GRQASRNVSYGSVFQRQSQRIPSQPIRTTVRSQPGQESIASIVRRIPCTSCGRNHRGQCL 353

Query: 301 -------------------------VQKTQGVGSQTVEQSRVSVVPTEGTSGAKQKGVVG 302
                                    VQ+ QGVGSQT+EQSRVSVVPTEGTSGA+QKGVVG
Sbjct: 354 VGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVG 413

[Close]

BLAST of CSPI03G24030 vs. ExPASy TrEMBL
Match: A0A5A7TP97 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001420 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.5e-116
Identity = 252/387 (65.12%), Postives = 265/387 (68.48%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG S+GESST  V  GAGNEQFARTTQEIGRL+RAEPSD EKAYGIERLKKLGAT
Sbjct: 16  MQGPTQGPSIGESSTLGVRGGAGNEQFARTTQEIGRLDRAEPSDPEKAYGIERLKKLGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLGTFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVI+A +S+
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASKSD 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSITKEKSTVELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITKEKSTVELSRGTSTASGFR 255

Query: 241 --------------------------------------RQSQSIPSQSTRSTVRPQLGKE 300
                                                 RQSQ IPSQ  RSTVR Q G+E
Sbjct: 256 GREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQE 315

Query: 301 FVASTNTRTPCTSC----------------------------------VQKTQGVGSQTV 302
            +AST  R PCTSC                                  VQ+ QGVGSQTV
Sbjct: 316 SIASTVRRIPCTSCGRNHWGQCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTV 375

[Close]

BLAST of CSPI03G24030 vs. ExPASy TrEMBL
Match: A0A5D3BZJ4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00240 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.6e-116
Identity = 252/387 (65.12%), Postives = 264/387 (68.22%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  GAGNEQFARTTQEIGR +RAEPSD EKAYGIERLKKLGAT
Sbjct: 16  MQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYGIERLKKLGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVI+A ES+
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESD 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSIT+EKS VELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFR 255

Query: 241 --------------------------------------RQSQSIPSQSTRSTVRPQLGKE 300
                                                 RQSQ IPSQ  RSTVR Q G+E
Sbjct: 256 GREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQE 315

Query: 301 FVASTNTRTPCTSC----------------------------------VQKTQGVGSQTV 302
            +AST  R PCTSC                                  VQ+ QGVGSQTV
Sbjct: 316 SIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCLQLNMTVQRDQGVGSQTV 375

[Close]

BLAST of CSPI03G24030 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 3.4e-116
Identity = 251/387 (64.86%), Postives = 264/387 (68.22%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  GAGNEQFARTTQEIGR +RAEPSD EKAYGIERLKKLGAT
Sbjct: 16  MQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYGIERLKKLGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVI+A ES+
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESD 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSIT+EKS VELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFR 255

Query: 241 --------------------------------------RQSQSIPSQSTRSTVRPQLGKE 300
                                                 RQSQ IPSQ  RSTVR Q G+E
Sbjct: 256 GREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQE 315

Query: 301 FVASTNTRTPCTSC----------------------------------VQKTQGVGSQTV 302
            +AST  R PCTSC                                  VQ+ QGVGSQT+
Sbjct: 316 SIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTI 375

[Close]

BLAST of CSPI03G24030 vs. NCBI nr
Match: TYK30559.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 434.5 bits (1116), Expect = 7.5e-118
Identity = 249/358 (69.55%), Postives = 261/358 (72.91%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  G GNEQFARTTQEIGR +RAEPSD EKAYGIERLKK GAT
Sbjct: 16  MQGPTQGSSVGESSTLGVRGGVGNEQFARTTQEIGRSDRAEPSDPEKAYGIERLKKFGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDSADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVIVA ES 
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESN 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKW NFSQLVETALR+EQSITKEKS VELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWMNFSQLVETALRLEQSITKEKSAVELSRGTSTASGFR 255

Query: 241 ---------RQSQSIPSQSTRSTVRPQLGKEFVASTNTRTPCTSC--------------- 300
                    RQSQ IPSQ  RSTVR Q G+E +AST  +TPCTSC               
Sbjct: 256 GCEQRSVFQRQSQRIPSQPIRSTVRSQTGQESIASTVRQTPCTSCGRNHRGQCLVGVGVC 315

Query: 301 -------------------VQKTQGVGSQTVEQSRVSVVPTEGTSGAKQKGVVGRPRQ 302
                              VQ+ QGVGSQTVEQSRVSVVPTEGTSGA++KGVVGRPRQ
Sbjct: 316 YQYGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARKKGVVGRPRQ 373

[Close]

BLAST of CSPI03G24030 vs. NCBI nr
Match: KAA0042295.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 431.8 bits (1109), Expect = 4.9e-117
Identity = 247/364 (67.86%), Postives = 263/364 (72.25%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  GAGNEQFARTTQEIGR +RAEPSD EKAYGIERLKKLGAT
Sbjct: 54  MQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYGIERLKKLGAT 113

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 114 VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 173

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYT+LSRY DVI+A+ES+
Sbjct: 174 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTKLSRYADVIIAYESD 233

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSI +EKS VELSRG ST     
Sbjct: 234 RCRRFERGLRFEIRTPVTTIAKWTNFSQLVETALRVEQSIAEEKSAVELSRGTSTASGFR 293

Query: 241 ---------------RQSQSIPSQSTRSTVRPQLGKEFVASTNTRTPCTSC--------- 300
                          RQSQ IPSQ  R+TVR Q G+E +AS   R PCTSC         
Sbjct: 294 GRQASRNVSYGSVFQRQSQRIPSQPIRTTVRSQPGQESIASIVRRIPCTSCGRNHRGQCL 353

Query: 301 -------------------------VQKTQGVGSQTVEQSRVSVVPTEGTSGAKQKGVVG 302
                                    VQ+ QGVGSQT+EQSRVSVVPTEGTSGA+QKGVVG
Sbjct: 354 VGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVG 413

[Close]

BLAST of CSPI03G24030 vs. NCBI nr
Match: KAA0045363.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 429.1 bits (1102), Expect = 3.2e-116
Identity = 252/387 (65.12%), Postives = 265/387 (68.48%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG S+GESST  V  GAGNEQFARTTQEIGRL+RAEPSD EKAYGIERLKKLGAT
Sbjct: 16  MQGPTQGPSIGESSTLGVRGGAGNEQFARTTQEIGRLDRAEPSDPEKAYGIERLKKLGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLGTFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVI+A +S+
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASKSD 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSITKEKSTVELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITKEKSTVELSRGTSTASGFR 255

Query: 241 --------------------------------------RQSQSIPSQSTRSTVRPQLGKE 300
                                                 RQSQ IPSQ  RSTVR Q G+E
Sbjct: 256 GREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQE 315

Query: 301 FVASTNTRTPCTSC----------------------------------VQKTQGVGSQTV 302
            +AST  R PCTSC                                  VQ+ QGVGSQTV
Sbjct: 316 SIASTVRRIPCTSCGRNHWGQCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTV 375

[Close]

BLAST of CSPI03G24030 vs. NCBI nr
Match: TYK03606.1 (uncharacterized protein E5676_scaffold1369G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 5.4e-116
Identity = 252/387 (65.12%), Postives = 264/387 (68.22%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  GAGNEQFARTTQEIGR +RAEPSD EKAYGIERLKKLGAT
Sbjct: 16  MQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYGIERLKKLGAT 75

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 76  VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 135

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVI+A ES+
Sbjct: 136 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESD 195

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSIT+EKS VELSRG ST     
Sbjct: 196 RCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFR 255

Query: 241 --------------------------------------RQSQSIPSQSTRSTVRPQLGKE 300
                                                 RQSQ IPSQ  RSTVR Q G+E
Sbjct: 256 GREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQE 315

Query: 301 FVASTNTRTPCTSC----------------------------------VQKTQGVGSQTV 302
            +AST  R PCTSC                                  VQ+ QGVGSQTV
Sbjct: 316 SIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCLQLNMTVQRDQGVGSQTV 375

[Close]

BLAST of CSPI03G24030 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.9 bits (1099), Expect = 7.0e-116
Identity = 251/387 (64.86%), Postives = 264/387 (68.22%), Query Frame = 0


Query: 1   MQGPTQGQSVGESSTPRVPLGAGNEQFARTTQEIGRLERAEPSDLEKAYGIERLKKLGAT 60
           MQGPTQG SVGESST  V  GAGNEQFARTTQEIGR +RAEPSD EKAYGIERLKKLGAT
Sbjct: 54  MQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYGIERLKKLGAT 113

Query: 61  VFEGSTNQAKAENWLNMREIFFDVMNCPEERK---------KEAEGWWKSILARCNDACT 120
           VFEGST+ A AENWLNM E  FDVMNCPEERK         KEAEGWWKSILAR +DA  
Sbjct: 114 VFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARA 173

Query: 121 LDLQTFRGMFEDKYYLSTYGEAKRDAFLGLKQGSLSVAEYERKYTELSRYTDVIVAFESE 180
           LD QTFRG+FEDKYY STY EAKRD FLGLKQGSLSVAEYERKYTELSRY DVI+A ES+
Sbjct: 174 LDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESD 233

Query: 181 RCRSFETGLHFEIRTLVTSIAKWTNFSQLVETALRVEQSITKEKSTVELSRGAST----- 240
           RCR FE GL FEIRT VT+IAKWTNFSQLVETALRVEQSIT+EKS VELSRG ST     
Sbjct: 234 RCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFR 293

Query: 241 --------------------------------------RQSQSIPSQSTRSTVRPQLGKE 300
                                                 RQSQ IPSQ  RSTVR Q G+E
Sbjct: 294 GREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQE 353

Query: 301 FVASTNTRTPCTSC----------------------------------VQKTQGVGSQTV 302
            +AST  R PCTSC                                  VQ+ QGVGSQT+
Sbjct: 354 SIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTI 413

The following BLAST results are available for this feature:

BLAST of CSPI03G24030 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G24030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E424	3.6e-118	69.55	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TLH7	2.4e-117	67.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7TP97	1.5e-116	65.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5D3BZJ4	2.6e-116	65.12	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U2V7	3.4e-116	64.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of CSPI03G24030 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30559.1	7.5e-118	69.55	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0042295.1	4.9e-117	67.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0045363.1	3.2e-116	65.12	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK03606.1	5.4e-116	65.12	uncharacterized protein E5676_scaffold1369G00240 [Cucumis melo var. makuwa]	[more]
KAA0066849.1	7.0e-116	64.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G24030 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 94..180 e-value: 1.8E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 63..270
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 63..270

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G24030.1	CSPI03G24030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity