CSPI03G23940 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G23940
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	Chr3: 21023463 .. 21023996 (-)
RNA-Seq Expression	CSPI03G23940
Synteny	CSPI03G23940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACCTTAGCCCTCTCACCGACGGGTTTATTGACTCCCTTGGATATCCCTAGTAGAATATGGGAGGACATATCTATGGATTTCATCGAAGGCCTGCCCAAGTCCGGTGGATATGAGGTGATTTTTGTGGTGGTTGATCGTTTTAGCAAGTATGCCCATTTTCTGGGGCTTAAACATCCGTTTGATGCCAAGACAGTAGCAGACGTATTTGTGAAAGAAGTTGTAAGATTACACGGTTTTCCACAGTCAATAGTTTCTAACCGTGATAAGATCTTTATGAGCAATTTTTGGAAGGAGTTGTTTCGTTTGGTAGGCACAAAACTGAATCGGAGTACCGCATATCACCCTCAAACGGATGGCCAGACCGAGGTTGTTAACAGGTCAGTAGAGATTTACTTAAGGTGCTTTTGTGGAGAACGTCCAAAGGAATGGATGAAGTGGATTCCTTGGGCTGAATATTGGTATAATACCACATATCAGCGTTCCTTAGGAGTATCCCCCTTTCAAGCAGTATACGGACGTGCCTGTTAA

mRNA sequence

ATGAAAACCTTAGCCCTCTCACCGACGGGTTTATTGACTCCCTTGGATATCCCTAGTAGAATATGGGAGGACATATCTATGGATTTCATCGAAGGCCTGCCCAAGTCCGGTGGATATGAGGTGATTTTTGTGGTGGTTGATCGTTTTAGCAAGTATGCCCATTTTCTGGGGCTTAAACATCCGTTTGATGCCAAGACAGTAGCAGACGTATTTGTGAAAGAAGTTGTAAGATTACACGGTTTTCCACAGTCAATAGTTTCTAACCGTGATAAGATCTTTATGAGCAATTTTTGGAAGGAGTTGTTTCGTTTGGTAGGCACAAAACTGAATCGGAGTACCGCATATCACCCTCAAACGGATGGCCAGACCGAGGTTGTTAACAGGTCAGTAGAGATTTACTTAAGGTGCTTTTGTGGAGAACGTCCAAAGGAATGGATGAAGTGGATTCCTTGGGCTGAATATTGGTATAATACCACATATCAGCGTTCCTTAGGAGTATCCCCCTTTCAAGCAGTATACGGACGTGCCTGTTAA

Coding sequence (CDS)

ATGAAAACCTTAGCCCTCTCACCGACGGGTTTATTGACTCCCTTGGATATCCCTAGTAGAATATGGGAGGACATATCTATGGATTTCATCGAAGGCCTGCCCAAGTCCGGTGGATATGAGGTGATTTTTGTGGTGGTTGATCGTTTTAGCAAGTATGCCCATTTTCTGGGGCTTAAACATCCGTTTGATGCCAAGACAGTAGCAGACGTATTTGTGAAAGAAGTTGTAAGATTACACGGTTTTCCACAGTCAATAGTTTCTAACCGTGATAAGATCTTTATGAGCAATTTTTGGAAGGAGTTGTTTCGTTTGGTAGGCACAAAACTGAATCGGAGTACCGCATATCACCCTCAAACGGATGGCCAGACCGAGGTTGTTAACAGGTCAGTAGAGATTTACTTAAGGTGCTTTTGTGGAGAACGTCCAAAGGAATGGATGAAGTGGATTCCTTGGGCTGAATATTGGTATAATACCACATATCAGCGTTCCTTAGGAGTATCCCCCTTTCAAGCAGTATACGGACGTGCCTGTTAA

Protein sequence

MKTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGRAC*

Homology

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BLAST of CSPI03G23940 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-31
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 10   GLLTPLDIPSRIWEDISMDFIEGL-PKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVA 69
            GLL PL I    W DISMDF+ GL P S    +I VVVDRFSK AHF+  +   DA  + 
Sbjct: 1157 GLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLI 1216

Query: 70   DVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVNR 129
            D+  + +   HGFP++I S+RD    ++ ++EL + +G K   S+A HPQTDGQ+E   +
Sbjct: 1217 DLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQ 1276

Query: 130  SVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYG 175
            ++   LR +     + W  ++P  E+ YN+T  R+LG SPF+   G
Sbjct: 1277 TLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLG 1322

[Close]

BLAST of CSPI03G23940 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-31
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 10   GLLTPLDIPSRIWEDISMDFIEGL-PKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVA 69
            GLL PL I    W DISMDF+ GL P S    +I VVVDRFSK AHF+  +   DA  + 
Sbjct: 1183 GLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLI 1242

Query: 70   DVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVNR 129
            D+  + +   HGFP++I S+RD    ++ ++EL + +G K   S+A HPQTDGQ+E   +
Sbjct: 1243 DLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQ 1302

Query: 130  SVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYG 175
            ++   LR +     + W  ++P  E+ YN+T  R+LG SPF+   G
Sbjct: 1303 TLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLG 1348

[Close]

BLAST of CSPI03G23940 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 8    PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTV 67
            P G L P+    R WE +SMDFI  LP+S GY  +FVVVDRFSK A  +       A+  
Sbjct: 970  PYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQT 1029

Query: 68   ADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVN 127
            A +F + V+   G P+ I+++ D IF S  WK+        +  S  Y PQTDGQTE  N
Sbjct: 1030 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1089

Query: 128  RSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY 174
            ++VE  LRC C   P  W+  I   +  YN     +  ++PF+ V+
Sbjct: 1090 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of CSPI03G23940 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 8    PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTV 67
            P G L P+    R WE +SMDFI  LP+S GY  +FVVVDRFSK A  +       A+  
Sbjct: 970  PYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQT 1029

Query: 68   ADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVN 127
            A +F + V+   G P+ I+++ D IF S  WK+        +  S  Y PQTDGQTE  N
Sbjct: 1030 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1089

Query: 128  RSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY 174
            ++VE  LRC C   P  W+  I   +  YN     +  ++PF+ V+
Sbjct: 1090 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of CSPI03G23940 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 8    PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTV 67
            P G L P+    R WE +SMDFI  LP+S GY  +FVVVDRFSK A  +       A+  
Sbjct: 970  PYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQT 1029

Query: 68   ADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVN 127
            A +F + V+   G P+ I+++ D IF S  WK+        +  S  Y PQTDGQTE  N
Sbjct: 1030 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1089

Query: 128  RSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY 174
            ++VE  LRC C   P  W+  I   +  YN     +  ++PF+ V+
Sbjct: 1090 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of CSPI03G23940 vs. ExPASy TrEMBL
Match: A0A5D3BX34 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold758G00290 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.1e-85
Identity = 146/174 (83.91%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+DR SKYAHFL LK+P
Sbjct: 408 KSLSLSPARLLTPLEIPTRIWDDISMDFIEGLPKAAGFEVIFVVLDRLSKYAHFLTLKYP 467

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKELFRL GTKLNRST +HPQTDG
Sbjct: 468 FDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDG 527

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Sbjct: 528 QTEVVNRSMEAYLRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGR 581

[Close]

BLAST of CSPI03G23940 vs. ExPASy TrEMBL
Match: A0A5A7VG68 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00220 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.0e-85
Identity = 146/174 (83.91%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP GLLTPL+IPSRIW+ ISMDFIEGLPK+ G++VI VVVDRFSKYAHFL LKHP
Sbjct: 445 KSLSLSPAGLLTPLEIPSRIWDYISMDFIEGLPKAAGFDVILVVVDRFSKYAHFLALKHP 504

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDA+ VA+VFVKEVVRLHGFP+SIVS+RDK+F+S+FWKELFRL GTKLNRST YHPQTDG
Sbjct: 505 FDAQIVAEVFVKEVVRLHGFPKSIVSDRDKVFLSHFWKELFRLAGTKLNRSTTYHPQTDG 564

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QTEVV+RSVE YLRCFCGERPKEW+KWI WAEYWYN TYQ+SLGVSPFQAVYGR
Sbjct: 565 QTEVVSRSVEAYLRCFCGERPKEWIKWIHWAEYWYNRTYQQSLGVSPFQAVYGR 618

[Close]

BLAST of CSPI03G23940 vs. ExPASy TrEMBL
Match: A0A5A7UW14 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold542G00320 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84
Identity = 145/174 (83.33%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+D  SKYAHFL LK+P
Sbjct: 593 KSLSLSPARLLTPLEIPTRIWDDISMDFIEGLPKAAGFEVIFVVLDCLSKYAHFLTLKYP 652

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKELFRL GTKLNRST +HPQTDG
Sbjct: 653 FDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDG 712

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Sbjct: 713 QTEVVNRSMEAYLRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGR 766

[Close]

BLAST of CSPI03G23940 vs. ExPASy TrEMBL
Match: A0A5A7T0V2 (Protein SDA1-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00220 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 145/166 (87.35%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 10  GLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVAD 69
           GLLTPL+IPSRIW+DIS DFIEGLPK+ G+EVI VVVDRFSKY HFL LKHPFDAKTVA+
Sbjct: 302 GLLTPLEIPSRIWDDISRDFIEGLPKAAGFEVILVVVDRFSKYGHFLTLKHPFDAKTVAE 361

Query: 70  VFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDGQTEVVNRS 129
           VFVKEVVRLHGFPQ IVS+RDKIF+S+FWKELFRL GTKLNRSTAYHPQTDGQTEV+N S
Sbjct: 362 VFVKEVVRLHGFPQLIVSDRDKIFLSHFWKELFRLAGTKLNRSTAYHPQTDGQTEVINCS 421

Query: 130 VEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           VE YLRCFCGERPKEW+KWI W EYWYNTTYQRSLGVSPFQAVYGR
Sbjct: 422 VEAYLRCFCGERPKEWIKWIHWVEYWYNTTYQRSLGVSPFQAVYGR 467

[Close]

BLAST of CSPI03G23940 vs. ExPASy TrEMBL
Match: A0A5D3D331 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003350 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 147/174 (84.48%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP GLLTPLDI SRIW+DISMDFIEGLPK+ G+EVIFVVV+RFSKY HFL LKHP
Sbjct: 627 KSLSLSPAGLLTPLDILSRIWDDISMDFIEGLPKAAGFEVIFVVVNRFSKYGHFLTLKHP 686

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAKTV ++FVKEVVRLHGFPQSIV +RDKIF+S+FWKELFRL GTKLNR+TAYHPQTDG
Sbjct: 687 FDAKTVTELFVKEVVRLHGFPQSIVLDRDKIFLSHFWKELFRLAGTKLNRNTAYHPQTDG 746

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QT VVNRSVE YLRCFCGERPK+W KWI  AEYWYNTTYQR+LGVSPFQAVYGR
Sbjct: 747 QTVVVNRSVEAYLRCFCGERPKKWNKWIHLAEYWYNTTYQRALGVSPFQAVYGR 800

[Close]

BLAST of CSPI03G23940 vs. NCBI nr
Match: TYK04251.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 323.9 bits (829), Expect = 8.4e-85
Identity = 146/174 (83.91%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+DR SKYAHFL LK+P
Sbjct: 408 KSLSLSPARLLTPLEIPTRIWDDISMDFIEGLPKAAGFEVIFVVLDRLSKYAHFLTLKYP 467

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKELFRL GTKLNRST +HPQTDG
Sbjct: 468 FDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDG 527

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Sbjct: 528 QTEVVNRSMEAYLRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGR 581

[Close]

BLAST of CSPI03G23940 vs. NCBI nr
Match: KAA0066077.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa] >TYJ99820.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 146/174 (83.91%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP GLLTPL+IPSRIW+ ISMDFIEGLPK+ G++VI VVVDRFSKYAHFL LKHP
Sbjct: 445 KSLSLSPAGLLTPLEIPSRIWDYISMDFIEGLPKAAGFDVILVVVDRFSKYAHFLALKHP 504

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDA+ VA+VFVKEVVRLHGFP+SIVS+RDK+F+S+FWKELFRL GTKLNRST YHPQTDG
Sbjct: 505 FDAQIVAEVFVKEVVRLHGFPKSIVSDRDKVFLSHFWKELFRLAGTKLNRSTTYHPQTDG 564

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QTEVV+RSVE YLRCFCGERPKEW+KWI WAEYWYN TYQ+SLGVSPFQAVYGR
Sbjct: 565 QTEVVSRSVEAYLRCFCGERPKEWIKWIHWAEYWYNRTYQQSLGVSPFQAVYGR 618

[Close]

BLAST of CSPI03G23940 vs. NCBI nr
Match: KAA0060163.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 7.2e-84
Identity = 145/174 (83.33%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+D  SKYAHFL LK+P
Sbjct: 593 KSLSLSPARLLTPLEIPTRIWDDISMDFIEGLPKAAGFEVIFVVLDCLSKYAHFLTLKYP 652

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKELFRL GTKLNRST +HPQTDG
Sbjct: 653 FDAKIVAELFVKEVVRLHGFPRSIVSDRDKIFLSNFWKELFRLAGTKLNRSTTFHPQTDG 712

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Sbjct: 713 QTEVVNRSMEAYLRCFCGERPREWVKWIHWAEYWYNTTYQRSLGVSPFQAVYGR 766

[Close]

BLAST of CSPI03G23940 vs. NCBI nr
Match: KAA0042076.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 2.7e-83
Identity = 147/174 (84.48%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP GLLTPLDI SRIW+DISMDFIEGLPK+ G+EVIFVVV+RFSKY HFL LKHP
Sbjct: 627 KSLSLSPAGLLTPLDILSRIWDDISMDFIEGLPKAAGFEVIFVVVNRFSKYGHFLTLKHP 686

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAKTV ++FVKEVVRLHGFPQSIV +RDKIF+S+FWKELFRL GTKLNR+TAYHPQTDG
Sbjct: 687 FDAKTVTELFVKEVVRLHGFPQSIVLDRDKIFLSHFWKELFRLAGTKLNRNTAYHPQTDG 746

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QT VVNRSVE YLRCFCGERPK+W KWI  AEYWYNTTYQR+LGVSPFQAVYGR
Sbjct: 747 QTVVVNRSVEAYLRCFCGERPKKWNKWIHLAEYWYNTTYQRALGVSPFQAVYGR 800

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BLAST of CSPI03G23940 vs. NCBI nr
Match: TYK18018.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 2.7e-83
Identity = 147/174 (84.48%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 2   KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHP 61
           K+L+LSP GLLTPLDI SRIW+DISMDFIEGLPK+ G+EVIFVVV+RFSKY HFL LKHP
Sbjct: 627 KSLSLSPAGLLTPLDILSRIWDDISMDFIEGLPKAAGFEVIFVVVNRFSKYGHFLTLKHP 686

Query: 62  FDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLNRSTAYHPQTDG 121
           FDAKTV ++FVKEVVRLHGFPQSIV +RDKIF+S+FWKELFRL GTKLNR+TAYHPQTDG
Sbjct: 687 FDAKTVTELFVKEVVRLHGFPQSIVLDRDKIFLSHFWKELFRLAGTKLNRNTAYHPQTDG 746

Query: 122 QTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR 176
           QT VVNRSVE YLRCFCGERPK+W KWI  AEYWYNTTYQR+LGVSPFQAVYGR
Sbjct: 747 QTVVVNRSVEAYLRCFCGERPKKWNKWIHLAEYWYNTTYQRALGVSPFQAVYGR 800

The following BLAST results are available for this feature:

BLAST of CSPI03G23940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.9e-31	41.57	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.5e-31	41.57	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.1e-30	39.16	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.1e-30	39.16	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.1e-30	39.16	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI03G23940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX34	4.1e-85	83.91	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VG68	7.0e-85	83.91	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UW14	3.5e-84	83.33	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T0V2	1.3e-83	87.35	Protein SDA1-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D331	1.3e-83	84.48	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CSPI03G23940 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04251.1	8.4e-85	83.91	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066077.1	1.4e-84	83.91	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa] >TYJ99820.1 Transposon T...	[more]
KAA0060163.1	7.2e-84	83.33	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0042076.1	2.7e-83	84.48	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK18018.1	2.7e-83	84.48	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G23940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 12..177 e-value: 1.5E-51 score: 176.6
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 12..170
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 14..176 score: 18.614092
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23940.1	CSPI03G23940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030036	actin cytoskeleton organization
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004674	protein serine/threonine kinase activity