CSPI03G23890 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G23890
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 20992997 .. 20993331 (-)
RNA-Seq ExpressionCSPI03G23890
SyntenyCSPI03G23890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACTTGAGTTTGGATCTAGAGTATATTGATATAGGGATCGAGAACGTGAAGGATTTGGAGAGGCAGAGATGTGGTGACTTGCGTAAGCGACGGAAAGCAGTGAAACATGAGATCTTGATGTGAGCGACAAAATTCAGTTGGAATCATGATCTGGAATGGAGACGTCGTGCGAGAACTTGATCCAAGACGTCGTGCAAGATATGAAACCGTTGTGGGTTTGCTTTAGAGGTGTCGTCGGAGAACTGGAACGAAGTCGTTTGTTGGAGATCTGGAACAGAGGCAGTCATCGAACGTCAAAGACTGACGGCGATACTCTTTTTAAAAAATAT

mRNA sequence

ATGGTGGACTTGAGTTTGGATCTAGAGTATATTGATATAGGGATCGAGAACGTGAAGGATTTGGAGAGGCAGAGATGTGGTGACTTGCGTAAGCGACGGAAAGCAGTGAAACATGAGATCTTGATAGGTGTCGTCGGAGAACTGGAACGAAGTCGTTTGTTGGAGATCTGGAACAGAGGCAGTCATCGAACGTCAAAGACTGACGGCGATACTCTTTTTAAAAAATAT

Coding sequence (CDS)

ATGGTGGACTTGAGTTTGGATCTAGAGTATATTGATATAGGGATCGAGAACGTGAAGGATTTGGAGAGGCAGAGATGTGGTGACTTGCGTAAGCGACGGAAAGCAGTGAAACATGAGATCTTGATAGGTGTCGTCGGAGAACTGGAACGAAGTCGTTTGTTGGAGATCTGGAACAGAGGCAGTCATCGAACGTCAAAGACTGACGGCGATACTCTTTTTAAAAAATAT

Protein sequence

MVDLSLDLEYIDIGIENVKDLERQRCGDLRKRRKAVKHEILIGVVGELERSRLLEIWNRGSHRTSKTDGDTLFKKY
Homology
[Close]
BLAST of CSPI03G23890 vs. ExPASy TrEMBL
Match: A0A0A0L7Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455630 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-30
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 1  MVDLSLDLEYIDIGIENVKDLERQRCGDLRKRRKAVKHEILIGVVGELERSRLLEIWNRG 60
          MVDLSLDLEYIDIGIEN+KDLERQRCGDLR+RRKA K EILIGVVGELER+RLLEIWNRG
Sbjct: 1  MVDLSLDLEYIDIGIENMKDLERQRCGDLRRRRKAAKCEILIGVVGELERNRLLEIWNRG 60

Query: 61 SHRTSKTDGDTLFKKY 77
          SHRTSKTD  TLFKKY
Sbjct: 61 SHRTSKTDDGTLFKKY 76

[Close]
BLAST of CSPI03G23890 vs. NCBI nr
Match: KAE8650719.1 (hypothetical protein Csa_010631, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 43 GVVGELERSRLLEIWNRGSHRTSKTD 69
          GVVGELER+RLLEIWNRGSHRTSKTD
Sbjct: 25 GVVGELERNRLLEIWNRGSHRTSKTD 50

The following BLAST results are available for this feature:
BLAST of CSPI03G23890 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G23890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7Z83.6e-3090.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455630 PE=4 SV=1[more]
BLAST of CSPI03G23890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650719.12.4e-0496.15hypothetical protein Csa_010631, partial [Cucumis sativus][more]
BLAST of CSPI03G23890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23890.1CSPI03G23890.1mRNA