CSPI03G23670 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G23670
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 20644215 .. 20644430 (+)
RNA-Seq ExpressionCSPI03G23670
SyntenyCSPI03G23670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGACAATGATCCACTCTACAAGGAGAGAGAAACAATATCTGAAGAAGGTGGCGAGACACACCTCCCTTCACTACCTAAAGAAATTGTAGAAGCTTCAACAAAAGACGATAAGAATAAAGAAGCAATGAAGGAAAAGGATGAAGAAGTTGTTGACGATGATTATATCTTCTATTTCATAAATCACCACGTATGCAAACCAATGGAAAATTGA

mRNA sequence

ATGATTGACAATGATCCACTCTACAAGGAGAGAGAAACAATATCTGAAGAAGGTGGCGAGACACACCTCCCTTCACTACCTAAAGAAATTGTAGAAGCTTCAACAAAAGACGATAAGAATAAAGAAGCAATGAAGGAAAAGGATGAAGAAGTTGTTGACGATGATTATATCTTCTATTTCATAAATCACCACGTATGCAAACCAATGGAAAATTGA

Coding sequence (CDS)

ATGATTGACAATGATCCACTCTACAAGGAGAGAGAAACAATATCTGAAGAAGGTGGCGAGACACACCTCCCTTCACTACCTAAAGAAATTGTAGAAGCTTCAACAAAAGACGATAAGAATAAAGAAGCAATGAAGGAAAAGGATGAAGAAGTTGTTGACGATGATTATATCTTCTATTTCATAAATCACCACGTATGCAAACCAATGGAAAATTGA

Protein sequence

MIDNDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINHHVCKPMEN*
Homology
BLAST of CSPI03G23670 vs. ExPASy TrEMBL
Match: A0A0A0LD97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G432440 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0

Query: 1  MIDNDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYF 60
          MID+ PLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKE DEEVVDDDYIFYF
Sbjct: 1  MIDDYPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKENDEEVVDDDYIFYF 60

Query: 61 INHHVCKPMEN 72
          INHHVCKPMEN
Sbjct: 61 INHHVCKPMEN 71

BLAST of CSPI03G23670 vs. ExPASy TrEMBL
Match: A0A5D3DJV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00410 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 4  NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
          +DPLY E+E +  + G+  LPS  K  ++AST+ DK K+++++K+EE VD DYIF F+NH
Sbjct: 32 HDPLYGEKEILLNKVGKKSLPSPSKSTLKASTRKDKLKKSVRKKEEEEVDGDYIFKFMNH 91

Query: 64 HVCKPME 71
          ++ KPM+
Sbjct: 92 YIYKPMD 98

BLAST of CSPI03G23670 vs. ExPASy TrEMBL
Match: A0A5D3CJ32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 4  NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
          +DPL +E+E + E+ GE  LPS  K I EAST+ DK KEA++E  EE V  DY+F FI+ 
Sbjct: 6  DDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVRE--EEEVSADYVFMFIDE 65

Query: 64 HVCKPME 71
          ++CKP+E
Sbjct: 66 YICKPLE 70

BLAST of CSPI03G23670 vs. ExPASy TrEMBL
Match: A0A5A7UNI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001510 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 4   NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
           +DPL K +ET SE  G+T LP LPK+  E +T++ K KE +++ ++    +DY+F FIN 
Sbjct: 133 DDPLQKGKETTSEAAGKTSLPLLPKQTREPATQNAKQKEMIRDDED---GEDYVFKFIND 192

Query: 64  HVCKPMEN 72
           ++CKPM N
Sbjct: 193 YICKPMGN 197

BLAST of CSPI03G23670 vs. ExPASy TrEMBL
Match: A0A0A0LIB3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G147400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 4   NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
           NDP  +E+   SE  GET +PS PK  +E     D   E ++ KDEE VD++Y+F  ++H
Sbjct: 74  NDPFQREKVIASELDGETCIPSSPKTTIETPELKDTMTEDVR-KDEEEVDENYVFKLVDH 133

Query: 64  HVCKPME 71
           +VCKPME
Sbjct: 134 YVCKPME 139

BLAST of CSPI03G23670 vs. NCBI nr
Match: KAE8646246.1 (hypothetical protein Csa_023826, partial [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 51/68 (75.00%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
          +DPL KE+ET+S+E GETHLPSLP +IVEA+ ++DK+KEA+KEK+ EVVD DYIFYFINH
Sbjct: 17 DDPLQKEKETVSKEVGETHLPSLPIKIVEAAVQNDKSKEALKEKNHEVVDKDYIFYFINH 76

Query: 64 HVCKPMEN 72
          HVCKPMEN
Sbjct: 77 HVCKPMEN 84

BLAST of CSPI03G23670 vs. NCBI nr
Match: KAA0051346.1 (hypothetical protein E6C27_scaffold55G00680 [Cucumis melo var. makuwa] >TYK23867.1 hypothetical protein E5676_scaffold419G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 4  NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
          +DPLY E+E +  + G+  LPS  K  ++AST+ DK K+++++K+EE VD DYIF F+NH
Sbjct: 32 HDPLYGEKEILLNKVGKKSLPSPSKSTLKASTRKDKLKKSVRKKEEEEVDGDYIFKFMNH 91

Query: 64 HVCKPME 71
          ++ KPM+
Sbjct: 92 YIYKPMD 98

BLAST of CSPI03G23670 vs. NCBI nr
Match: TYK11947.1 (hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 4  NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
          +DPL +E+E + E+ GE  LPS  K I EAST+ DK KEA++E  EE V  DY+F FI+ 
Sbjct: 6  DDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVRE--EEEVSADYVFMFIDE 65

Query: 64 HVCKPME 71
          ++CKP+E
Sbjct: 66 YICKPLE 70

BLAST of CSPI03G23670 vs. NCBI nr
Match: KAA0056630.1 (hypothetical protein E6C27_scaffold288G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 8.3e-07
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 4   NDPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINH 63
           +DPL K +ET SE  G+T LP LPK+  E +T++ K KE +++ ++    +DY+F FIN 
Sbjct: 133 DDPLQKGKETTSEAAGKTSLPLLPKQTREPATQNAKQKEMIRDDED---GEDYVFKFIND 192

Query: 64  HVCKPMEN 72
           ++CKPM N
Sbjct: 193 YICKPMGN 197

BLAST of CSPI03G23670 vs. NCBI nr
Match: TYK27744.1 (hypothetical protein E5676_scaffold225G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 6   PLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKEKDEEVVDDDYIFYFINHHV 65
           PL K +ET SE   E HLPS   +  + + +D+K K+A++E D++  DDD+ F FIN +V
Sbjct: 151 PLRKRKETTSEVASEMHLPSRSNQTSKVTMQDNKQKKAVREDDDDEEDDDHFFKFINENV 210

Query: 66  CKPME 71
            KPM+
Sbjct: 211 SKPMQ 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LD972.0e-3095.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G432440 PE=4 SV=1[more]
A0A5D3DJV11.3e-0847.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CJ322.8e-0852.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UNI44.0e-0745.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LIB31.5e-0646.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G147400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8646246.11.0e-2075.00hypothetical protein Csa_023826, partial [Cucumis sativus][more]
KAA0051346.12.6e-0847.76hypothetical protein E6C27_scaffold55G00680 [Cucumis melo var. makuwa] >TYK23867... [more]
TYK11947.15.8e-0852.24hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa][more]
KAA0056630.18.3e-0745.59hypothetical protein E6C27_scaffold288G001510 [Cucumis melo var. makuwa][more]
TYK27744.14.1e-0644.62hypothetical protein E5676_scaffold225G00970 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23670.1CSPI03G23670.1mRNA