CSPI03G23640 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G23640
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	Chr3: 20599533 .. 20600089 (+)
RNA-Seq Expression	CSPI03G23640
Synteny	CSPI03G23640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGACCGTTGACCAAATTATTACAAAAGAACTCATTCCTATGGGGGGAAGAAGCAACAGAGGCGTTTGATAAGCTGAAATTAGCCATGACAACCCTACCCGTACTAGCTCTACCGGATTGGAACCTGCCTTTCATCATTGAAACAGATGCGTCGGGGATTGCTTTAGGGGCAGTTCTATCTCAAAATGGCCATCCCATAGCTTTTTTCAGTCAAAAACTATCGAACCGAGCTAAAACCAAGTCCATATATGAGAGGGAATTGATGGCTGTGGTGCTGTCAGTACAGAAGTGGAGACATTACCTCTTGGGAAGGAAGTTTACAATCATCTCAGATCAGAGGGCCCTTAAATTCCTTTTAGAGCAGAGGGAAGTGCAACCCCAATTCCAGAAGTGACTGACTAAACTCCTCGGGTATGACTTCGAAATACTTTACCAACCCGGATTACAAAACAAAGCAGCCGATGCCCTCTCCCGAATAGAACAACCAGTGGAAATGAAGAGTATGTCCACCACGGGTATTGTCAACATGGAGGTGGTAGAGAAAGAAGTTGA

mRNA sequence

ATGGCAGGACCGTTGACCAAATTATTACAAAAGAACTCATTCCTATGGGGGGAAGAAGCAACAGAGGCGTTTGATAAGCTGAAATTAGCCATGACAACCCTACCCGTACTAGCTCTACCGGATTGGAACCTGCCTTTCATCATTGAAACAGATGCGTCGGGGATTGCTTTAGGGGCAGTTCTATCTCAAAATGGCCATCCCATAGCTTTTTTCAGTCAAAAACTATCGAACCGAGCTAAAACCAAGTCCATATATGAGAGGGAATTGATGGCTGTGGTGCTGTCAGTACAGAAGTGGAGACATTACCTCTTGGGAAGGAAGTTTACAATCATCTCAGATCAGAGGGCCCTTAAATTCCTTTTAGAGCAGAGGGAAGTGCAACCCCAATTCCAGAAAACAACCAGTGGAAATGAAGAGTATGTCCACCACGGGTATTGTCAACATGGAGGTGGTAGAGAAAGAAGTTGA

Coding sequence (CDS)

ATGGCAGGACCGTTGACCAAATTATTACAAAAGAACTCATTCCTATGGGGGGAAGAAGCAACAGAGGCGTTTGATAAGCTGAAATTAGCCATGACAACCCTACCCGTACTAGCTCTACCGGATTGGAACCTGCCTTTCATCATTGAAACAGATGCGTCGGGGATTGCTTTAGGGGCAGTTCTATCTCAAAATGGCCATCCCATAGCTTTTTTCAGTCAAAAACTATCGAACCGAGCTAAAACCAAGTCCATATATGAGAGGGAATTGATGGCTGTGGTGCTGTCAGTACAGAAGTGGAGACATTACCTCTTGGGAAGGAAGTTTACAATCATCTCAGATCAGAGGGCCCTTAAATTCCTTTTAGAGCAGAGGGAAGTGCAACCCCAATTCCAGAAAACAACCAGTGGAAATGAAGAGTATGTCCACCACGGGTATTGTCAACATGGAGGTGGTAGAGAAAGAAGTTGA

Protein sequence

MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFLLEQREVQPQFQKTTSGNEEYVHHGYCQHGGGRERS*

Homology

[Close]

BLAST of CSPI03G23640 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 60/142 (42.25%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGE--EATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALG 60
           +A P+T  L+K + +  +  E  EAF+KLK  +   P+L LPD+   F++ TDAS +ALG
Sbjct: 461 IAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALG 520

Query: 61  AVLSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALK 120
           AVLSQNGHPI+F S+ L++     S  E+EL+A+V + + +RHYLLGR+F I SD + L+
Sbjct: 521 AVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLR 580

Query: 121 FLLEQREVQPQFQKTTSGNEEY 141
           +L   +E   + ++      EY
Sbjct: 581 WLHNLKEPGAKLERWRVRLSEY 602

[Close]

BLAST of CSPI03G23640 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-21
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFL--WGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALG 60
           +A P+TK L+KN  +     E   AF KLK  ++  P+L +PD+   F + TDAS +ALG
Sbjct: 462 IAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALG 521

Query: 61  AVLSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALK 120
           AVLSQ+GHP+++ S+ L+      S  E+EL+A+V + + +RHYLLGR F I SD + L 
Sbjct: 522 AVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLS 581

Query: 121 FLLEQRE 126
           +L   ++
Sbjct: 582 WLYRMKD 588

[Close]

BLAST of CSPI03G23640 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 43/122 (35.25%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 4   PLTKLLQKN-SFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAVLS 63
           PL  LL+K+  + W    T+A + +K  + + PVL   D++   ++ETDAS +A+GAVLS
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLS 724

Query: 64  QNG-----HPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLG--RKFTIISDQR 118
           Q       +P+ ++S K+S      S+ ++E++A++ S++ WRHYL      F I++D R
Sbjct: 725 QKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHR 784

[Close]

BLAST of CSPI03G23640 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 43/122 (35.25%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 4   PLTKLLQKN-SFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAVLS 63
           PL  LL+K+  + W    T+A + +K  + + PVL   D++   ++ETDAS +A+GAVLS
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLS 724

Query: 64  QNG-----HPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLG--RKFTIISDQR 118
           Q       +P+ ++S K+S      S+ ++E++A++ S++ WRHYL      F I++D R
Sbjct: 725 QKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHR 784

[Close]

BLAST of CSPI03G23640 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 43/122 (35.25%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 4   PLTKLLQKN-SFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAVLS 63
           PL  LL+K+  + W    T+A + +K  + + PVL   D++   ++ETDAS +A+GAVLS
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLS 724

Query: 64  QNG-----HPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLG--RKFTIISDQR 118
           Q       +P+ ++S K+S      S+ ++E++A++ S++ WRHYL      F I++D R
Sbjct: 725 QKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHR 784

[Close]

BLAST of CSPI03G23640 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 111/132 (84.09%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLTKLLQKN+F W E AT AF+ LKLAMTT+PVL LPDW+LPF+IETDASG  LGAV
Sbjct: 740 IAAPLTKLLQKNAFKWDENATLAFESLKLAMTTIPVLVLPDWSLPFMIETDASGSGLGAV 799

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQNGHPIAFFSQKLS RA++KSIYERELMAVVLSVQKWRHYLLGR+FTIISDQ+ALKFL
Sbjct: 800 LSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSVQKWRHYLLGRRFTIISDQKALKFL 859

Query: 121 LEQREVQPQFQK 133
            EQREVQPQFQK
Sbjct: 860 SEQREVQPQFQK 871

[Close]

BLAST of CSPI03G23640 vs. ExPASy TrEMBL
Match: A0A5D3BX90 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001180 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.6e-55
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLTKLLQKN+F W E AT AF+ LK AMTT+PVLALPDW+LPF+IETDASG  LGAV
Sbjct: 33  IAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAV 92

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQNGHPIAFFSQKLS RA++KSIYERELM VVLSVQKWRHYL+GR+FTI+SDQ+ALKFL
Sbjct: 93  LSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFL 152

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 153 LEQREVQPQFQK 164

[Close]

BLAST of CSPI03G23640 vs. ExPASy TrEMBL
Match: A0A5D3CPQ1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00210 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.6e-55
Identity = 110/132 (83.33%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLTKLLQKN+F W EEAT AF+ LK AMTT+PVLALPDW+LPF+IETDASG  LGAV
Sbjct: 33  IAAPLTKLLQKNAFKWDEEATLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAV 92

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQN HPIAFFSQKLS RA++KSIYERELM VVLSVQKWRHYLLGR+FTI+SDQ+ALKFL
Sbjct: 93  LSQNDHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLLGRRFTIVSDQKALKFL 152

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 153 LEQREVQPQFQK 164

[Close]

BLAST of CSPI03G23640 vs. ExPASy TrEMBL
Match: A0A5D3E7V3 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00560 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.5e-54
Identity = 108/132 (81.82%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLTKLLQKNSF W +EAT AF+ LKLAMTT+PVLAL DW+LPF++ETDASG  LGAV
Sbjct: 33  IAAPLTKLLQKNSFKWDDEATLAFEDLKLAMTTIPVLALSDWSLPFVVETDASGSWLGAV 92

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQNGHPIAFFSQKLS RA+ KSIYERELMA+VL+VQKWRHY+LGR+FTI+SDQ+ALKFL
Sbjct: 93  LSQNGHPIAFFSQKLSMRAQNKSIYERELMAIVLAVQKWRHYILGRRFTIMSDQKALKFL 152

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 153 LEQREVQPQFQK 164

[Close]

BLAST of CSPI03G23640 vs. ExPASy TrEMBL
Match: A0A5A7V2N3 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00990 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 109/132 (82.58%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +  PLTKLLQKN+F W E AT AF+ LK AMTT+PVLALPDW+LPF+IETDASG  LGAV
Sbjct: 33  IVAPLTKLLQKNAFKWDENATLAFESLKKAMTTIPVLALPDWSLPFMIETDASGSGLGAV 92

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQN HPIAFFSQKLS RA++KSIYERELMAVVLSVQKWRHYLLGR+FTI+SDQ+ALKFL
Sbjct: 93  LSQNSHPIAFFSQKLSPRAQSKSIYERELMAVVLSVQKWRHYLLGRRFTIVSDQKALKFL 152

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 153 LEQREVQPQFQK 164

[Close]

BLAST of CSPI03G23640 vs. NCBI nr
Match: KGN62557.2 (hypothetical protein Csa_018739 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           MA PLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV
Sbjct: 313 MAEPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 372

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL
Sbjct: 373 LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 432

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 433 LEQREVQPQFQK 444

[Close]

BLAST of CSPI03G23640 vs. NCBI nr
Match: KAE8637370.1 (hypothetical protein CSA_004463 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57
Identity = 114/132 (86.36%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLT+LLQKNSF W E+ATEAF+KLK+AMTT+PVLALP+W+LPF+IETDASG  LGAV
Sbjct: 79  IAAPLTRLLQKNSFAWDEQATEAFEKLKMAMTTIPVLALPNWDLPFLIETDASGTGLGAV 138

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQNGHPIAFFSQKLS RA+ KSIYERELMAVVLSVQKWRHYLLGRKFTIISDQ+ALKFL
Sbjct: 139 LSQNGHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQKALKFL 198

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 199 LEQREVQPQFQK 210

[Close]

BLAST of CSPI03G23640 vs. NCBI nr
Match: XP_031745419.1 (uncharacterized protein LOC116405630 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLTKLLQKN+F W EEAT AFD+LKLAMTTLPVLALPDW+ PF IETDASG+ LGAV
Sbjct: 687 IAAPLTKLLQKNAFHWNEEATIAFDQLKLAMTTLPVLALPDWSQPFTIETDASGVGLGAV 746

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQ+GHPIAFFSQKLS RA+ KSIYERELMAVVLSVQKWRHYLLGRKFTI+SDQ+ALKFL
Sbjct: 747 LSQDGHPIAFFSQKLSPRAQGKSIYERELMAVVLSVQKWRHYLLGRKFTIVSDQKALKFL 806

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 807 LEQREVQPQFQK 818

[Close]

BLAST of CSPI03G23640 vs. NCBI nr
Match: KAE8637598.1 (hypothetical protein CSA_022681 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLTKLLQKN+F W EEAT AFD+LKLAMTTLPVLALPDW+ PF IETDASG+ LGAV
Sbjct: 373 IAAPLTKLLQKNAFHWNEEATIAFDQLKLAMTTLPVLALPDWSQPFTIETDASGVGLGAV 432

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQ+GHPIAFFSQKLS RA+ KSIYERELMAVVLSVQKWRHYLLGRKFTI+SDQ+ALKFL
Sbjct: 433 LSQDGHPIAFFSQKLSPRAQGKSIYERELMAVVLSVQKWRHYLLGRKFTIVSDQKALKFL 492

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 493 LEQREVQPQFQK 504

[Close]

BLAST of CSPI03G23640 vs. NCBI nr
Match: KAE8637561.1 (hypothetical protein CSA_017659 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 7.2e-56
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETDASGIALGAV 60
           +A PLT+LLQKNSF+W E+AT AF+KLK AMTT+PVLALP+W+LPF+IETDASG  LGAV
Sbjct: 465 IAAPLTRLLQKNSFVWDEQATVAFEKLKTAMTTIPVLALPNWDLPFLIETDASGTGLGAV 524

Query: 61  LSQNGHPIAFFSQKLSNRAKTKSIYERELMAVVLSVQKWRHYLLGRKFTIISDQRALKFL 120
           LSQNGHPIAFFSQKLS RA+ KSIYERELM VVLSVQKWRHYLLGRKFTIISDQ+ALKFL
Sbjct: 525 LSQNGHPIAFFSQKLSIRAQAKSIYERELMVVVLSVQKWRHYLLGRKFTIISDQKALKFL 584

Query: 121 LEQREVQPQFQK 133
           LEQREVQPQFQK
Sbjct: 585 LEQREVQPQFQK 596

[Close]

BLAST of CSPI03G23640 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-09
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 4   PLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFI 48
           PLT+LL+KNS  W E A  AF  LK A+TTLPVLALPD  LPF+
Sbjct: 89  PLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of CSPI03G23640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.3e-23	42.25	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.7e-21	42.52	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q9UR07	4.2e-14	35.25	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.2e-14	35.25	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.2e-14	35.25	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI03G23640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJU2	5.0e-55	84.09	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BX90	8.6e-55	82.58	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CPQ1	8.6e-55	83.33	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3E7V3	2.5e-54	81.82	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V2N3	3.3e-54	82.58	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CSPI03G23640 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62557.2	2.2e-65	99.24	hypothetical protein Csa_018739 [Cucumis sativus]	[more]
KAE8637370.1	1.3e-57	86.36	hypothetical protein CSA_004463 [Cucumis sativus]	[more]
XP_031745419.1	3.2e-56	86.36	uncharacterized protein LOC116405630 [Cucumis sativus]	[more]
KAE8637598.1	3.2e-56	86.36	hypothetical protein CSA_022681 [Cucumis sativus]	[more]
KAE8637561.1	7.2e-56	84.85	hypothetical protein CSA_017659 [Cucumis sativus]	[more]

BLAST of CSPI03G23640 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.4e-09	65.91	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 16..110 e-value: 1.9E-34 score: 117.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..43 e-value: 3.6E-9 score: 38.5
None	No IPR available	GENE3D	3.10.20.370		coord: 44..111 e-value: 1.6E-10 score: 42.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..134
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..134
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 47..132 e-value: 3.67533E-37 score: 121.831
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23640.1	CSPI03G23640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding