CSPI03G23570 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G23570
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 20508862 .. 20509206 (-)
RNA-Seq ExpressionCSPI03G23570
SyntenyCSPI03G23570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGTTCATCAGAAAGAGATGGTCATGTGTCGGAGCAAGCCCAGGTTAACCCTTTACCGTACAATGAGGGTGCAACCTTGTCCTGTTCAAGTGAAATCTTTGGAATAGAGGGCTTTAATTCCTTCAACTTCAATGGAAGGGAAATACCCATAACCACCGATAACATTGAGGTTATGCTCGGTTTATTCCTTGAAGAAAACCAGAGAAGAGAATGGTTAATGGAAGAAGCTGAAAAGAGACAAAAGGAAAACGATAAAAAAGCAAGGAAAGAGCAGCTAGATAAGGAGAGAGAAAAGAAAGAACAATTAGAAAAAAATGAAGAAGATAAAAATGGAAAATAA

mRNA sequence

ATGGGGAGTTCATCAGAAAGAGATGGTCATGTGTCGGAGCAAGCCCAGGTTAACCCTTTACCGTACAATGAGGGTGCAACCTTGTCCTGTTCAAGTGAAATCTTTGGAATAGAGGGCTTTAATTCCTTCAACTTCAATGGAAGGGAAATACCCATAACCACCGATAACATTGAGGTTATGCTCGGTTTATTCCTTGAAGAAAACCAGAGAAGAGAATGGTTAATGGAAGAAGCTGAAAAGAGACAAAAGGAAAACGATAAAAAAGCAAGGAAAGAGCAGCTAGATAAGGAGAGAGAAAAGAAAGAACAATTAGAAAAAAATGAAGAAGATAAAAATGGAAAATAA

Coding sequence (CDS)

ATGGGGAGTTCATCAGAAAGAGATGGTCATGTGTCGGAGCAAGCCCAGGTTAACCCTTTACCGTACAATGAGGGTGCAACCTTGTCCTGTTCAAGTGAAATCTTTGGAATAGAGGGCTTTAATTCCTTCAACTTCAATGGAAGGGAAATACCCATAACCACCGATAACATTGAGGTTATGCTCGGTTTATTCCTTGAAGAAAACCAGAGAAGAGAATGGTTAATGGAAGAAGCTGAAAAGAGACAAAAGGAAAACGATAAAAAAGCAAGGAAAGAGCAGCTAGATAAGGAGAGAGAAAAGAAAGAACAATTAGAAAAAAATGAAGAAGATAAAAATGGAAAATAA

Protein sequence

MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFLEENQRREWLMEEAEKRQKENDKKARKEQLDKEREKKEQLEKNEEDKNGK*
Homology
BLAST of CSPI03G23570 vs. ExPASy TrEMBL
Match: A0A0A0LBL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.8e-49
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0

Query: 1   MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVM 60
           MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTD+IEVM
Sbjct: 1   MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVM 60

Query: 61  LGLFLEENQRREWLMEEAEKRQKENDKKARKEQLDKEREKKEQLEKNEEDKNGK 115
           LGLFLEENQRRE LMEEAEKRQKE+DKKARKEQLDKEREKKEQLEKNEEDKNGK
Sbjct: 61  LGLFLEENQRRERLMEEAEKRQKEDDKKARKEQLDKEREKKEQLEKNEEDKNGK 114

BLAST of CSPI03G23570 vs. ExPASy TrEMBL
Match: A0A0A0LAT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 8   DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFLEE 67
           DG +SEQAQ + +      TL  SS+IFG EGFN FNF GREI +T +N+E+MLGLFLEE
Sbjct: 21  DGRMSEQAQPSFV-----QTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEE 80

Query: 68  NQRREWLMEE--AEKRQKENDKKARK 92
           N+RRE L E    EK  +   K+ +K
Sbjct: 81  NKRREKLRETYGGEKESRGGRKRKKK 101

BLAST of CSPI03G23570 vs. ExPASy TrEMBL
Match: A0A5A7VAE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001420 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.9e-07
Identity = 43/104 (41.35%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 9   GHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFLEEN 68
           G VSEQAQ+     N+   L  S E+FG +G+N F+F  +E+ +T +NI+ +  L +EE+
Sbjct: 59  GPVSEQAQLASSSLNK--ALPSSREVFGTKGWNPFSFKSKEVLMTNENIDFITNLLMEES 118

Query: 69  QRREWLMEEAEKRQKENDKKARKEQL-DKEREKKEQLEKNEEDK 112
            +R    EE EK++KE+++KARKE+  ++ER K+E+ +K +ED+
Sbjct: 119 NKRAETKEEVEKKRKEDEEKARKEKAEEEERNKREEEKKKKEDE 160

BLAST of CSPI03G23570 vs. ExPASy TrEMBL
Match: A0A5D3CGX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00340 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 8  DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFL 66
          DG VSEQ Q+    +N+   L  SS +FG EG+N FNF G+ IP+  DNI +ML L L
Sbjct: 32 DGPVSEQRQLGCTSHNK--ALPSSSSVFGTEGWNPFNFKGKVIPMIDDNIAMMLKLLL 87

BLAST of CSPI03G23570 vs. NCBI nr
Match: KGN58057.2 (hypothetical protein Csa_011332 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0

Query: 1   MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVM 60
           MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTD+IEVM
Sbjct: 18  MGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVM 77

Query: 61  LGLFLEENQRREWLMEEAEKRQKENDKKARKEQLDKEREKKEQLEKNEEDKNGK 115
           LGLFLEENQRRE LMEEAEKRQKE+DKKARKEQLDKEREKKEQLEKNEEDKNGK
Sbjct: 78  LGLFLEENQRRERLMEEAEKRQKEDDKKARKEQLDKEREKKEQLEKNEEDKNGK 131

BLAST of CSPI03G23570 vs. NCBI nr
Match: KGN57782.1 (hypothetical protein Csa_010186 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-10
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 8   DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFLEE 67
           DG +SEQAQ + +      TL  SS+IFG EGFN FNF GREI +T +N+E+MLGLFLEE
Sbjct: 21  DGRMSEQAQPSFV-----QTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEE 80

Query: 68  NQRREWLMEE--AEKRQKENDKKARK 92
           N+RRE L E    EK  +   K+ +K
Sbjct: 81  NKRREKLRETYGGEKESRGGRKRKKK 101

BLAST of CSPI03G23570 vs. NCBI nr
Match: KAA0062631.1 (hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-07
Identity = 43/104 (41.35%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 9   GHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFLEEN 68
           G VSEQAQ+     N+   L  S E+FG +G+N F+F  +E+ +T +NI+ +  L +EE+
Sbjct: 59  GPVSEQAQLASSSLNK--ALPSSREVFGTKGWNPFSFKSKEVLMTNENIDFITNLLMEES 118

Query: 69  QRREWLMEEAEKRQKENDKKARKEQL-DKEREKKEQLEKNEEDK 112
            +R    EE EK++KE+++KARKE+  ++ER K+E+ +K +ED+
Sbjct: 119 NKRAETKEEVEKKRKEDEEKARKEKAEEEERNKREEEKKKKEDE 160

BLAST of CSPI03G23570 vs. NCBI nr
Match: TYK11051.1 (hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 8  DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDNIEVMLGLFL 66
          DG VSEQ Q+    +N+   L  SS +FG EG+N FNF G+ IP+  DNI +ML L L
Sbjct: 32 DGPVSEQRQLGCTSHNK--ALPSSSSVFGTEGWNPFNFKGKVIPMIDDNIAMMLKLLL 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBL26.8e-4997.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1[more]
A0A0A0LAT22.1e-1053.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1[more]
A0A5A7VAE22.9e-0741.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGX21.3e-0450.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KGN58057.21.4e-4897.37hypothetical protein Csa_011332 [Cucumis sativus][more]
KGN57782.14.4e-1053.49hypothetical protein Csa_010186 [Cucumis sativus][more]
KAA0062631.16.0e-0741.35hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa][more]
TYK11051.12.8e-0450.00hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23570.1CSPI03G23570.1mRNA