CSPI03G22800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G22800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CDT1-like protein b
Location	Chr3: 19470343 .. 19470717 (+)
RNA-Seq Expression	CSPI03G22800
Synteny	CSPI03G22800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTACTCTTAGTCTGTAATAATGGCGGACGCTTCAAACAAGATTTCTTCTCGTTCATCAACTTTACCCTTCAAATCGAAGAAAAATTTGGGCTCCAACTCCTCATCATTGCTCAAGGATCCGCAACCTCTAAGCTCCAGGACGCCGGAGAAGCCGGTGGAGCGAAATAGGAAACGGAAGGTTGCGCTTTCCATTAAAGAGGTTAAACAAGCTGCTCAGAGCGTCCGTGAATCTAATCGTCAGTTGCATCATGATCTGACCACTAGAGGGAGTAAATTAGTTAGAAGACAGATGGATTCGTGGTCAAATGAAAGTCAATCTAGTAGATCCAAGACTTGTGTTGATAATAAGTCAAATAAATTGCCTGAAAAGTAA

mRNA sequence

CTTTACTCTTAGTCTGTAATAATGGCGGACGCTTCAAACAAGATTTCTTCTCGTTCATCAACTTTACCCTTCAAATCGAAGAAAAATTTGGGCTCCAACTCCTCATCATTGCTCAAGGATCCGCAACCTCTAAGCTCCAGGACGCCGGAGAAGCCGGTGGAGCGAAATAGGAAACGGAAGGTTGCGCTTTCCATTAAAGAGGTTAAACAAGCTGCTCAGAGCGTCCGTGAATCTAATCGTCAGTTGCATCATGATCTGACCACTAGAGGGAGTAAATTAGTTAGAAGACAGATGGATTCGTGGTCAAATGAAAGTCAATCTAGTAGATCCAAGACTTGTGTTGATAATAAGTCAAATAAATTGCCTGAAAAGTAA

Coding sequence (CDS)

ATGGCGGACGCTTCAAACAAGATTTCTTCTCGTTCATCAACTTTACCCTTCAAATCGAAGAAAAATTTGGGCTCCAACTCCTCATCATTGCTCAAGGATCCGCAACCTCTAAGCTCCAGGACGCCGGAGAAGCCGGTGGAGCGAAATAGGAAACGGAAGGTTGCGCTTTCCATTAAAGAGGTTAAACAAGCTGCTCAGAGCGTCCGTGAATCTAATCGTCAGTTGCATCATGATCTGACCACTAGAGGGAGTAAATTAGTTAGAAGACAGATGGATTCGTGGTCAAATGAAAGTCAATCTAGTAGATCCAAGACTTGTGTTGATAATAAGTCAAATAAATTGCCTGAAAAGTAA

Protein sequence

MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKEVKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK*

Homology

[Close]

BLAST of CSPI03G22800 vs. ExPASy Swiss-Prot
Match: Q9SJW9 (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.6e-04
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 12  SSTLPFKSKKNL-----GSNSSSLLKDPQPLSSRTPEKPVE----RNRKRKVALSIKEVK 71
           S ++PFKSKK L      S S +   +P  ++  TPEKP+E    R+R R VALS+KE++
Sbjct: 7   SRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSVKEIR 66

Query: 72  QAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           QAA S R S   +        S    R     S+ S S R  +  + +  KLPEK
Sbjct: 67  QAAGSRRRSEDPV-------ASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEK 114

[Close]

BLAST of CSPI03G22800 vs. ExPASy TrEMBL
Match: A0A0A0L7I7 (CDT1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKE 60
           MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQ LSSRTPEKPVERNRKRKVALSIKE
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKRKVALSIKE 60

Query: 61  VKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           VKQAAQSV ESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK
Sbjct: 61  VKQAAQSVHESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 117

[Close]

BLAST of CSPI03G22800 vs. ExPASy TrEMBL
Match: A0A5A7T8X4 (CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00930 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.1e-41
Identity = 101/117 (86.32%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKE 60
           MADAS+ ISS SSTLPFKSKKNLGSN  SLLKDPQ LSS+TPEKP ER RKRKVALSIKE
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKRKVALSIKE 60

Query: 61  VKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           VK+AAQSV ESNRQL HDLTT+GSKLVRRQMDS SNES SSRSKTCVD KSNKLPEK
Sbjct: 61  VKRAAQSVNESNRQLPHDLTTKGSKLVRRQMDSSSNESLSSRSKTCVDKKSNKLPEK 117

[Close]

BLAST of CSPI03G22800 vs. ExPASy TrEMBL
Match: A0A1S3BGW9 (CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.1e-41
Identity = 101/117 (86.32%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKE 60
           MADAS+ ISS SSTLPFKSKKNLGSN  SLLKDPQ LSS+TPEKP ER RKRKVALSIKE
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKRKVALSIKE 60

Query: 61  VKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           VK+AAQSV ESNRQL HDLTT+GSKLVRRQMDS SNES SSRSKTCVD KSNKLPEK
Sbjct: 61  VKRAAQSVNESNRQLPHDLTTKGSKLVRRQMDSSSNESLSSRSKTCVDKKSNKLPEK 117

[Close]

BLAST of CSPI03G22800 vs. ExPASy TrEMBL
Match: A0A0A0LD77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842990 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.7e-32
Identity = 95/121 (78.51%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKR-KVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQ LSS+TPEKP ER RKR KVALSI+
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVKQAAQSVRESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 118
           EV++AAQSV ESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

[Close]

BLAST of CSPI03G22800 vs. ExPASy TrEMBL
Match: A0A6J1HQP8 (CDT1-like protein b OS=Cucurbita maxima OX=3661 GN=LOC111466932 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.1e-29
Identity = 87/118 (73.73%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 3   DASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVE---RNRKRKVALSIK 62
           DAS KISS SS+LPFKSKK L SNS SLL+D Q LSS+TPEK  E   R R RKVALSIK
Sbjct: 2   DASEKISSPSSSLPFKSKKTLRSNSKSLLQDQQSLSSKTPEKSAELSTRTRSRKVALSIK 61

Query: 63  EVKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           EV++AA+SVRESNRQL  DLTT GSK VRRQ+DSWSNES SSR KT VD K  KLPEK
Sbjct: 62  EVRRAAESVRESNRQLPRDLTTEGSKSVRRQIDSWSNESPSSRFKTSVD-KYKKLPEK 118

[Close]

BLAST of CSPI03G22800 vs. NCBI nr
Match: XP_004151978.3 (CDT1-like protein a, chloroplastic [Cucumis sativus] >KAE8650673.1 hypothetical protein Csa_009499 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 3.4e-50
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKE 60
           MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQ LSSRTPEKPVERNRKRKVALSIKE
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKRKVALSIKE 60

Query: 61  VKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           VKQAAQSV ESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK
Sbjct: 61  VKQAAQSVHESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 117

[Close]

BLAST of CSPI03G22800 vs. NCBI nr
Match: XP_031737520.1 (CDT1-like protein a, chloroplastic [Cucumis sativus] >KGN57983.2 hypothetical protein Csa_010006 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKE 60
           MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQ LSSRTPEKPVERNRKRKVALSIKE
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKRKVALSIKE 60

Query: 61  VKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           VKQAAQSV ESNRQLHHDLTTRGSKLVRRQMDSWS ESQSSRSKTCVDNKSNK PEK
Sbjct: 61  VKQAAQSVHESNRQLHHDLTTRGSKLVRRQMDSWSTESQSSRSKTCVDNKSNKFPEK 117

[Close]

BLAST of CSPI03G22800 vs. NCBI nr
Match: XP_008447443.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo] >KAA0038091.1 CDT1-like protein a [Cucumis melo var. makuwa] >TYK20516.1 CDT1-like protein a [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-40
Identity = 101/117 (86.32%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKRKVALSIKE 60
           MADAS+ ISS SSTLPFKSKKNLGSN  SLLKDPQ LSS+TPEKP ER RKRKVALSIKE
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKRKVALSIKE 60

Query: 61  VKQAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           VK+AAQSV ESNRQL HDLTT+GSKLVRRQMDS SNES SSRSKTCVD KSNKLPEK
Sbjct: 61  VKRAAQSVNESNRQLPHDLTTKGSKLVRRQMDSSSNESLSSRSKTCVDKKSNKLPEK 117

[Close]

BLAST of CSPI03G22800 vs. NCBI nr
Match: XP_031739146.1 (CDT1-like protein a, chloroplastic [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 95/121 (78.51%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKR-KVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQ LSS+TPEKP ER RKR KVALSI+
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVKQAAQSVRESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 118
           EV++AAQSV ESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

[Close]

BLAST of CSPI03G22800 vs. NCBI nr
Match: KAE8651274.1 (hypothetical protein Csa_001826, partial [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 95/121 (78.51%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQPLSSRTPEKPVERNRKR-KVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQ LSS+TPEKP ER RKR KVALSI+
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVKQAAQSVRESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 118
           EV++AAQSV ESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

[Close]

BLAST of CSPI03G22800 vs. TAIR 10
Match: AT2G31270.1 (homolog of yeast CDT1 A )

HSP 1 Score: 44.7 bits (104), Expect = 6.1e-05
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 12  SSTLPFKSKKNL-----GSNSSSLLKDPQPLSSRTPEKPVE----RNRKRKVALSIKEVK 71
           S ++PFKSKK L      S S +   +P  ++  TPEKP+E    R+R R VALS+KE++
Sbjct: 7   SRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSVKEIR 66

Query: 72  QAAQSVRESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPEK 118
           QAA S R S   +        S    R     S+ S S R  +  + +  KLPEK
Sbjct: 67  QAAGSRRRSEDPV-------ASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEK 114

The following BLAST results are available for this feature:

BLAST of CSPI03G22800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJW9	8.6e-04	37.39	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1...	[more]

BLAST of CSPI03G22800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7I7	1.7e-50	98.29	CDT1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=3 S...	[more]
A0A5A7T8X4	9.1e-41	86.32	CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G...	[more]
A0A1S3BGW9	9.1e-41	86.32	CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=3 ...	[more]
A0A0A0LD77	2.7e-32	78.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842990 PE=4 SV=1	[more]
A0A6J1HQP8	6.1e-29	73.73	CDT1-like protein b OS=Cucurbita maxima OX=3661 GN=LOC111466932 PE=3 SV=1	[more]

BLAST of CSPI03G22800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151978.3	3.4e-50	98.29	CDT1-like protein a, chloroplastic [Cucumis sativus] >KAE8650673.1 hypothetical ...	[more]
XP_031737520.1	5.0e-49	96.58	CDT1-like protein a, chloroplastic [Cucumis sativus] >KGN57983.2 hypothetical pr...	[more]
XP_008447443.1	1.9e-40	86.32	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo] >KAA0038091.1 CDT1-...	[more]
XP_031739146.1	5.5e-32	78.51	CDT1-like protein a, chloroplastic [Cucumis sativus]	[more]
KAE8651274.1	5.5e-32	78.51	hypothetical protein Csa_001826, partial [Cucumis sativus]	[more]

BLAST of CSPI03G22800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31270.1	6.1e-05	37.39	homolog of yeast CDT1 A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G22800.1	CSPI03G22800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0071163	DNA replication preinitiation complex assembly
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0070182	DNA polymerase binding