CSPI03G22320 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G22320
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Zf-CCHC domain-containing protein
Location	Chr3: 18773703 .. 18774014 (-)
RNA-Seq Expression	CSPI03G22320
Synteny	CSPI03G22320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCACGAAGTATGTGATGTCCTTTGTAATGGATAAAGAAGTAAAGTGTAAGCATTTTGAAGGAGGTCTAAGGACGGCCATCCGAGTGCCAGTGACGACAAGCGCGAATTGTTTTGACTTCTCCAAGTTGGTGGAAGTAGCCATGCATATTGAAAGAGAATTGGATGAGGACAAGAATAGTTCTAAGGAAAAGAGATTAGACACAAAAATGGGCGTAGTAAAGAGAGGCTATGAAGGGTTTGGTAAGCAAGCTAAATTTGGTTTTGGTTGTGGATCGCATTGGATCGACGATAAAGAAGTTCTTTGA

mRNA sequence

ATGAAACTCACGAAGTATGTGATGTCCTTTGTAATGGATAAAGAAGTAAAGTGTAAGCATTTTGAAGGAGGTCTAAGGACGGCCATCCGAGTGCCAGTGACGACAAGCGCGAATTGTTTTGACTTCTCCAAGTTGGTGGAAGTAGCCATGCATATTGAAAGAGAATTGGATGAGGACAAGAATAGTTCTAAGGAAAAGAGATTAGACACAAAAATGGGCGTAGTAAAGAGAGGCTATGAAGGGTTTGGTAAGCAAGCTAAATTTGGTTTTGGTTGTGGATCGCATTGGATCGACGATAAAGAAGTTCTTTGA

Coding sequence (CDS)

ATGAAACTCACGAAGTATGTGATGTCCTTTGTAATGGATAAAGAAGTAAAGTGTAAGCATTTTGAAGGAGGTCTAAGGACGGCCATCCGAGTGCCAGTGACGACAAGCGCGAATTGTTTTGACTTCTCCAAGTTGGTGGAAGTAGCCATGCATATTGAAAGAGAATTGGATGAGGACAAGAATAGTTCTAAGGAAAAGAGATTAGACACAAAAATGGGCGTAGTAAAGAGAGGCTATGAAGGGTTTGGTAAGCAAGCTAAATTTGGTTTTGGTTGTGGATCGCATTGGATCGACGATAAAGAAGTTCTTTGA

Protein sequence

MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDKNSSKEKRLDTKMGVVKRGYEGFGKQAKFGFGCGSHWIDDKEVL*

Homology

[Close]

BLAST of CSPI03G22320 vs. ExPASy TrEMBL
Match: A0A5D3DW18 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00250 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-12
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDK 60
           MK+ KY MS+V+D++ K KHF+ GLRT IR+PVT+S N    S+LVE AM +E  L ++K
Sbjct: 84  MKIAKYAMSYVVDEKEKSKHFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEK 143

Query: 61  NSSKEKRL 69
            SSKEKRL
Sbjct: 144 KSSKEKRL 151

[Close]

BLAST of CSPI03G22320 vs. ExPASy TrEMBL
Match: A0A5A7U111 (Zinc finger CCHC domain-containing protein 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00470 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 2   KLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDKN 61
           KL KYV+ F+MD+E K K+FE GL T IRV VT + N  +F ++VE AM +E  LDE + 
Sbjct: 117 KLAKYVIPFIMDEEDKFKNFEKGLSTTIRVLVTANENWSNFCRMVEAAMRVENTLDEGRK 176

Query: 62  SSKEKRLDTKMGVVKRGYEGFGKQAKFGFGCGSHWIDDK 101
           S KE      +   K   EGF ++ KF    GS W +++
Sbjct: 177 SPKE------INKGKGSEEGFSRKTKFRLDQGSQWDNNR 209

[Close]

BLAST of CSPI03G22320 vs. ExPASy TrEMBL
Match: A0A5A7TPS8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00530 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDK 60
           M+L +Y ++F+M++E KC HFE GLRT+IR  VTT A   DFSKLVE A+ IE+ L E+ 
Sbjct: 100 MELARYAITFIMNEEDKCMHFEDGLRTSIRALVTTCAGSLDFSKLVEAAIRIEKCLVEED 159

Query: 61  NSSKEKRLDTKMGVVKRGYEGFGKQAK----FGFGCGSHWIDDK 101
                +  ++   + +R  +   K+A+    F F  GSHW  DK
Sbjct: 160 EEKMVEGEESSPLLDRRQEKEDNKEAEKWTMFFFRQGSHWFGDK 203

[Close]

BLAST of CSPI03G22320 vs. ExPASy TrEMBL
Match: A0A5A7UNY4 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001510 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDK 60
           MK+ KY MS+V+D++ K K F+ GLRT IR+PVT+S N    S+LVE AM +E  L ++K
Sbjct: 84  MKIAKYAMSYVVDEKEKSKRFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEK 143

Query: 61  NSSKEKRL 69
            SSKEKRL
Sbjct: 144 KSSKEKRL 151

[Close]

BLAST of CSPI03G22320 vs. ExPASy TrEMBL
Match: A0A5A7TP59 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00610 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIER---ELD 60
           M+L +YV++F+M++E KC HFE GLRT+IR  VT      DFSKLVE A+ IE+   E D
Sbjct: 41  MELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIRIEKCLVEED 100

Query: 61  EDKN-SSKEKRLDTKMGVVKRGYEGFGKQAKFGFGCGSHWIDDK 101
           E+K    +E       G  K   +   K   F F  GSHW  DK
Sbjct: 101 EEKMVEGEESSPLLDRGQEKEDNKEAEKWTMFYFRQGSHWFSDK 144

[Close]

BLAST of CSPI03G22320 vs. NCBI nr
Match: TYK27694.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 7.3e-12
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDK 60
           MK+ KY MS+V+D++ K KHF+ GLRT IR+PVT+S N    S+LVE AM +E  L ++K
Sbjct: 84  MKIAKYAMSYVVDEKEKSKHFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEK 143

Query: 61  NSSKEKRL 69
            SSKEKRL
Sbjct: 144 KSSKEKRL 151

[Close]

BLAST of CSPI03G22320 vs. NCBI nr
Match: KAA0047169.1 (zinc finger CCHC domain-containing protein 5-like [Cucumis melo var. makuwa] >TYK01164.1 zinc finger CCHC domain-containing protein 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-11
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 2   KLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDKN 61
           KL KYV+ F+MD+E K K+FE GL T IRV VT + N  +F ++VE AM +E  LDE + 
Sbjct: 117 KLAKYVIPFIMDEEDKFKNFEKGLSTTIRVLVTANENWSNFCRMVEAAMRVENTLDEGRK 176

Query: 62  SSKEKRLDTKMGVVKRGYEGFGKQAKFGFGCGSHWIDDK 101
           S KE      +   K   EGF ++ KF    GS W +++
Sbjct: 177 SPKE------INKGKGSEEGFSRKTKFRLDQGSQWDNNR 209

[Close]

BLAST of CSPI03G22320 vs. NCBI nr
Match: KAA0043551.1 (uncharacterized protein E6C27_scaffold335G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-11
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDK 60
           M+L +Y ++F+M++E KC HFE GLRT+IR  VTT A   DFSKLVE A+ IE+ L E+ 
Sbjct: 100 MELARYAITFIMNEEDKCMHFEDGLRTSIRALVTTCAGSLDFSKLVEAAIRIEKCLVEED 159

Query: 61  NSSKEKRLDTKMGVVKRGYEGFGKQAK----FGFGCGSHWIDDK 101
                +  ++   + +R  +   K+A+    F F  GSHW  DK
Sbjct: 160 EEKMVEGEESSPLLDRRQEKEDNKEAEKWTMFFFRQGSHWFGDK 203

[Close]

BLAST of CSPI03G22320 vs. NCBI nr
Match: KAA0056006.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-11
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIERELDEDK 60
           MK+ KY MS+V+D++ K K F+ GLRT IR+PVT+S N    S+LVE AM +E  L ++K
Sbjct: 84  MKIAKYAMSYVVDEKEKSKRFKEGLRTTIRMPVTSSTNWLTISRLVEAAMRVESTLAKEK 143

Query: 61  NSSKEKRL 69
            SSKEKRL
Sbjct: 144 KSSKEKRL 151

[Close]

BLAST of CSPI03G22320 vs. NCBI nr
Match: KAA0043557.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MKLTKYVMSFVMDKEVKCKHFEGGLRTAIRVPVTTSANCFDFSKLVEVAMHIER---ELD 60
           M+L +YV++F+M++E KC HFE GLRT+IR  VT      DFSKLVE A+ IE+   E D
Sbjct: 41  MELARYVITFIMNEEDKCTHFEEGLRTSIRALVTACVGSLDFSKLVEAAIRIEKCLVEED 100

Query: 61  EDKN-SSKEKRLDTKMGVVKRGYEGFGKQAKFGFGCGSHWIDDK 101
           E+K    +E       G  K   +   K   F F  GSHW  DK
Sbjct: 101 EEKMVEGEESSPLLDRGQEKEDNKEAEKWTMFYFRQGSHWFSDK 144

The following BLAST results are available for this feature:

BLAST of CSPI03G22320 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G22320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DW18	3.5e-12	57.35	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7U111	1.7e-11	43.43	Zinc finger CCHC domain-containing protein 5-like OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7TPS8	1.7e-11	42.31	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UNY4	3.0e-11	55.88	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5A7TP59	5.1e-11	44.23	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI03G22320 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27694.1	7.3e-12	57.35	A-kinase anchor protein 12 [Cucumis melo var. makuwa]	[more]
KAA0047169.1	3.6e-11	43.43	zinc finger CCHC domain-containing protein 5-like [Cucumis melo var. makuwa] >TY...	[more]
KAA0043551.1	3.6e-11	42.31	uncharacterized protein E6C27_scaffold335G00530 [Cucumis melo var. makuwa]	[more]
KAA0056006.1	6.2e-11	55.88	A-kinase anchor protein 12 [Cucumis melo var. makuwa]	[more]
KAA0043557.1	1.1e-10	44.23	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G22320 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G22320.1	CSPI03G22320.1	mRNA