CSPI03G22110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G22110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	replication protein A 32 kDa subunit A-like
Location	Chr3: 18516420 .. 18517197 (-)
RNA-Seq Expression	CSPI03G22110
Synteny	CSPI03G22110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGAAGAAGATTCCACGGTGGCAACGTCGAAGTTGTGACAGGTATTCTAATATGGAATGTGTTGGATATTGGGATCGATTTTAATTTCTTTAAAAAAGTTATAAACTAATTCTTTTTATATGATGTATAGAAATCATTCTTTTGGTTTATTGTGTTCAATGAAATTCCTCTTTTGATTTCCCCAATTAGTAAAATACGAACAAGCAAACCTCTGGAAAACTAATATCTTGTTAATGATATATAGTCTCTCTTTGTTAATACATAATTGCCTAAAATTTCTGCTTAAAACTACAATTGAAATAATTGATTTTTTCCAAGCTTGGTCACTAGGAAAGGACCAATATCAAGTAATTATTTGGGTAGTGAAAATCATCTAATCCCAAATATTCTGTCCCTGTTGGACATTTGATCAACTGACATGATGATTGAATTTGGTTATGCTTTGACAGGCTTGTTACAAACTTTGATGAAATTACATTCCACTTTATTGAATGCATACACATGCTGCTTGCGGAATTCCAAGTTACAGGTATCGGTTCCTAGAACTGACTTGGTAGTTGTTCTTCTAACTTGTAACTTTGATTTTTCTTTAGTCAACAAAATAATTATTAATGAATATCATAATTGTCAATTCATTTGTCTTAAACTGCTAGAATCCCAAAGGCGATGGATCAACACAACTCCAAACTCCAGATTCACTTATGAAGACTCCATTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAACAATAGTAAGTGTTAATTAA

mRNA sequence

ATGTCGAGAAGAAGATTCCACGGTGGCAACGTCGAAGTTGTGACAGGCTTGTTACAAACTTTGATGAAATTACATTCCACTTTATTGAATGCATACACATGCTGCTTGCGGAATTCCAAGTTACAGAATCCCAAAGGCGATGGATCAACACAACTCCAAACTCCAGATTCACTTATGAAGACTCCATTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAACAATAGTAAGTGTTAATTAA

Coding sequence (CDS)

ATGTCGAGAAGAAGATTCCACGGTGGCAACGTCGAAGTTGTGACAGGCTTGTTACAAACTTTGATGAAATTACATTCCACTTTATTGAATGCATACACATGCTGCTTGCGGAATTCCAAGTTACAGAATCCCAAAGGCGATGGATCAACACAACTCCAAACTCCAGATTCACTTATGAAGACTCCATTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAACAATAGTAAGTGTTAATTAA

Protein sequence

MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVSVN*

Homology

[Close]

BLAST of CSPI03G22110 vs. ExPASy TrEMBL
Match: A0A0A0L7B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G357090 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.3e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60
          MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK
Sbjct: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60

Query: 61 TPLQNGSSGYHTTSSTIVSVN 82
          TPLQNGSSGYHTTSSTIVSVN
Sbjct: 61 TPLQNGSSGYHTTSSTIVSVN 81

[Close]

BLAST of CSPI03G22110 vs. ExPASy TrEMBL
Match: A0A1S3CR64 (replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503766 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-10
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KGDGSTQLQT DS++KTP+QNGSSGYHTTSS I S
Sbjct: 155 LRNSKLQNLKGDGSTQLQTSDSIVKTPVQNGSSGYHTTSSAIPS 198

[Close]

BLAST of CSPI03G22110 vs. ExPASy TrEMBL
Match: A0A0A0LEG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KG+GSTQLQT DS++KTP+QNGS+GYHTTSS I S
Sbjct: 155 LRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPS 198

[Close]

BLAST of CSPI03G22110 vs. ExPASy TrEMBL
Match: A0A6J1F8S8 (replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC111443128 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN  G GSTQ Q+ DS++KTP+QNGSSGY T SS + S
Sbjct: 155 LRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPS 198

[Close]

BLAST of CSPI03G22110 vs. ExPASy TrEMBL
Match: A0A6J1IMU1 (replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC111476648 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-06
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIV 79
           LRNSKLQN  G GSTQ Q+ DS++KTP+QNGSSGY T SS  V
Sbjct: 155 LRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVSV 197

[Close]

BLAST of CSPI03G22110 vs. NCBI nr
Match: XP_008466326.1 (PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-10
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KGDGSTQLQT DS++KTP+QNGSSGYHTTSS I S
Sbjct: 155 LRNSKLQNLKGDGSTQLQTSDSIVKTPVQNGSSGYHTTSSAIPS 198

[Close]

BLAST of CSPI03G22110 vs. NCBI nr
Match: XP_004136317.1 (replication protein A 32 kDa subunit A [Cucumis sativus] >KGN60158.1 hypothetical protein Csa_001153 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KG+GSTQLQT DS++KTP+QNGS+GYHTTSS I S
Sbjct: 155 LRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPS 198

[Close]

BLAST of CSPI03G22110 vs. NCBI nr
Match: KAG7024504.1 (Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-06
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN  G GSTQ Q+ DS++KTP+QNGSSGY T SS + S
Sbjct: 155 LRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPS 198

[Close]

BLAST of CSPI03G22110 vs. NCBI nr
Match: XP_022936562.1 (replication protein A 32 kDa subunit A-like [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-06
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN  G GSTQ Q+ DS++KTP+QNGSSGY T SS + S
Sbjct: 155 LRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPS 198

[Close]

BLAST of CSPI03G22110 vs. NCBI nr
Match: KAG6591621.1 (Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-06
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN  G GSTQ Q+ DS++KTP+QNGSSGY T SS + S
Sbjct: 155 LRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPS 198

The following BLAST results are available for this feature:

BLAST of CSPI03G22110 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G22110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7B3	3.3e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G357090 PE=4 SV=1	[more]
A0A1S3CR64	2.6e-10	84.09	replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A0A0LEG7	2.2e-09	79.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1	[more]
A0A6J1F8S8	3.9e-06	68.18	replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IMU1	6.6e-06	69.77	replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CSPI03G22110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466326.1	5.4e-10	84.09	PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]	[more]
XP_004136317.1	4.5e-09	79.55	replication protein A 32 kDa subunit A [Cucumis sativus] >KGN60158.1 hypothetica...	[more]
KAG7024504.1	8.0e-06	68.18	Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022936562.1	8.0e-06	68.18	replication protein A 32 kDa subunit A-like [Cucurbita moschata]	[more]
KAG6591621.1	8.0e-06	68.18	Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of CSPI03G22110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G22110.1	CSPI03G22110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0035861	site of double-strand break
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003697	single-stranded DNA binding