CSPI03G21980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA polymerase sigma factor sigE
Location	Chr3: 18427284 .. 18431881 (-)
RNA-Seq Expression	CSPI03G21980
Synteny	CSPI03G21980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTTTAAGCTTCTGCTCTCTCATTCTGCCAAACAAACCAAAAAGAACCATAATAATAAAAAAAAAAAAAATCTTTGCTTTTCCTTTATCTTTTGAAGGTTAGTGTTTCTCAACTTAGTTTTCTTTTCCTGTTTTATTTTGGATGAACCTGTTAGTATTCAATCTTCTGGTTGTTTTTTTGGGCAAATTTAGAGAATCTTGCTTTTTGTGTGAACCTTCTTCAACATCGGGGTTTTAGGTTCAAATGGTTGGATTATTGTGTGTTTATGAACATTGTCTCTTAGATTAGATCCCCCACAATAAACCTACATGTATAAACACCTAAAGTTTCAAGCTTTGTAATTCCCCAGTTTGTTCTAACCGTAAAGAAGATGAAGTTTGGGGGGTGAAAAGGACTTCTTTACGTTACTTTTAAGGAAAATGGTATTAGCTTTGTGCTAAAACTAACTACAAAAGGTGGTATTTCTTCTACCTGTGATGACTATTAGCTTGTTGTACCAAAATGGATGCTCTTAAGGATTTATGCTAATGAATTGTTTGGTGATTCATCCCCAAGCGAAAATTTAGTCCTTTCCTTTCTGAAGACTTTTAGCCATTGTATTGTTTCGAGGTTAGGATTAGAATGATAACAGTTTCATTTACCATTTTATTGTATGCTGCTGGAGCTTCTATATTGACTTCTTTTTCTTGTTTTTAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGAAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAAGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGTGAGGGATAAGAATTTGAATGCAGGAAACTGATTTCAATGGAAGTTTGAATAAAAGTCATTCTTGTTCACTATCAATTAACGTCTTCCTCTATCAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGGTAAGAGTCACTTCATTCCCACAATTAAAGCATCATTGCTTCAGGCTTCCATGATACCATCACATCCTTCAAATGGCATACGAGGATATATACTCAATGCCTTTTCTATCCCATGAAAATAAGTTAATTTCAATTCTCATCCATCACCCATGGAATTTGTCAGAAACCTACAAGATTTTTATGATTGATATGTTTGCTTGCGATATTCTATGTAATCACTACCTAAGATAACCTATTGAAGAAAGTGCAACTAGCCTGAATATAGTTGTTATCGATTTGATATATATGTACATTGTACAGTGTCTACTGCAAAAAGGATGAAACTAATGGTTAGATTTTACATCTGTTGCAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCCAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTTAGTTCTTAGTCTACTTCAGCCTTTTCATTCCTCAACTTTTTATCACAGCAATGGATTACTTGCATTGCTCAATCATCATTGTACTTTTCTCCATGACATCATATTATTGCTGCTAAATGTGAAACAAATAAAAGAAGTTATCTCGAATAGAGAAGAAACAGAGAGAAGGATAGTAAGGCAATATTTAAACTTTAAACTAAAATCTCATATTATGAGTTTGATCTTGACATCTCTATGTAATAATTACATAAGAAAAAAGAATAAGATACCAACGAAATCTTGAGGGTGTAGATTCCTGCCACCGTCTGAAGGGGAAGGAAGGTTTTCTATCCTTCTAGTTGTAGTTCAAAGGAAAAAAAAAAAAAATGACTCTTAAAGTTTTGAAGCTCTGCATTTCAACTGACTGAAAGTGCAATAAAATTCATGCCAGAGTAGTTAGAAATTTTAGGAAGCAAGCTTTACGATAAATCATTAGCTCAGATTGCAAGATTTCTTTTACAGGTTCATATTGGCATCAATTAAAAAGTTGAACTGAATCTCATTACTTTGTTATGGTTTAAATCTAAAGCATCTTCTAAATGATTTTTGGTGCGTATGATGGCATAGATTATTGAGATTGGACCTTTCTTAGTGCAGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGGTAATTTTCTTGTACAAATCTTGTTAATACGTTCCCTTTCTCCTCCAAAGCACAACGTTTTTTTTTTTCTTTTTTATATATGCATTTGTTCAATTAATAGTACAGGACAATATTAAATTCTAAATAGACAACCACCGTGTATTGAACCCCCATTACCTCTTAGCTCTTTATCGAACTCAAACATTTTATTCACTACTAGGTCAACCCACGGTGGTTCCCTCTAACCACAATGTTAATCATCTTAAAAGAATGTTTGGATTTTGAACATAGCCGGAGATGTTTTCTTTCATATTTCTGCTAAATATTTATCACCCTTGTTTCCATGATTTAACTTGTGAAATATATCCGGTAAAAATGTATTCTCATCATGAATTAAAGGTGAAACGCATCTTACCGGTATGTTATACATCTATTTTGTTTGTTTGAGATGCAACTGATTTGAACAGCTTTTGGTAGATTTCTTAGGCATTGCAGACATGGGATTTTACTTTTAACTCAAAATTGTTGGGCGGATGGGAGCCGTTTTTCTTGAAATGTCATACATTGCTGATATTTATATTTTAATTAATAACATGTTCTTAAAAACTTTTCCAGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCCAGAGTCGATTACCTTCGTAGGTATTTAATCTGAACGGATGAGAACATCATGCTTTGTTTCAATGATCTTGTACTCTGGATAATTTGTTATGGCCAAAACATCTCAAGGGGCAAGAGATTTGTACCATATATTTGTAACTACTTGAATATAGAAACCTCACACCATATGATTCATATTTTGAAGGACATTACAATTGGTAGCTCTGCTACTTTCTTTGTAGGAAGAAGAGAGTTTTATAGGAGAAAAATAGCGACCCCCCCTGTATACACAGTATTATGTTCTAGAAATATATTATACTGTTTACAAGTTACACCTCTGACTGCTTTCTTAGTTTCTACTGCAAAAAGGAACAAAGCAAGGAAAGCAGAGCTAGTGGTTTTCACTTTCCAGTTTCATTTCTTCTTATCTTTAGAGGAAGAAACTTCGTTGGCTATCAGTATCAACACGAGAAAGGATACAACTTTTTCTTTTGGAAGAGATTTTATGGATACATTCAATATGCAGTCACATCATAGATATATCTAGAAGCTCAACCATTCTACAGAGACATTTAAAATAGGAAAACTAGTTTTTCCTGTTTCGTTTCAAGACTGAC

mRNA sequence

GTCATTTTAAGCTTCTGCTCTCTCATTCTGCCAAACAAACCAAAAAGAACCATAATAATAAAAAAAAAAAAAATCTTTGCTTTTCCTTTATCTTTTGAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGAAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAAGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCCAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCCAGAGTCGATTACCTTCGTAGGTATTTAATCTGAACGGATGAGAACATCATGCTTTGTTTCAATGATCTTGTACTCTGGATAATTTGTTATGGCCAAAACATCTCAAGGGGCAAGAGATTTGTACCATATATTTGTAACTACTTGAATATAGAAACCTCACACCATATGATTCATATTTTGAAGGACATTACAATTGGTAGCTCTGCTACTTTCTTTGTAGGAAGAAGAGAGTTTTATAGGAGAAAAATAGCGACCCCCCCTGTATACACAGTATTATGTTCTAGAAATATATTATACTGTTTACAAGTTACACCTCTGACTGCTTTCTTAGTTTCTACTGCAAAAAGGAACAAAGCAAGGAAAGCAGAGCTAGTGGTTTTCACTTTCCAGTTTCATTTCTTCTTATCTTTAGAGGAAGAAACTTCGTTGGCTATCAGTATCAACACGAGAAAGGATACAACTTTTTCTTTTGGAAGAGATTTTATGGATACATTCAATATGCAGTCACATCATAGATATATCTAGAAGCTCAACCATTCTACAGAGACATTTAAAATAGGAAAACTAGTTTTTCCTGTTTCGTTTCAAGACTGAC

Coding sequence (CDS)

ATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGAAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAAGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCCAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCCAGAGTCGATTACCTTCGTAGGTATTTAATCTGA

Protein sequence

MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKDGRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI*

Homology

[Close]

BLAST of CSPI03G21980 vs. ExPASy Swiss-Prot
Match: Q9ZNX9 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIGE PE=1 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 1.9e-170
Identity = 334/554 (60.29%), Postives = 403/554 (72.74%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVES 60
           MGVV++SS+AAR+P  LG     H S+LK+PSIVAFKAD  +N+ L + P EQV +P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRRKKRSGNTSKPLKRVKAVLI---DEATPCSLDLDYNEAAAKLENIFKLSPMTE---D 120
           +N  KKR     KP K  K  L    + A  CSL +DYNEAAA+LE+I+KLSP T    +
Sbjct: 61  HN-EKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVE 120

Query: 121 SDKKCKDGRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 180
            D +    ++K  ++R +K +      +VRN  K+ KR+ LDKRIALK   + K V    
Sbjct: 121 DDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASV 180

Query: 181 KQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSAS 240
            +K TK +                                     E+++I+RLVRDYSAS
Sbjct: 181 DKKVTKRQ------------------------------------QEEEKIERLVRDYSAS 240

Query: 241 TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATN 300
            D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL+EV++ LQK LGREP E E+A   N
Sbjct: 241 NDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEIN 300

Query: 301 MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 360
           M   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF +F +GPKFQDLCQAG++GLITAI
Sbjct: 301 MTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAI 360

Query: 361 DRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 420
           DRFEPKRKFRLSTY LFWIRHAIIRSMT S+FTRV FGL+SVRVEI +AK EL  E+ R 
Sbjct: 361 DRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRP 420

Query: 421 PTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPA 480
           PTE E+  ++ I+ ERY EV+RA KPV SL+S+HS T EE INGITDV+G G +N RQPA
Sbjct: 421 PTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQPA 480

Query: 481 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 540
           LLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKL
Sbjct: 481 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 517

Query: 541 KHPARVDYLRRYLI 548
           KH ARVDYLR+Y++
Sbjct: 541 KHQARVDYLRQYIV 517

[Close]

BLAST of CSPI03G21980 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.7e-38
Identity = 112/346 (32.37%), Postives = 180/346 (52.02%), Query Frame = 0


Query: 202 KEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKL 261
           K GKA  S R+ +  K    E            D + L  +++    +L + E   L + 
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTE------------DSIRLYLQEIGRIRLLRADEEIELARK 118

Query: 262 VQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLV 321
           +  +  L  V+E L + L R+P + E A A  + +   R +L +GR A++K+++ NLRLV
Sbjct: 119 IADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLV 178

Query: 322 LFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMT 381
           + +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA +WIR AI R++ 
Sbjct: 179 VSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 238

Query: 382 LSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPV 441
             S T R+   L      I++    L  E+ R PTE EI  ++ ++ E+   + ++ +  
Sbjct: 239 DQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP 298

Query: 442 YSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGL 501
            SL +      +  +    + +G   +++    LLR  L+ VLDSL P+E  V+R RYGL
Sbjct: 299 ISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGL 358

Query: 502 DGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 547
           D    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Sbjct: 359 DDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of CSPI03G21980 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-37
Identity = 101/299 (33.78%), Postives = 165/299 (55.18%), Query Frame = 0


Query: 249 VLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRA 308
           +L + E   L + +  + AL  +++EL + L R P++ E A A +  + + RR+L  GR 
Sbjct: 103 LLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRR 162

Query: 309 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 368
           A++K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ ++ ++ STYA
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 222

Query: 369 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQ 428
            +WIR AI R++   S T R+   L      I++    L  E+ R PTE EI  ++ ++ 
Sbjct: 223 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 282

Query: 429 ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLK 488
           E+   + ++ +   SL +      +  +    + +G   ++     LLR  L+ VL +L 
Sbjct: 283 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLS 342

Query: 489 PKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 547
           P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ Y+
Sbjct: 343 PRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of CSPI03G21980 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.2e-35
Identity = 93/263 (35.36%), Postives = 145/263 (55.13%), Query Frame = 0


Query: 285 EGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQA 344
           E E +   N N    RR+L + R A++K+++ NLRLV+ +  KY      G  FQDL Q 
Sbjct: 165 ENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQE 224

Query: 345 GVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAK 404
           G  GLI A ++F+ ++ ++ STYA +WIR AI R++   S T R+   L      I++  
Sbjct: 225 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 284

Query: 405 LELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEG 464
             L  E+ R PTE EI  K+ ++ E+   + ++ +   SL +      +  +    + +G
Sbjct: 285 KLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG 344

Query: 465 TGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVR 524
              ++     LLR  L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R
Sbjct: 345 ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 404

Query: 525 KHEVKALMKLKHPARVDYLRRYL 547
           + E KAL KL+HP R   L+ Y+
Sbjct: 405 QIEAKALRKLRHPNRNSILKEYI 424

[Close]

BLAST of CSPI03G21980 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-33
Identity = 89/248 (35.89%), Postives = 139/248 (56.05%), Query Frame = 0


Query: 300 RRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPK 359
           +R+L  GR A+ K+++ NLRLV+ +  KY      G  FQDL Q G  GLI A ++F+ +
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHE 230

Query: 360 RKFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGE 419
           + ++ STYA +WIR AI R++   S T R+   L      I++    L  E+ R PTE E
Sbjct: 231 KGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEE 290

Query: 420 ITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLA 479
           I  K+ ++ E+   + ++ +   SL +      +  +    + +G   ++     LLR  
Sbjct: 291 IATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLRED 350

Query: 480 LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 539
           L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R
Sbjct: 351 LENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 410

Query: 540 VDYLRRYL 547
              L+ Y+
Sbjct: 411 NSILKEYI 415

[Close]

BLAST of CSPI03G21980 vs. ExPASy TrEMBL
Match: A0A0A0LCQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354500 PE=3 SV=1)

HSP 1 Score: 1037.3 bits (2681), Expect = 2.2e-299
Identity = 545/547 (99.63%), Postives = 546/547 (99.82%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDK+CKD
Sbjct: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQKRSKKSANRP DGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN
Sbjct: 121 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]

BLAST of CSPI03G21980 vs. ExPASy TrEMBL
Match: A0A5A7U8E5 (RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00690 PE=3 SV=1)

HSP 1 Score: 990.3 bits (2559), Expect = 3.1e-285
Identity = 522/547 (95.43%), Postives = 531/547 (97.07%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD + KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQ+RSKKS  RPSDGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]

BLAST of CSPI03G21980 vs. ExPASy TrEMBL
Match: A0A5D3BY73 (RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00110 PE=3 SV=1)

HSP 1 Score: 989.2 bits (2556), Expect = 7.0e-285
Identity = 521/547 (95.25%), Postives = 531/547 (97.07%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD + KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQ+RSK+S  RPSDGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKRSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]

BLAST of CSPI03G21980 vs. ExPASy TrEMBL
Match: A0A1S3CQ87 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503014 PE=3 SV=1)

HSP 1 Score: 894.4 bits (2310), Expect = 2.3e-256
Identity = 479/547 (87.57%), Postives = 491/547 (89.76%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD + KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQ+RSKKS  RPSDGIVRN+TKRIKRLDLDKRIALKNK++               
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKA-------------- 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
                                 E K+   +++ KETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 ----------------------ERKSGSFIKETKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 511

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 511

[Close]

BLAST of CSPI03G21980 vs. ExPASy TrEMBL
Match: A0A6J1E518 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 863.6 bits (2230), Expect = 4.4e-247
Identity = 460/547 (84.10%), Postives = 482/547 (88.12%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRLG KFSN+ S LKRPSIVAFK DKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR +KR+G +SK LKRVKAVLIDEATPC+ D+DYNEAAAKLENIFKLSP+TED+D + +D
Sbjct: 61  NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENED 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GR KRGQ+R KK   RP DG+VRNQTKRIKRLDLD                         
Sbjct: 121 GRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLD------------------------- 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
                        KRIALKSNKEGK+ PSL KQK+TK+E DEID LVR+YSASTDLVSLD
Sbjct: 181 -------------KRIALKSNKEGKSAPSLSKQKDTKSEADEIDDLVRNYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL++ QEELQKGLGREPTEGELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKGLGREPTEGELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           +FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE E+ 
Sbjct: 361 RFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEVI 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEE I+GI DVEGTGGDNRRQ ALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGIADVEGTGGDNRRQSALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 509

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 509

[Close]

BLAST of CSPI03G21980 vs. NCBI nr
Match: XP_031739380.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1 [Cucumis sativus] >KAE8650643.1 hypothetical protein Csa_010082 [Cucumis sativus])

HSP 1 Score: 1037.3 bits (2681), Expect = 4.6e-299
Identity = 545/547 (99.63%), Postives = 546/547 (99.82%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 39  MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 98

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDK+CKD
Sbjct: 99  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 158

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQKRSKKSANRP DGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN
Sbjct: 159 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 218

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 219 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 278

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR
Sbjct: 279 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 338

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 339 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 398

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT
Sbjct: 399 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 458

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 459 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 518

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 519 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 578

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 579 YLRRYLI 585

[Close]

BLAST of CSPI03G21980 vs. NCBI nr
Match: XP_011651413.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 1037.3 bits (2681), Expect = 4.6e-299
Identity = 545/547 (99.63%), Postives = 546/547 (99.82%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDK+CKD
Sbjct: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQKRSKKSANRP DGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN
Sbjct: 121 GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]

BLAST of CSPI03G21980 vs. NCBI nr
Match: KAA0050456.1 (RNA polymerase sigma factor sigE [Cucumis melo var. makuwa])

HSP 1 Score: 990.3 bits (2559), Expect = 6.5e-285
Identity = 522/547 (95.43%), Postives = 531/547 (97.07%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD + KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQ+RSKKS  RPSDGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]

BLAST of CSPI03G21980 vs. NCBI nr
Match: TYK03136.1 (RNA polymerase sigma factor sigE [Cucumis melo var. makuwa])

HSP 1 Score: 989.2 bits (2556), Expect = 1.4e-284
Identity = 521/547 (95.25%), Postives = 531/547 (97.07%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD + KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQ+RSK+S  RPSDGIVRN+TKRIKRLDLDKRIALKNKKEG+AVALL+KQKDTKN
Sbjct: 121 GRSKRGQQRSKRSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKKEGRAVALLKKQKDTKN 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
           EADEIDGL L+LEKRIALKSNKEGKA PSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 EADEIDGLRLDLEKRIALKSNKEGKAAPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 547

[Close]

BLAST of CSPI03G21980 vs. NCBI nr
Match: XP_008465379.1 (PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 894.4 bits (2310), Expect = 4.8e-256
Identity = 479/547 (87.57%), Postives = 491/547 (89.76%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
           MGVVTVSS+AARTPFRL  KFSNH STLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKKCKD 120
           NR KKRSGNTSKPLKRVKAVLIDEAT CSLDLDYNEAAAKLENIFKLSPMTEDSD + KD
Sbjct: 61  NRSKKRSGNTSKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKD 120

Query: 121 GRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKN 180
           GRSKRGQ+RSKKS  RPSDGIVRN+TKRIKRLDLDKRIALKNK++               
Sbjct: 121 GRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKA-------------- 180

Query: 181 EADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLD 240
                                 E K+   +++ KETKNEDDEIDRLVRDYSASTDLVSLD
Sbjct: 181 ----------------------ERKSGSFIKETKETKNEDDEIDRLVRDYSASTDLVSLD 240

Query: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVR 300
           WKKMKIPPVLPSSEHTRLFKLVQPMKAL+EVQEELQK LGREPTE ELANATNMNVIQVR
Sbjct: 241 WKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNVIQVR 300

Query: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKR 360
           RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFA+GPKFQDLCQAGVKGLITAIDRFEPKR
Sbjct: 301 RQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRFEPKR 360

Query: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEIT 420
           KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTE EI 
Sbjct: 361 KFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEII 420

Query: 421 AKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480
           AKVGIS ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD
Sbjct: 421 AKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALD 480

Query: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 540
           DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD
Sbjct: 481 DVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 511

Query: 541 YLRRYLI 548
           YLRRYLI
Sbjct: 541 YLRRYLI 511

[Close]

BLAST of CSPI03G21980 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 600.5 bits (1547), Expect = 1.3e-171
Identity = 334/554 (60.29%), Postives = 403/554 (72.74%), Query Frame = 0


Query: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTL-VSPHEQVTLPVES 60
           MGVV++SS+AAR+P  LG     H S+LK+PSIVAFKAD  +N+ L + P EQV +P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRRKKRSGNTSKPLKRVKAVLI---DEATPCSLDLDYNEAAAKLENIFKLSPMTE---D 120
           +N  KKR     KP K  K  L    + A  CSL +DYNEAAA+LE+I+KLSP T    +
Sbjct: 61  HN-EKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVE 120

Query: 121 SDKKCKDGRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 180
            D +    ++K  ++R +K +      +VRN  K+ KR+ LDKRIALK   + K V    
Sbjct: 121 DDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASV 180

Query: 181 KQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSAS 240
            +K TK +                                     E+++I+RLVRDYSAS
Sbjct: 181 DKKVTKRQ------------------------------------QEEEKIERLVRDYSAS 240

Query: 241 TDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATN 300
            D+VSLDWKKMKIPPVL S+EH  LFKL+QPMKAL+EV++ LQK LGREP E E+A   N
Sbjct: 241 NDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEIN 300

Query: 301 MNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAI 360
           M   +V++++E+GRAARNKLIKHNLRLVLFV+NKYF +F +GPKFQDLCQAG++GLITAI
Sbjct: 301 MTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAI 360

Query: 361 DRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRL 420
           DRFEPKRKFRLSTY LFWIRHAIIRSMT S+FTRV FGL+SVRVEI +AK EL  E+ R 
Sbjct: 361 DRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRP 420

Query: 421 PTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPA 480
           PTE E+  ++ I+ ERY EV+RA KPV SL+S+HS T EE INGITDV+G G +N RQPA
Sbjct: 421 PTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQPA 480

Query: 481 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKL 540
           LLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKL
Sbjct: 481 LLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 517

Query: 541 KHPARVDYLRRYLI 548
           KH ARVDYLR+Y++
Sbjct: 541 KHQARVDYLRQYIV 517

[Close]

BLAST of CSPI03G21980 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-31
Identity = 127/458 (27.73%), Postives = 209/458 (45.63%), Query Frame = 0


Query: 99  AKLENIFKLSPMTEDSDKKCKDGRSKRGQKRSKKSANRPSDGIVRNQTKRIKRLDLDKRI 158
           AK   +FK S  T        D RSK  Q   K+ A     GI+ +       +  DK  
Sbjct: 125 AKDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERA-----GILGHLAVSDNGIVSDKIT 184

Query: 159 ALKNKKEGKAVALLRKQKDTKNEADEIDGLL-------LNLEKRIALKSNKEGKAVPSLR 218
           A  + KE        KQ++ +   ++    L          + R A    K    +PS++
Sbjct: 185 ASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVK 244

Query: 219 KQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEV 278
                K +     RLV       D +           +L   E   L   +Q +  L  +
Sbjct: 245 TGSSPKKK-----RLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERL 304

Query: 279 QEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFED 338
           Q EL +  GR+PT  + A+A  ++   +R+++  G   ++K+IK N+RLV+ +   Y   
Sbjct: 305 QTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY--- 364

Query: 339 FASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMT-LSSFTRVSF 398
             +G   QDL Q G +GL+   ++F+  + F+ STYA +WI+ A+ +S++  S   R+ F
Sbjct: 365 QGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPF 424

Query: 399 GLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTT 458
            +      ++ A+ +L  E  + P   EI    G+S +R + V+ + KP  SL  +    
Sbjct: 425 HMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMN 484

Query: 459 SE-ELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLG 518
              +    I D E    ++      +R  LD VLDSL  +E  VIR R+G++    +TL 
Sbjct: 485 QNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQ 544

Query: 519 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 548
           EI   + +SRE VR+ E  A  KLK+  R ++L++YL+
Sbjct: 545 EIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CSPI03G21980 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-27
Identity = 117/412 (28.40%), Postives = 202/412 (49.03%), Query Frame = 0


Query: 158 IALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRK-QKET 217
           +A K     K  ALL    DT  EA+  D +  +L    ++   ++G  V S R+ ++  
Sbjct: 143 LAQKALSASKQAALL--VDDT--EANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRA 202

Query: 218 KNE--------DDE--------IDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFK 277
           KN         DDE          +  +  + + D + L     +   +L + E   L  
Sbjct: 203 KNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELIS 262

Query: 278 LVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRL 337
            +Q +  L +V+ +L+   G EPT GE A A  ++   ++  +  GR++R KLI  NLRL
Sbjct: 263 HIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRL 322

Query: 338 VLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSM 397
           V+ +  +Y      G  FQDL Q G  GL+ ++++F+P+   R +TYA +WIR +I +S+
Sbjct: 323 VVHIAKQYQN---RGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSI 382

Query: 398 TLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKP 457
             +S T R+   +  +  ++  A+   + E +  P++ E+   VG+S E+  +++  T+ 
Sbjct: 383 FQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRT 442

Query: 458 VYSLH----SRHSTTSEELI--NGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLV 517
             S+     S   TT +E+   +GI     + G       L+R  + ++L+ L PKE  +
Sbjct: 443 PLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQ-----LMRNHVRNLLNVLSPKERRI 502

Query: 518 IRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY 546
           I+ R+G+DG   R+L EI     +S+E VR+ E +AL +LK       L  Y
Sbjct: 503 IKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of CSPI03G21980 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-21
Identity = 93/299 (31.10%), Postives = 147/299 (49.16%), Query Frame = 0


Query: 249 VLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRA 308
           VL   E  RL K ++    L + +  L+  LG EP++ +LA +  ++  +++  L     
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258

Query: 309 ARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYA 368
           AR KL   N+RLV+ +  +Y      G +  DL Q G+ GL+  I++F+  + FR+STY 
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDN---LGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 318

Query: 369 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQ 428
            +WIR  + R++  +S T R+   L      I+ AKL L  E    P+   I   + +SQ
Sbjct: 319 YWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQ 378

Query: 429 ERYLEVMRATKPVYSLHSRHSTTSEELINGITD---VEGTGGDNRRQPALLRLALDD--- 488
           ++      A   V+SL  R +  S   + G T    +  T  +N        LAL +   
Sbjct: 379 KKVRNATEAVSKVFSL-DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVS 438

Query: 489 --VLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 539
             +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH AR
Sbjct: 439 KLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491

[Close]

BLAST of CSPI03G21980 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 90.5 bits (223), Expect = 4.5e-18
Identity = 86/302 (28.48%), Postives = 139/302 (46.03%), Query Frame = 0


Query: 252 SSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARN 311
           S   T +   V+ +  +  ++ +L++  G+  +    A A  MN   + R L  G   R+
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334

Query: 312 KLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFW 371
           +L+K    LVLF+   Y      G   +DL QAG  G++   +RF+  R ++ STY  +W
Sbjct: 335 ELVKSTRSLVLFLARNY---RGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYW 394

Query: 372 IRHAIIRSMTLSSFTR-VSFGLDSVRV--EIQRAKLELLCELH-RLPTEGEITAKVGISQ 431
           IR ++  S  +S   R V      +R    IQ+A+  L      +   + EI    G S 
Sbjct: 395 IRKSM--STMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSV 454

Query: 432 ERYLEVMRATKPVYSLHSRHS---TTSEELINGITDVEGTGGDNRRQPALLRLALDDVLD 491
           ++     +  K V S+  +     TT        T +E       RQ A  R  + D+L+
Sbjct: 455 KKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSA--RRDIHDLLE 514

Query: 492 SLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 547
            L+P+E  V+  RYGL     ++L EI   L +S+E +RK E +A+ KL+     + LR 
Sbjct: 515 GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 569

The following BLAST results are available for this feature:

BLAST of CSPI03G21980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNX9	1.9e-170	60.29	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]
P26683	1.7e-38	32.37	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	1.5e-37	33.78	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P74565	5.2e-35	35.36	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
P52322	1.3e-33	35.89	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]

BLAST of CSPI03G21980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCQ9	2.2e-299	99.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354500 PE=3 SV=1	[more]
A0A5A7U8E5	3.1e-285	95.43	RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3BY73	7.0e-285	95.25	RNA polymerase sigma factor sigE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CQ87	2.3e-256	87.57	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Cucumis melo OX...	[more]
A0A6J1E518	4.4e-247	84.10	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS...	[more]

BLAST of CSPI03G21980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739380.1	4.6e-299	99.63	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1 [Cucumi...	[more]
XP_011651413.1	4.6e-299	99.63	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X2 [Cucumi...	[more]
KAA0050456.1	6.5e-285	95.43	RNA polymerase sigma factor sigE [Cucumis melo var. makuwa]	[more]
TYK03136.1	1.4e-284	95.25	RNA polymerase sigma factor sigE [Cucumis melo var. makuwa]	[more]
XP_008465379.1	4.8e-256	87.57	PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Cucumi...	[more]

BLAST of CSPI03G21980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24120.1	1.3e-171	60.29	sigma factor E	[more]
AT1G08540.1	2.1e-31	27.73	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.1e-27	28.40	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	3.3e-21	31.10	sigma factor A	[more]
AT3G53920.1	4.5e-18	28.48	RNApolymerase sigma-subunit C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 364..372 score: 63.94 coord: 507..522 score: 38.47 coord: 522..533 score: 49.09 coord: 340..353 score: 50.0 coord: 486..498 score: 38.21
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 470..547 e-value: 1.1E-20 score: 75.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 386..438 e-value: 5.8E-6 score: 28.3 coord: 260..303 e-value: 1.9E-5 score: 26.6
None	No IPR available	GENE3D	1.10.1740.10		coord: 304..381 e-value: 1.2E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..145
None	No IPR available	PANTHER	PTHR30603:SF4	RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 2..188
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..188
None	No IPR available	PANTHER	PTHR30603:SF4	RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 190..547
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 190..547
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 482..535 e-value: 1.9E-13 score: 49.7
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 397..461 e-value: 4.9E-10 score: 39.4 coord: 268..308 e-value: 2.9E-6 score: 27.3
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 313..379 e-value: 1.5E-11 score: 43.9
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 309..535 e-value: 3.3E-23 score: 80.1
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 394..450
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 473..546
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 231..380

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21980.1	CSPI03G21980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity