CSPI03G21960 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G21960
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 18417526 .. 18420083 (+)
RNA-Seq ExpressionCSPI03G21960
SyntenyCSPI03G21960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATTTCAAAATGGGCTGTTTTTCAATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTAGTCTTCAATTTTATAAGAGAACGAAAGATTTTGTCTCTGATACAATCAATCCATTTGTATGGATCTAAAGGTCGATAAGTATTCGGAATTTGAATTTCGGGAATAAAGTGGAGAAGAAAATGGTCCTGGAGTATATAAAGAAGGGGTGGGGTTTTAGCGGCTGCCTTTCTATATATTTACATATTTTCTTCTGAATGAATAGTTGGAGTACTCGATTTCTTTTTATGAACTGAATATTCCAATTCTCGAATGATTTGCCCTACTCTTTGATTAGGATGTGAGCCTCCAAAGTAAAGATGAAAATCAAAGAGAAAAAGGACAAAAACCAAAAGGAAGAAAAGAACAATACCCTTTAAGTCCCCCTTTATGCTATTGATTGGGTATCTATCACTTTTTTAATCCAAAGGATAAACCTTTTTTTTTTTCTTAAGTTTTTTTTTTATGAGGAGATGCTTTATGTGGGAAAATACAGATTAATTGTTCTGTTCTTTGCCATAGAAAGTGATTGTTTTATTACTTTTGCTTGATTATCTATCCAATAGGGTGATATTTTTGCTGGTTGAAAAGAAAGTTTAAACAATGATGGATATTGGTGGAATCCCTGGTTCTGCATAAAGGTTAATTGAAGGTTTTTGATTCTTTCTGTGGGCTTTTCTTTACATATTAAACGTTATTCCTTTTATCCATAAAAGCTCTCGTAGATAACTCAGAGTAGTCAGTAAGTGTCTTCTTCTCAGAGGAGAACCTTTTGTGTTTTATCTAATTATTTGACATTTGGCAAAAAAAAAAAGTGAGATTTAAGATTTTTTTTCTTAAACTCCTAGCATTGAGTCTCTCCTGTGAAAAGACTTGTCCAACAAATTGACAAACGCCAGTTTCTTTCATGGTATTTAAGTTTATTGGATGCTGTATTTTAGGAACTCCTTGGTTGTTCGATTCTGTCTCAGCAAATAGAAATGGGTGTCTTTTGACTTGAAACTTTAAGATTGGATGATTCATATCACTAATTAAACTACTCTGCTTCTACTCAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGATTCTGGTAGTTTTCTTTATATTATATAAATATAGAAATACCTTACCAATGATATCATATTTTAAAGTAAAGTACTGATATGGTATTCTTTTTGTTCACGGATTACCTTGAGCCACCTTTGCACTAAAATCAATGAAAGAAAGAAAAGAGAATAAGACTTCTTTGGGAGATATTCAAAATAGTTTTATATACTTGCTTTTGAAATTGTTATAAAATTTATACTAGAGTGGTTGGTAAAAGAAACCATGTTCTGATTTTATGGAAAATAAATGTTTCTAAATAATGAAAAGCAACTATGGAAAATGAGGGAAAACATAAATTTAAAGACTAGTTAGTCAAAACATGTTTTCACTAAACTTTTGTTCAGCAGTCCTTTGATCATTAATTAAGTGATGCAAGAGAAACCCACGTGAAATGAACCATTTGGAGTTTGAAGTTTATTACACTCCACTAGTACGTTAGCTTGTGATTTAACTCTTGTTTGCCTGAACACGTTTTGAAATGAGGCAAATGTTCGTGGAATATGTGATTGCATTCTACAATAACATTAAGGTACCTACTTGTTAATGAATTGTGATCTTTTCAATTTTAGTGGACAAGGCAGCGGCAATAATAGTTTGGAAAATATGATATTCTACACTAAGAGACAAATTGCACTGGGTTTAAAGATGCATCCAATAGCTTTGGAAGCACCTTTCTGTTATATATTAAAATTAATGAGCATTCCTTATGTAGAAGATTCTCATCAGCTGATATTTGAAGCAATTGTGAATTTTTGGAGAAACTTAACATATTGGTAGCTTTTATATTAAAAAACCATGGGCCAAGTAAAAGGAATGGATGCTTTTTTGAAGAATCTAATTTGGGACTCAGACCAGAACATATTGGCCAGATTTTATTATTATTATTATTATTTTGGCAAAATAGGAACAAACATTCTGAATTGACTTGTTTTCTAGCTTGTAGGAAGGTACTCTTGTTTGAAATCATTGCTGTAAATTGAGCTAAATTATACACTTGTCATACATAGGGAGGTAGGTTCTTCACTCCACCCACATGGGTACTCTGTAACTCTATGAAACTTGGGAATCTCATAAGGTAATTTCTGAACAGAAGAACATGGGTTTACCTTTTTAGATTAATGGCTTTTAGTTGCTTAATTTGG

mRNA sequence

TGAATTTCAAAATGGGCTGTTTTTCAATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGATTCTGGTAGTTTTCTTTATATTATATAAATATAGAAATACCTTACCAATGATATCATATTTTAAAGTAAAGTACTGATATGGTATTCTTTTTGTTCACGGATTACCTTGAGCCACCTTTGCACTAAAATCAATGAAAGAAAGAAAAGAGAATAAGACTTCTTTGGGAGATATTCAAAATAGTTTTATATACTTGCTTTTGAAATTGTTATAAAATTTATACTAGAGTGGTTGGTAAAAGAAACCATGTTCTGATTTTATGGAAAATAAATGTTTCTAAATAATGAAAAGCAACTATGGAAAATGAGGGAAAACATAAATTTAAAGACTAGTTAGTCAAAACATGTTTTCACTAAACTTTTGTTCAGCAGTCCTTTGATCATTAATTAAGTGATGCAAGAGAAACCCACGTGAAATGAACCATTTGGAGTTTGAAGTTTATTACACTCCACTAGTACGTTAGCTTGTGATTTAACTCTTGTTTGCCTGAACACGTTTTGAAATGAGGCAAATGTTCGTGGAATATGTGATTGCATTCTACAATAACATTAAGGTACCTACTTGTTAATGAATTGTGATCTTTTCAATTTTAGTGGACAAGGCAGCGGCAATAATAGTTTGGAAAATATGATATTCTACACTAAGAGACAAATTGCACTGGGTTTAAAGATGCATCCAATAGCTTTGGAAGCACCTTTCTGTTATATATTAAAATTAATGAGCATTCCTTATGTAGAAGATTCTCATCAGCTGATATTTGAAGCAATTGTGAATTTTTGGAGAAACTTAACATATTGGTAGCTTTTATATTAAAAAACCATGGGCCAAGTAAAAGGAATGGATGCTTTTTTGAAGAATCTAATTTGGGACTCAGACCAGAACATATTGGCCAGATTTTATTATTATTATTATTATTTTGGCAAAATAGGAACAAACATTCTGAATTGACTTGTTTTCTAGCTTGTAGGAAGGTACTCTTGTTTGAAATCATTGCTGTAAATTGAGCTAAATTATACACTTGTCATACATAGGGAGGTAGGTTCTTCACTCCACCCACATGGGTACTCTGTAACTCTATGAAACTTGGGAATCTCATAAGGTAATTTCTGAACAGAAGAACATGGGTTTACCTTTTTAGATTAATGGCTTTTAGTTGCTTAATTTGG

Coding sequence (CDS)

ATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

Protein sequence

MFIRFSTLYSLVRIKRGNPDDSIPPLVIVNHQLLISGQRNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK*
Homology
[Close]
BLAST of CSPI03G21960 vs. ExPASy TrEMBL
Match: A0A0A0LA54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354480 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 39 RNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK 98
          +NLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK
Sbjct: 19 QNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK 77

[Close]
BLAST of CSPI03G21960 vs. NCBI nr
Match: KAE8650644.1 (hypothetical protein Csa_010618 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-24
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 36 SGQRNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDG 95
          S +RNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDG
Sbjct: 3  SVRRNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDG 62

Query: 96 A 97
          A
Sbjct: 63 A 63

[Close]
BLAST of CSPI03G21960 vs. NCBI nr
Match: XP_038878065.1 (uncharacterized protein LOC120070239 isoform X2 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 7.1e-17
Identity = 53/67 (79.10%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 29 VNHQLLISGQRNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDI 88
          VNHQLLI  QRNL  +IF K   R HSDEKRHIAI +VLILKDK L RLLLLGTFIDTDI
Sbjct: 10 VNHQLLIFAQRNL--WIFPKRHSRQHSDEKRHIAIHEVLILKDKDLWRLLLLGTFIDTDI 69

Query: 89 KDLENDG 96
          KDLENDG
Sbjct: 70 KDLENDG 74

[Close]
BLAST of CSPI03G21960 vs. NCBI nr
Match: XP_038878056.1 (uncharacterized protein LOC120070239 isoform X1 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 7.1e-17
Identity = 53/67 (79.10%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 29 VNHQLLISGQRNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDI 88
          VNHQLLI  QRNL  +IF K   R HSDEKRHIAI +VLILKDK L RLLLLGTFIDTDI
Sbjct: 10 VNHQLLIFAQRNL--WIFPKRHSRQHSDEKRHIAIHEVLILKDKDLWRLLLLGTFIDTDI 69

Query: 89 KDLENDG 96
          KDLENDG
Sbjct: 70 KDLENDG 74

The following BLAST results are available for this feature:
BLAST of CSPI03G21960 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G21960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA546.5e-2498.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354480 PE=4 SV=1[more]
BLAST of CSPI03G21960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650644.17.8e-2496.72hypothetical protein Csa_010618 [Cucumis sativus][more]
XP_038878065.17.1e-1779.10uncharacterized protein LOC120070239 isoform X2 [Benincasa hispida][more]
XP_038878056.17.1e-1779.10uncharacterized protein LOC120070239 isoform X1 [Benincasa hispida][more]
BLAST of CSPI03G21960 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21960.1CSPI03G21960.1mRNA