CSPI03G21430 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21430
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Importin N-terminal domain-containing protein
Location	Chr3: 17658644 .. 17659735 (-)
RNA-Seq Expression	CSPI03G21430
Synteny	CSPI03G21430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGCAGAAGACTAACCACTTTCAGCCTCGAGATAAGCGTCAATATCCTAATTGAAGAAGTTCGCCAGTCCGGTAGGGATGGAGGTGTGGTTGGCGGTGGCTGCAGAAAGGGAGGTTGGCAGGACTACTGATGGTGAAAGGCAATCGTGCCCGTGGGTGGCAAAAGACTGATCAGCGGAAAGGGGAAGCTGATCAGTTGCTGTTGGGGTGGTTGTGATTGAATTGACAGTAGTGGTAGGAGATATTTGTCGACAGCAGCGTCTCTAGTGGGAGAAATGGCAGCGGCGGCAACGTCAGTGATGTTGGCGGTAGCGGTGAGGTTATTGCCAATGGTCAAGAGTTTTGTGTTAGGTTTTTCTATTGGTTGCTTTCGTTAATGACAGGTAGGATTTCATTGTTCCTCTGATCTGATATCATATTGAACAAGAGGAATATGAGAAAGTACAAGTTCTACGTGAAAAACCCTCGTACAGGGAGAAAAAACTACGATAGAAGCCTTTCTTATTATTTTTTGATGATCAAAAGAGTACAAGGGGGAAGAATATATATATATGTCATAATAAGCCCCAACAAAAAAGGAAATAAAACTAGTGTACAATCAATCATACAAATATCCTTAGGGCTATAAAGCCTAATTGTTTATACTAGACCCTAATTTCCAACAATATTTTAATTGTTTTTACAGTATTCTTTTGTTTCCTAGTGAAATATGTTATATGATCTTGATGTTTCATGTAGCTGCTTGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCAAGTTTAGTGACTGAAATATCTCCGGGATTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGACCTTCAAAGACTGGTATAAGCTTTTTCTGTTTTGTATAACACTTCTAATTATTTGTCTAACTGTTATATTATCTCCCATTTATTCGTTCCTAGGTTTAATGGTGCTTTATCCCTCGAGATCTCCAATGATCATCCAAACATGCGTATCATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTATTGTCT

mRNA sequence

ATGGCAGGCAGAAGACTAACCACTTTCAGCCTCGAGATAAGCGTCAATATCCTAATTGAAGAAGTTCGCCAGTCCGGTAGGGATGGAGGTGTGGTTGGCGGTGGCTGCAGAAAGGGAGGCAATCGTGCCCGTGGGTGGCAAAAGACTGATCAGCGGAAAGGGGAAGCTGATCAGTTGCTGTTGGGGTGCGTCTCTAGTGGGAGAAATGGCAGCGGCGGCAACGTCAGTGATGTTGGCGGTAGCGGTGAGGTTATTGCCAATGGTCAAGAGTTTTGTCTGCTTGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCAAGTTTAGTGACTGAAATATCTCCGGGATTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGACCTTCAAAGACTGGTTTAATGGTGCTTTATCCCTCGAGATCTCCAATGATCATCCAAACATGCGTATCATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTATTGTCT

Coding sequence (CDS)

ATGGCAGGCAGAAGACTAACCACTTTCAGCCTCGAGATAAGCGTCAATATCCTAATTGAAGAAGTTCGCCAGTCCGGTAGGGATGGAGGTGTGGTTGGCGGTGGCTGCAGAAAGGGAGGCAATCGTGCCCGTGGGTGGCAAAAGACTGATCAGCGGAAAGGGGAAGCTGATCAGTTGCTGTTGGGGTGCGTCTCTAGTGGGAGAAATGGCAGCGGCGGCAACGTCAGTGATGTTGGCGGTAGCGGTGAGGTTATTGCCAATGGTCAAGAGTTTTGTCTGCTTGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCAAGTTTAGTGACTGAAATATCTCCGGGATTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGACCTTCAAAGACTGGTTTAATGGTGCTTTATCCCTCGAGATCTCCAATGATCATCCAAACATGCGTATCATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTATTGTCT

Protein sequence

MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLLLGCVSSGRNGSGGNVSDVGGSGEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEVLS

Homology

[Close]

BLAST of CSPI03G21430 vs. ExPASy Swiss-Prot
Match: Q9UI26 (Importin-11 OS=Homo sapiens OX=9606 GN=IPO11 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 94  LGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALSL 153
           L PV++ ++Q  + G +++  E    LL+KDA Y A     YEL + + F  WF   L  
Sbjct: 424 LTPVLLEMMQ-TLQGPTNV--EDMNALLIKDAVYNAVGLAAYELFDSVDFDQWFKNQLLP 483

Query: 154 EISNDHPNMRIIRRKVALILGQWVS 179
           E+   H   + +RR+V  ++GQW+S
Sbjct: 484 ELQVIHNRYKPLRRRVIWLIGQWIS 505

[Close]

BLAST of CSPI03G21430 vs. ExPASy Swiss-Prot
Match: Q8K2V6 (Importin-11 OS=Mus musculus OX=10090 GN=Ipo11 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 28/85 (32.94%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 94  LGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALSL 153
           L PV++ ++Q  + G +++  E    LL+KDA Y A     +EL + + F  WF   L  
Sbjct: 424 LTPVLLEMMQ-TLEGPTNV--EDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLP 483

Query: 154 EISNDHPNMRIIRRKVALILGQWVS 179
           E+   H   + +RR+V  ++GQW+S
Sbjct: 484 ELQVSHNRYKPLRRRVIWLIGQWIS 505

[Close]

BLAST of CSPI03G21430 vs. ExPASy TrEMBL
Match: A0A0A0L7M2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G313230 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.4e-94
Identity = 180/182 (98.90%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL 60
           MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL
Sbjct: 1   MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL 60

Query: 61  LGCVSSGRNGSGGNVSDVGGSGEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL 120
           LG VSSGRNGSGGNVSDVGGS EVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL
Sbjct: 61  LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL 120

Query: 121 LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV 180
           LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 121 LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV 180

Query: 181 LS 183
           LS
Sbjct: 181 LS 182

[Close]

BLAST of CSPI03G21430 vs. ExPASy TrEMBL
Match: A0A6J1CNW0 (importin-11 OS=Momordica charantia OX=3673 GN=LOC111013193 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEV 545

[Close]

BLAST of CSPI03G21430 vs. ExPASy TrEMBL
Match: A0A5D3BRZ8 (Importin-11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001360 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.1e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAM+GCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMSGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of CSPI03G21430 vs. ExPASy TrEMBL
Match: A0A1S3C5V8 (importin-11 OS=Cucumis melo OX=3656 GN=LOC103496816 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.1e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAM+GCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMSGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of CSPI03G21430 vs. ExPASy TrEMBL
Match: A0A6J1GA09 (importin-11 OS=Cucurbita moschata OX=3662 GN=LOC111452158 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSIL+EAM GCSS VT+ISPGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 458 LLGPVVVSILREAMTGCSSSVTDISPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEV 545

[Close]

BLAST of CSPI03G21430 vs. NCBI nr
Match: XP_011651399.1 (importin-11 [Cucumis sativus] >XP_031738081.1 importin-11 [Cucumis sativus] >KAE8650602.1 hypothetical protein Csa_011532 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of CSPI03G21430 vs. NCBI nr
Match: XP_022143284.1 (importin-11 [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEV 545

[Close]

BLAST of CSPI03G21430 vs. NCBI nr
Match: XP_008457041.1 (PREDICTED: importin-11 [Cucumis melo] >TYK01562.1 importin-11 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAM+GCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMSGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of CSPI03G21430 vs. NCBI nr
Match: XP_023524707.1 (importin-11 [Cucurbita pepo subsp. pepo] >XP_023524709.1 importin-11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-39
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSIL+EAMNGCSSLVT+ISPGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 458 LLGPVVVSILREAMNGCSSLVTDISPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEV 545

[Close]

BLAST of CSPI03G21430 vs. NCBI nr
Match: XP_038883899.1 (importin-11 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-39
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCSSLVTEISP LLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMNGCSSLVTEISPALLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of CSPI03G21430 vs. TAIR 10
Match: AT3G08960.1 (ARM repeat superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-36
Identity = 71/88 (80.68%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGP+VVSILQEAMN C   VTEI+P LLLKDAAY A AYVYYELSNYL F+DWFNGALS
Sbjct: 455 LLGPIVVSILQEAMNNCPPSVTEITPALLLKDAAYAATAYVYYELSNYLNFRDWFNGALS 514

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LE+SNDHPN RII RKVA+ILG WVSE+
Sbjct: 515 LELSNDHPNRRIIHRKVAMILGHWVSEI 542

The following BLAST results are available for this feature:

BLAST of CSPI03G21430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UI26	6.4e-06	34.12	Importin-11 OS=Homo sapiens OX=9606 GN=IPO11 PE=1 SV=1	[more]
Q8K2V6	1.4e-05	32.94	Importin-11 OS=Mus musculus OX=10090 GN=Ipo11 PE=1 SV=1	[more]

BLAST of CSPI03G21430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M2	8.4e-94	98.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G313230 PE=4 SV=1	[more]
A0A6J1CNW0	1.8e-40	98.86	importin-11 OS=Momordica charantia OX=3673 GN=LOC111013193 PE=4 SV=1	[more]
A0A5D3BRZ8	3.1e-40	97.73	Importin-11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001360 P...	[more]
A0A1S3C5V8	3.1e-40	97.73	importin-11 OS=Cucumis melo OX=3656 GN=LOC103496816 PE=4 SV=1	[more]
A0A6J1GA09	2.9e-38	94.32	importin-11 OS=Cucurbita moschata OX=3662 GN=LOC111452158 PE=4 SV=1	[more]

BLAST of CSPI03G21430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651399.1	1.7e-40	98.86	importin-11 [Cucumis sativus] >XP_031738081.1 importin-11 [Cucumis sativus] >KAE...	[more]
XP_022143284.1	3.8e-40	98.86	importin-11 [Momordica charantia]	[more]
XP_008457041.1	6.5e-40	97.73	PREDICTED: importin-11 [Cucumis melo] >TYK01562.1 importin-11 [Cucumis melo var....	[more]
XP_023524707.1	2.5e-39	96.59	importin-11 [Cucurbita pepo subsp. pepo] >XP_023524709.1 importin-11 [Cucurbita ...	[more]
XP_038883899.1	2.5e-39	96.59	importin-11 [Benincasa hispida]	[more]

BLAST of CSPI03G21430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08960.1	2.1e-36	80.68	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10997	IMPORTIN-7, 8, 11	coord: 93..180
None	No IPR available	PANTHER	PTHR10997:SF59	BNAC03G36270D PROTEIN	coord: 93..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21430.1	CSPI03G21430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005635	nuclear envelope
molecular_function	GO:0031267	small GTPase binding