CSPI03G21340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Location	Chr3: 17572464 .. 17573128 (+)
RNA-Seq Expression	CSPI03G21340
Synteny	CSPI03G21340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATCAAAAGCAAAGTTCTACCTGACTTGTCTAAACTGGAGCCACTCGACGGAACAAACTACCGCCGCTGGTCCCAGAAGTTATCGATCTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCAAACCGCCAATCGATCCTCTAGCACCACCAATCAATCTTCCAGCACCTTCTGATCCAAAATCTTCCACGGGATCCATTGTCGTCACTACTGACCAGGTAAAGGAAGCATCTACAATTGATCCCAAGAAGTACAAGAAGGACAACAAGATTGTTCGTGGGCATCTGTTGAACCATATGTTGGATCCCGTGTTTGACTTATTTGTAATCCAAAAATCTGTCAAGACATCTGGTGCATTATGGAGTCTCGCTATGGTGAAGACGACGCAGAGAGAAAGAAGTACGTTGTGGAAAAATGGCTGCAATTTCAAATGATAGATGATAAGCCAATTGTGGAGCAGATACATGAGTATGAAAACCTTGTGGCCAATGTCCTATCTGAAGGTATGAAGATGTGTAAGATACTTCAAGCAAATGTTTTACTGGAAAAATTTTCACCCTCTTGGACCGACTACCAAAATTACTTGAAGCACAAGAAGAAAGATCTGAAACTCCAAGATCTTATAAGCCACATGCGTACAGAAGAGGCCAACTGA

mRNA sequence

ATGTCAATCAAAAGCAAAGTTCTACCTGACTTGTCTAAACTGGAGCCACTCGACGGAACAAACTACCGCCGCTGGTCCCAGAAGTTATCGATCTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCAAACCGCCAATCGATCCTCTAGCACCACCAATCAATCTTCCAGCACCTTCTGATCCAAAATCTTCCACGGGATCCATTGTCGTCACTACTGACCAGGTAAAGGAAGCATCTACAATTGATCCCAAGAAGTACAAGAAGGACAACAAGATTGTTCGTGGGCATCTGTTGAACCATATGTTGGATCCCTCTCGCTATGGTGAAGACGACGCAGAGAGAAAGAAGTACGTTGTGGAAAAATGGCTGCAATTTCAAATGATAGATGATAAGCCAATTGTGGAGCAGATACATGAGTATGAAAACCTTGTGGCCAATGTCCTATCTGAAGGTATGAAGATGTGTAAGATACTTCAAGCAAATGTTTTACTGGAAAAATTTTCACCCTCTTGGACCGACTACCAAAATTACTTGAAGCACAAGAAGAAAGATCTGAAACTCCAAGATCTTATAAGCCACATGCGTACAGAAGAGGCCAACTGA

Coding sequence (CDS)

ATGTCAATCAAAAGCAAAGTTCTACCTGACTTGTCTAAACTGGAGCCACTCGACGGAACAAACTACCGCCGCTGGTCCCAGAAGTTATCGATCTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCAAACCGCCAATCGATCCTCTAGCACCACCAATCAATCTTCCAGCACCTTCTGATCCAAAATCTTCCACGGGATCCATTGTCGTCACTACTGACCAGGTAAAGGAAGCATCTACAATTGATCCCAAGAAGTACAAGAAGGACAACAAGATTGTTCGTGGGCATCTGTTGAACCATATGTTGGATCCCTCTCGCTATGGTGAAGACGACGCAGAGAGAAAGAAGTACGTTGTGGAAAAATGGCTGCAATTTCAAATGATAGATGATAAGCCAATTGTGGAGCAGATACATGAGTATGAAAACCTTGTGGCCAATGTCCTATCTGAAGGTATGAAGATGTGTAAGATACTTCAAGCAAATGTTTTACTGGAAAAATTTTCACCCTCTTGGACCGACTACCAAAATTACTTGAAGCACAAGAAGAAAGATCTGAAACTCCAAGATCTTATAAGCCACATGCGTACAGAAGAGGCCAACTGA

Protein sequence

MSIKSKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSIVVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDPSRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN*

Homology

[Close]

BLAST of CSPI03G21340 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.1e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSYKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP--TFDPPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. ExPASy TrEMBL
Match: A0A5A7TG73 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007360 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.1e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSYKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP--TFDPPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. ExPASy TrEMBL
Match: A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSD--PPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSD--PPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. ExPASy TrEMBL
Match: A0A5A7TMS2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002600 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.1e-77
Identity = 159/225 (70.67%), Postives = 170/225 (75.56%), Query Frame = 0


Query: 1   MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPD--PPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLKSRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF P W DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPCWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. NCBI nr
Match: KAA0042223.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 4.3e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSYKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP--TFDPPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. NCBI nr
Match: TYK26791.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 4.3e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSYKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP--TFDPPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 5.7e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSD--PPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. NCBI nr
Match: KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 5.7e-77
Identity = 159/225 (70.67%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSD--PPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF PSW DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. NCBI nr
Match: KAA0043346.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-76
Identity = 159/225 (70.67%), Postives = 170/225 (75.56%), Query Frame = 0


Query: 1   MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLP 60
           MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP    
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPD--PPTTTS 60

Query: 61  APSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDP---------- 120
             SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VRGHLLNHM DP          
Sbjct: 61  TSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKS 120

Query: 121 ---------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMC 180
                    SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC
Sbjct: 121 AKDIWSTLKSRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMC 180

Query: 181 KILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN 203
           +ILQANVLLEKF P W DY+N+LKHKKKDLKLQ+LISHMRTEEAN
Sbjct: 181 EILQANVLLEKFPPCWNDYRNHLKHKKKDLKLQELISHMRTEEAN 223

[Close]

BLAST of CSPI03G21340 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-14
Identity = 50/210 (23.81%), Postives = 101/210 (48.10%), Query Frame = 0


Query: 13  KLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSIVV 72
           K+   DG +Y  W+ ++ +F +QL++ YVL                  S+P  S GS   
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVL------------------SEPCPSIGSSQG 253

Query: 73  TTDQVKEASTIDP--KKYKKDNKIVRGHLLNHMLDP--SRYGE----------------- 132
                +E +  D   KK+ +D+ +   HL+N + D    RY +                 
Sbjct: 254 PETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQ 313

Query: 133 -DDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFS 192
            D+++ K+  V K+++F+M++++PI+EQ+  +  +  +++S GM + +    + ++ KF 
Sbjct: 314 CDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFP 373

Query: 193 PSWTDYQNYLKHKKKDLKLQDLISHMRTEE 201
           PSW  +   L  +++ L +  L+  ++ EE
Sbjct: 374 PSWRGFCTRLM-EEEYLPVWMLMERVKAEE 384

The following BLAST results are available for this feature:

BLAST of CSPI03G21340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G21340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSQ3	2.1e-77	70.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TG73	2.1e-77	70.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U9X9	2.7e-77	70.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZI1	2.7e-77	70.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TMS2	6.1e-77	70.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI03G21340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042223.1	4.3e-77	70.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26791.1	4.3e-77	70.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	5.7e-77	70.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051006.1	5.7e-77	70.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043346.1	1.3e-76	70.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G21340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	7.3e-14	23.81	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 108..200 e-value: 2.6E-7 score: 30.5
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 57..202
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 57..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21340.1	CSPI03G21340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding